Package evaluation of Stheno on Julia 1.13.0-DEV.971 (04e26c5eae*) started at 2025-08-10T17:31:10.766 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.2s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.2 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.0 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.24s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 35.07s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_dkn0hI/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.32 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_dkn0hI/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.2 [a9b6321e] Atomix v1.1.1 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.0 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.3 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.38 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.2 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.4.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.14 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.37+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 14334.8 ms ✓ Stheno 1 dependency successfully precompiled in 16 seconds. 79 already precompiled. Precompiling packages... 3001.3 ms ✓ FiniteDifferences 1 dependency successfully precompiled in 3 seconds. 18 already precompiled. Precompiling packages... 9087.3 ms ✓ ForwardDiff 4082.9 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 65741.8 ms ✓ Zygote 3 dependencies successfully precompiled in 80 seconds. 103 already precompiled. Precompiling packages... 9640.3 ms ✓ Zygote → ZygoteDistancesExt 1 dependency successfully precompiled in 11 seconds. 110 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#284` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 19m18.5s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1178s / 98.3% 28.7GiB / 99.3% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 738s 63.8% 738s 20.0GiB 70.0% 20.0GiB addition 1 403s 34.8% 403s 11.5GiB 40.5% 11.5GiB Standardised Tests (correlated sum) 1 225s 19.4% 225s 6.29GiB 22.1% 6.29GiB adj_ad 9 24.9s 2.1% 2.76s 1.00GiB 3.5% 114MiB adj_fd 9 9.10s 0.8% 1.01s 311MiB 1.1% 34.6MiB Standardised Tests (independent sum) 1 132s 11.4% 132s 4.95GiB 17.3% 4.95GiB adj_ad 9 24.0s 2.1% 2.67s 1.22GiB 4.3% 138MiB adj_fd 9 10.4s 0.9% 1.16s 295MiB 1.0% 32.8MiB Correlated GPs 1 42.3s 3.7% 42.3s 274MiB 0.9% 274MiB Consistency Tests 1 18.6s 1.6% 18.6s 118MiB 0.4% 118MiB Verify mean / kernel numerically 1 2.65s 0.2% 2.65s 39.4MiB 0.1% 39.4MiB Consistency Tests 1 1.47s 0.1% 1.47s 12.3MiB 0.0% 12.3MiB product 1 158s 13.7% 158s 3.89GiB 13.6% 3.89GiB multiply by function 1 93.9s 8.1% 93.9s 2.07GiB 7.3% 2.07GiB Diff Tests 1 52.9s 4.6% 52.9s 1.56GiB 5.5% 1.56GiB adj_ad 9 20.7s 1.8% 2.30s 863MiB 3.0% 95.8MiB adj_fd 9 5.94s 0.5% 660ms 110MiB 0.4% 12.2MiB Consistency Tests 1 6.37s 0.5% 6.37s 101MiB 0.3% 101MiB multiply by constant 1 64.5s 5.6% 64.5s 1.81GiB 6.4% 1.81GiB Diff Tests 1 48.1s 4.2% 48.1s 1.77GiB 6.2% 1.77GiB adj_ad 9 15.3s 1.3% 1.70s 788MiB 2.7% 87.6MiB adj_fd 9 10.4s 0.9% 1.15s 289MiB 