Package evaluation of DelayEmbeddings on Julia 1.13.0-DEV.974 (7bbb213719*) started at 2025-08-12T16:17:32.541 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.31s ################################################################################ # Installation # Installing DelayEmbeddings... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [5732040d] + DelayEmbeddings v2.9.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.0 [5732040d] + DelayEmbeddings v2.9.0 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.13.0 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [b8a86587] + NearestNeighbors v0.4.22 [645ca80c] + Neighborhood v0.2.4 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [40b095a5] + StateSpaceSets v2.4.0 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Installation completed after 4.74s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 259.36s ################################################################################ # Testing # Testing DelayEmbeddings Status `/tmp/jl_rVk70x/Project.toml` [5732040d] DelayEmbeddings v2.9.0 [8bb1440f] DelimitedFiles v1.9.1 ⌃ [6e36e845] DynamicalSystemsBase v2.3.2 [f43a241f] Downloads v1.7.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_rVk70x/Manifest.toml` [47edcb42] ADTypes v1.16.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.19.0 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] CPUSummary v0.2.7 [fb6a15b2] CloseOpenIntervals v0.1.13 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.0 [e2d170a0] DataValueInterfaces v1.0.0 [5732040d] DelayEmbeddings v2.9.0 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.183.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌃ [6e36e845] DynamicalSystemsBase v2.3.2 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.12 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.1.3 [1a297f60] FillArrays v1.13.0 ⌅ [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [ae98c720] Jieko v0.2.1 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 [77ba4419] NaNMath v1.1.3 [b8a86587] NearestNeighbors v0.4.22 [645ca80c] Neighborhood v0.2.4 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.37.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.15 [94e857df] SIMDTypes v0.1.0 [0bca4576] SciMLBase v2.108.0 [c0aeaf25] SciMLOperators v1.5.0 [53ae85a6] SciMLStructures v1.7.0 [efcf1570] Setfield v1.1.2 [05bca326] 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JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+1 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.2+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... running test file embedding_tests.jl running test file separated/delaytime_test.jl Estimate Delay: Error During Test at /home/pkgeval/.julia/packages/DelayEmbeddings/AV1Ee/test/separated/delaytime_test.jl:9 Got exception outside of a @test UndefVarError: `DeterministicIteratedMap` not defined in `Main` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/DelayEmbeddings/AV1Ee/test/separated/delaytime_test.jl:11 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [3] macro expansion @ ~/.julia/packages/DelayEmbeddings/AV1Ee/test/separated/delaytime_test.jl:17 [inlined] [4] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [5] IncludeInto @ ./Base.jl:313 [inlined] [6] macro expansion @ ~/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:6 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [8] testfile(file::String, testname::String) @ Main ~/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:6 [9] testfile(file::String) @ Main ~/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:5 [10] top-level scope @ ~/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:28 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [12] macro expansion @ ~/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:29 [inlined] [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [14] top-level scope @ none:6 [15] eval(m::Module, e::Any) @ Core ./boot.jl:489 [16] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [17] _start() @ Base ./client.jl:553 running test file separated/embedding_dimension_test.jl Embedding dimension estimation: Error During Test at /home/pkgeval/.julia/packages/DelayEmbeddings/AV1Ee/test/separated/embedding_dimension_test.jl:8 Got exception outside of a @test UndefVarError: `CoupledODEs` not defined in `Main` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/DelayEmbeddings/AV1Ee/test/separated/embedding_dimension_test.jl:10 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [3] macro expansion @ ~/.julia/packages/DelayEmbeddings/AV1Ee/test/separated/embedding_dimension_test.jl:24 [inlined] [4] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [5] IncludeInto @ ./Base.jl:313 [inlined] [6] macro expansion @ ~/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:6 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [8] testfile(file::String, testname::String) @ Main ~/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:6 [9] testfile(file::String) @ Main ~/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:5 [10] top-level scope @ ~/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:28 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [12] macro expansion @ ~/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:30 [inlined] [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [14] top-level scope @ none:6 [15] eval(m::Module, e::Any) @ Core ./boot.jl:489 [16] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [17] _start() @ Base ./client.jl:553 running test file unified/test_pecora.jl Pecora: Error During Test at /home/pkgeval/.julia/packages/DelayEmbeddings/AV1Ee/test/unified/test_pecora.jl:6 Got exception outside of a @test UndefVarError: `CoupledODEs` not