Package evaluation of SBMLImporter on Julia 1.13.0-DEV.971 (04e26c5eae*) started at 2025-08-11T03:11:44.476 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.88s ################################################################################ # Installation # Installing SBMLImporter... Resolving package versions... Installed MKL_jll ────────────────────────── v2025.2.0+0 Installed CommonWorldInvalidations ───────── v1.0.0 Installed FastPower ──────────────────────── v1.1.3 Installed SIMDTypes ──────────────────────── v0.1.0 Installed Glob ───────────────────────────── v1.3.1 Installed EnzymeCore ─────────────────────── v0.8.12 Installed OrderedCollections ─────────────── v1.8.1 Installed CpuId ──────────────────────────── v0.3.1 Installed SymbolicUtils ──────────────────── v3.30.0 Installed Functors ───────────────────────── v0.5.2 Installed NonlinearSolveSpectralMethods ──── v1.3.0 Installed Optim ──────────────────────────── v1.13.2 Installed StaticArrayInterface ───────────── v1.8.0 Installed NaNMath ────────────────────────── v1.1.3 Installed DiffEqCallbacks ────────────────── v4.9.0 Installed QuadGK ─────────────────────────── v2.11.2 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed FastBroadcast ──────────────────── v0.3.5 Installed DispatchDoctor ─────────────────── v0.4.26 Installed DynamicQuantities ──────────────── v1.8.0 Installed NonlinearSolveBase ─────────────── v1.14.0 Installed LinearSolve ────────────────────── v3.27.1 Installed SBML_jll ───────────────────────── v5.20.1+0 Installed EnumX ──────────────────────────── v1.0.5 Installed Tables ─────────────────────────── v1.12.1 Installed NLSolversBase ──────────────────── v7.10.0 Installed JumpProcesses ──────────────────── v9.16.1 Installed SCCNonlinearSolve ──────────────── v1.4.0 Installed DiffEqBase ─────────────────────── v6.183.0 Installed BracketingNonlinearSolve ───────── v1.3.0 Installed Jieko ──────────────────────────── v0.2.1 Installed InverseFunctions ───────────────── v0.1.17 Installed Reexport ───────────────────────── v1.2.2 Installed JuliaFormatter ─────────────────── v2.1.6 Installed Missings ───────────────────────── v1.2.0 Installed Preferences ────────────────────── v1.4.3 Installed TableTraits ────────────────────── v1.0.1 Installed Static ─────────────────────────── v1.2.0 Installed NonlinearSolve ─────────────────── v4.10.0 Installed LaTeXStrings ───────────────────── v1.4.0 Installed Crayons ────────────────────────── v4.1.1 Installed SortingAlgorithms ──────────────── v1.2.2 Installed RecursiveArrayTools ────────────── v3.36.0 Installed MaybeInplace ───────────────────── v0.1.4 Installed MLStyle ────────────────────────── v0.4.17 Installed UnPack ─────────────────────────── v1.0.2 Installed ADTypes ────────────────────────── v1.16.0 Installed Inflate ────────────────────────── v0.1.5 Installed MacroTools ─────────────────────── v0.5.16 Installed Format ─────────────────────────── v1.3.7 Installed DataStructures ─────────────────── v0.18.22 Installed URIs ───────────────────────────── v1.6.1 Installed DiffResults ────────────────────── v1.1.0 Installed Catalyst ───────────────────────── v15.0.8 Installed ManualMemory ───────────────────── v0.1.8 Installed Tricks ─────────────────────────── v0.1.12 Installed AbstractTrees ──────────────────── v0.4.5 Installed FillArrays ─────────────────────── v1.13.0 Installed ArnoldiMethod ──────────────────── v0.4.0 Installed SparseMatrixColorings ──────────── v0.4.21 Installed TermInterface ──────────────────── v2.0.0 Installed oneTBB_jll ─────────────────────── v2022.0.0+0 Installed ExprTools ──────────────────────── v0.1.10 Installed IntelOpenMP_jll ────────────────── v2025.2.0+0 Installed DataValueInterfaces ────────────── v1.0.0 Installed ArrayInterface ─────────────────── v7.19.0 Installed SciMLJacobianOperators ─────────── v0.1.8 Installed StatsBase ──────────────────────── v0.34.6 Installed RandomNumbers ──────────────────── v1.6.0 Installed TruncatedStacktraces ───────────── v1.4.0 Installed GPUArraysCore ──────────────────── v0.2.0 Installed CommonSubexpressions ───────────── v0.3.1 Installed LayoutPointers ─────────────────── v0.1.17 Installed IrrationalConstants ────────────── v0.2.4 Installed ConcreteStructs ────────────────── v0.2.3 Installed IntegerMathUtils ───────────────── v0.1.3 Installed SimpleTraits ───────────────────── v0.9.5 Installed PDMats ─────────────────────────── v0.11.35 Installed Setfield ───────────────────────── v1.1.2 Installed CompositeTypes ─────────────────── v0.1.4 Installed SBMLImporter ───────────────────── v3.0.3 Installed ArrayLayouts ───────────────────── v1.11.2 Installed DocStringExtensions ────────────── v0.9.5 Installed BlockArrays ────────────────────── v1.7.0 Installed NonlinearSolveQuasiNewton ──────── v1.8.0 Installed Moshi ──────────────────────────── v0.3.7 Installed DifferentiationInterface ───────── v0.6.54 Installed CompositionsBase ───────────────── v0.1.2 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed CommonSolve ────────────────────── v0.2.4 Installed ForwardDiff ────────────────────── v0.10.38 Installed FindFirstFunctions ─────────────── v1.4.1 Installed ResettableStacks ───────────────── v1.1.1 Installed Bijections ─────────────────────── v0.2.2 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed Unityper ───────────────────────── v0.1.6 Installed AliasTables ────────────────────── v1.1.3 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed Combinatorics ──────────────────── v1.0.3 Installed FunctionWrappersWrappers ───────── v0.1.3 Installed LineSearch ─────────────────────── v0.1.4 Installed DynamicPolynomials ─────────────── v0.6.2 Installed RecipesBase ────────────────────── v1.3.4 Installed DataAPI ────────────────────────── v1.16.0 Installed SciMLStructures ────────────────── v1.7.0 Installed Krylov ─────────────────────────── v0.10.1 Installed SciMLOperators ─────────────────── v1.4.0 Installed ComponentArrays ────────────────── v0.15.29 Installed DomainSets ─────────────────────── v0.7.16 Installed StaticArrays ───────────────────── v1.9.14 Installed StaticArraysCore ───────────────── v1.4.3 Installed Requires ───────────────────────── v1.3.1 Installed FunctionWrappers ───────────────── v1.1.3 Installed StringManipulation ─────────────── v0.4.1 Installed TaskLocalValues ────────────────── v0.1.3 Installed Latexify ───────────────────────── v0.16.8 Installed MultivariatePolynomials ────────── v0.5.9 Installed PrettyTables ───────────────────── v2.4.0 Installed LogExpFunctions ────────────────── v0.3.29 Installed Symbolics ──────────────────────── v6.49.0 Installed DiffRules ──────────────────────── v1.15.1 Installed Distributions ──────────────────── v0.25.120 Installed JuliaSyntax ────────────────────── v0.4.10 Installed FiniteDiff ─────────────────────── v2.27.0 Installed Rmath ──────────────────────────── v0.8.0 Installed FastClosures ───────────────────── v0.3.2 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed NonlinearSolveFirstOrder ───────── v1.7.0 Installed StatsFuns ──────────────────────── v1.5.0 Installed Polyester ──────────────────────── v0.7.18 Installed JLLWrappers ────────────────────── v1.7.1 Installed Unitful ────────────────────────── v1.24.0 Installed SciMLBase ──────────────────────── v2.108.0 Installed TestItems ──────────────────────── v1.0.0 Installed Primes ─────────────────────────── v0.5.7 Installed SymbolicLimits ─────────────────── v0.2.2 Installed MutableArithmetics ─────────────── v1.6.4 Installed ThreadingUtilities ─────────────── v0.5.5 Installed Accessors ──────────────────────── v0.1.42 Installed Adapt ──────────────────────────── v4.3.0 Installed ConstructionBase ───────────────── v1.6.0 Installed RuntimeGeneratedFunctions ──────── v0.5.15 Installed HypergeometricFunctions ────────── v0.3.28 Installed SBML ───────────────────────────── v1.6.0 Installed Compat ─────────────────────────── v4.18.0 Installed Random123 ──────────────────────── v1.7.1 