1.0% 32.1MiB Consistency Tests 1 3.81s 0.3% 3.81s 17.4MiB 0.1% 17.4MiB GP mul errors 1 13.1ms 0.0% 13.1ms 40.0KiB 0.0% 40.0KiB compose 1 83.1s 7.2% 83.1s 2.34GiB 8.2% 2.34GiB general 1 50.5s 4.4% 50.5s 1.51GiB 5.3% 1.51GiB Diff Tests 1 44.3s 3.8% 44.3s 1.46GiB 5.1% 1.46GiB adj_ad 9 13.8s 1.2% 1.54s 728MiB 2.5% 80.9MiB adj_fd 9 5.59s 0.5% 621ms 109MiB 0.4% 12.1MiB Consistency Tests 1 4.64s 0.4% 4.64s 34.1MiB 0.1% 34.1MiB Stretch 1 26.5s 2.3% 26.5s 743MiB 2.5% 743MiB scalar stretch 1 25.7s 2.2% 25.7s 731MiB 2.5% 731MiB scalar input 1 24.8s 2.1% 24.8s 727MiB 2.5% 727MiB adj_fd 9 9.11s 0.8% 1.01s 277MiB 0.9% 30.8MiB adj_ad 9 3.18s 0.3% 353ms 139MiB 0.5% 15.5MiB vector input 1 868ms 0.1% 868ms 3.20MiB 0.0% 3.20MiB Vector stretch 1 669ms 0.1% 669ms 9.78MiB 0.0% 9.78MiB Matrix stretch 1 140ms 0.0% 140ms 2.96MiB 0.0% 2.96MiB Shift 1 3.28s 0.3% 3.28s 39.4MiB 0.1% 39.4MiB Shift{Vector{Float64}} 1 1.79s 0.2% 1.79s 14.1MiB 0.0% 14.1MiB Shift{Float64} 1 1.49s 0.1% 1.49s 25.2MiB 0.1% 25.2MiB Select 1 1.69s 0.1% 1.69s 31.8MiB 0.1% 31.8MiB evaluation 1 773ms 0.1% 773ms 20.2MiB 0.1% 20.2MiB idx isa Vector 1 532ms 0.0% 532ms 7.68MiB 0.0% 7.68MiB idx isa Integer 1 382ms 0.0% 382ms 3.88MiB 0.0% 3.88MiB Periodic 1 1.20s 0.1% 1.20s 33.1MiB 0.1% 33.1MiB cross 1 30.8s 2.7% 30.8s 1.37GiB 4.8% 1.37GiB block arrays 1 16.8s 1.4% 16.8s 783MiB 2.7% 783MiB Stheno._collect ∘ _mortar 1 13.9s 1.2% 13.9s 659MiB 2.3% 659MiB BlockMatrix 1 7.39s 0.6% 7.39s 365MiB 1.2% 365MiB adj_fd 1 943ms 0.1% 943ms 111MiB 0.4% 111MiB adj_ad 1 57.1ms 0.0% 57.1ms 2.36MiB 0.0% 2.36MiB BlockVector 1 6.55s 0.6% 6.55s 294MiB 1.0% 294MiB adj_fd 1 832ms 0.1% 832ms 12.3MiB 0.0% 12.3MiB adj_ad 1 210ms 0.0% 210ms 15.5MiB 0.1% 15.5MiB fdm stuff 1 2.82s 0.2% 2.82s 125MiB 0.4% 125MiB Correctness tests 1 8.01s 0.7% 8.01s 387MiB 1.3% 387MiB Standardised Tests 1 6.01s 0.5% 6.01s 231MiB 0.8% 231MiB gp 1 197s 17.1% 197s 4.37GiB 15.3% 4.37GiB sparse gp 1 20.9s 1.8% 20.9s 401MiB 1.4% 401MiB SparseFiniteGP inference 1 15.3s 1.3% 15.3s 267MiB 0.9% 267MiB SparseFiniteGP methods 1 5.22s 0.5% 5.22s 129MiB 0.4% 129MiB SparseFiniteGP Constructors 1 392ms 0.0% 392ms 4.08MiB 0.0% 4.08MiB adj_ad 2 20.1s 1.7% 10.1s 817MiB 2.8% 408MiB gp 1 15.4s 1.3% 15.4s 250MiB 0.9% 250MiB GP 1 15.0s 1.3% 15.0s 247MiB 0.8% 247MiB independent GPs 1 308ms 0.0% 308ms 2.60MiB 0.0% 2.60MiB wrapped AbstractGP 1 12.2ms 0.0% 12.2ms 286KiB 0.0% 286KiB adj_fd 2 2.53s 0.2% 1.27s 41.0MiB 0.1% 20.5MiB derived_gp 1 152μs 0.0% 152μs 1.59KiB 0.0% 1.59KiB gaussian_process_probabilistic_programme 1 143s 12.3% 143s 2.22GiB 7.8% 2.22GiB Zygote 1 27.6s 2.4% 27.6s 0.96GiB 3.4% 0.96GiB nested gppp 1 15.6s 1.3% 15.6s 84.6MiB 0.3% 84.6MiB External Consistency 1 15.1s 1.3% 15.1s 93.1MiB 0.3% 93.1MiB split 1 689ms 0.1% 689ms 11.6MiB 0.0% 11.6MiB gppp macro 1 55.4ms 0.0% 55.4ms 567KiB 0.0% 567KiB doctests 1 72.1s 6.2% 72.1s 1.70GiB 5.9% 1.70GiB BlockData 1 7.42s 0.6% 7.42s 256MiB 0.9% 256MiB vcat(::GPPPInput...) 1 2.29s 0.2% 2.29s 98.2MiB 0.3% 98.2MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1306.09s PkgEval succeeded after 1369.58s