defined in `Main` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] (::var"#lorenz#lorenz##0"{var"#lorenz#10#11"})(u0::Vector{Float64}; σ::Float64, ρ::Int64, β::Float64) @ Main ~/.julia/packages/DelayEmbeddings/AV1Ee/test/unified/test_pecora.jl:9 [2] kwcall(::@NamedTuple{ρ::Int64}, ::var"#lorenz#lorenz##0"{var"#lorenz#10#11"}, u0::Vector{Float64}) @ Main ~/.julia/packages/DelayEmbeddings/AV1Ee/test/unified/test_pecora.jl:8 [3] top-level scope @ ~/.julia/packages/DelayEmbeddings/AV1Ee/test/unified/test_pecora.jl:8 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [5] macro expansion @ ~/.julia/packages/DelayEmbeddings/AV1Ee/test/unified/test_pecora.jl:17 [inlined] [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [7] IncludeInto @ ./Base.jl:313 [inlined] [8] macro expansion @ ~/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:6 [inlined] [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [10] testfile(file::String, testname::String) @ Main ~/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:6 [11] testfile(file::String) @ Main ~/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:5 [12] top-level scope @ ~/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:28 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [14] macro expansion @ ~/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:34 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [16] top-level scope @ none:6 [17] eval(m::Module, e::Any) @ Core ./boot.jl:489 [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [19] _start() @ Base ./client.jl:553 running test file unified/uzal_cost_test.jl Testing uzal_cost.jl... running test file unified/test_pecuzal_embedding.jl Testing pecuzal_method.jl... Initializing PECUZAL algorithm for univariate input... Starting 1-th embedding cycle... Starting 2-th embedding cycle... Starting 3-th embedding cycle... Starting 4-th embedding cycle... Algorithm stopped due to increasing L-values. VALID embedding achieved ✓. 41.840388 seconds (49.87 M allocations: 3.891 GiB, 4.45% gc time, 79.80% compilation time) Initializing PECUZAL algorithm for univariate input... Starting 1-th embedding cycle... Starting 2-th embedding cycle... Starting 3-th embedding cycle... Starting 4-th embedding cycle... Algorithm stopped due to increasing L-values. VALID embedding achieved ✓. 13.199398 seconds (19.74 M allocations: 1.654 GiB, 2.29% gc time, 69.15% compilation time) Initializing PECUZAL algorithm for univariate input... Starting 1-th embedding cycle... Starting 2-th embedding cycle... Starting 3-th embedding cycle... Algorithm stopped due to increasing L-values. VALID embedding achieved ✓. 12.170794 seconds (48.98 M allocations: 4.339 GiB, 13.57% gc time, 0.40% compilation time) Initializing PECUZAL algorithm for multivariate input... Starting 1-th embedding cycle... Starting 2-th embedding cycle... Starting 3-th embedding cycle... Starting 4-th embedding cycle... Algorithm stopped due to increasing L-values. VALID embedding achieved ✓. 37.701200 seconds (148.80 M allocations: 11.467 GiB, 7.87% gc time, 18.18% compilation time) Initializing PECUZAL algorithm for multivariate input... Starting 1-th embedding cycle... Starting 2-th embedding cycle... Starting 3-th embedding cycle... Starting 4-th embedding cycle... Algorithm stopped due to increasing L-values. VALID embedding achieved ✓. 22.477611 seconds (74.85 M allocations: 5.799 GiB, 6.62% gc time, 27.16% compilation time) Initializing PECUZAL algorithm for multivariate input... Starting 1-th embedding cycle... Starting 2-th embedding cycle... Starting 3-th embedding cycle... Algorithm stopped due to increasing L-values. VALID embedding achieved ✓. 25.851585 seconds (122.33 M allocations: 9.069 GiB, 8.28% gc time, 2.35% compilation time) Initializing PECUZAL algorithm for multivariate input... Starting 1-th embedding cycle... Algorithm stopped due to increasing L-values in the first embedding cycle. Valid embedding NOT achieved ⨉. 4.504158 seconds (5.21 M allocations: 799.856 MiB, 2.68% gc time, 56.67% compilation time) running test file unified/test_garcia.jl Testing garcia_almeida.jl... Algorithm stopped due to rising FNNs. Valid embedding achieved ✓. Algorithm stopped due to rising FNNs. Valid embedding achieved ✓. Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Algorithm stopped due to rising FNNs. Valid embedding achieved ✓. Algorithm stopped due to rising FNNs. Valid embedding achieved ✓. running test file unified/mdop_tests.jl Testing mdop_embedding.jl... Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Algorithm stopped due to rising FNNs. Valid embedding achieved ✓. Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Test Summary: | Pass Error Total Time DelayEmbeddings tests | 165 3 168 7m04.3s Embedding tests | 51 51 9.8s Delaytime test | 2 1 3 16.7s Estimate Delay | 2 1 3 7.0s Embedding dimension test | 1 1 0.2s Embedding dimension estimation | 1 1 0.2s Test pecora | 1 1 0.2s Pecora | 1 1 0.1s Uzal cost test | 21 21 23.3s Test pecuzal embedding | 45 45 2m49.1s Test garcia | 25 25 2m13.6s Mdop tests | 21 21 1m09.5s RNG of the outermost testset: Xoshiro(0x298ae9abc08d0c10, 0x6018442b951a0d08, 0x3d7dc2caf6dc7fe0, 0xca1a413d47f4ff72, 0x04004cd249dcaea6) ERROR: LoadError: Some tests did not pass: 165 passed, 0 failed, 3 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:27 Testing failed after 442.42s ERROR: LoadError: Package DelayEmbeddings errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2672 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2521 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:311 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [14] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 738.77s: package tests unexpectedly errored