Installed StrideArraysCore ───────────────── v0.5.7 Installed Graphs ─────────────────────────── v1.13.0 Installed SymbolicIndexingInterface ──────── v0.3.42 Installed PoissonRandom ──────────────────── v0.4.6 Installed ModelingToolkit ────────────────── v9.82.0 Installed PositiveFactorizations ─────────── v0.2.4 Installed Statistics ─────────────────────── v1.11.1 Installed StatsAPI ───────────────────────── v1.7.1 Installed TimerOutputs ───────────────────── v0.5.29 Installed ExproniconLite ─────────────────── v0.10.14 Installed LazyArrays ─────────────────────── v2.6.2 Installed PrecompileTools ────────────────── v1.3.2 Installed ReactionNetworkImporters ───────── v0.16.1 Installed CPUSummary ─────────────────────── v0.2.7 Installed IfElse ─────────────────────────── v0.1.1 Installed Parameters ─────────────────────── v0.12.3 Installed OffsetArrays ───────────────────── v1.17.0 Installed MuladdMacro ────────────────────── v0.2.4 Installed DiffEqNoiseProcess ─────────────── v5.24.1 Installed ChainRulesCore ─────────────────── v1.26.0 Installed XML2_jll ───────────────────────── v2.13.6+1 Installed PtrArrays ──────────────────────── v1.3.0 Installed Libiconv_jll ───────────────────── v1.18.0+0 Installed SimpleNonlinearSolve ───────────── v2.7.0 Installed SpecialFunctions ───────────────── v2.5.1 Installed IntervalSets ───────────────────── v0.7.11 Installed LineSearches ───────────────────── v7.4.0 Installed PolyesterWeave ─────────────────── v0.2.2 Installed CommonMark ─────────────────────── v0.9.1 Installing 6 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 121.9 KiB Installed artifact oneTBB 435.6 KiB Installed artifact Libiconv 1.9 MiB Installed artifact XML2 2.5 MiB Installed artifact SBML 5.8 MiB Updating `~/.julia/environments/v1.13/Project.toml` [210efffb] + SBMLImporter v3.0.3 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.16.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.19.0 [4c555306] + ArrayLayouts v1.11.2 [e2ed5e7c] + Bijections v0.2.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.7.0 [70df07ce] + BracketingNonlinearSolve v1.3.0 [2a0fbf3d] + CPUSummary v0.2.7 [479239e8] + Catalyst v15.0.8 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [861a8166] + Combinatorics v1.0.3 [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.0 [b0b7db55] + ComponentArrays v0.15.29 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [2b5f629d] + DiffEqBase v6.183.0 [459566f4] + DiffEqCallbacks v4.9.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 ⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54 [8d63f2c5] + DispatchDoctor v0.4.26 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [5b8099bc] + DomainSets v0.7.16 [7c1d4256] + DynamicPolynomials v0.6.2 [06fc5a27] + DynamicQuantities v1.8.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.12 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.3 [1a297f60] + FillArrays v1.13.0 [64ca27bc] + FindFirstFunctions v1.4.1 [6a86dc24] + FiniteDiff v2.27.0 [1fa38f19] + Format v1.3.7 ⌅ [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.0 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.3 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.1.6 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.16.1 [ba0b0d4f] + Krylov v0.10.1 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.8 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.6.2 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [7ed4a6bd] + LinearSolve v3.27.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 ⌅ [961ee093] + ModelingToolkit v9.82.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [8913a72c] + NonlinearSolve v4.10.0 [be0214bd] + NonlinearSolveBase v1.14.0 [5959db7a] + NonlinearSolveFirstOrder v1.7.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.8.0 [26075421] + NonlinearSolveSpectralMethods v1.3.0 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.6 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [b4db0fb7] + ReactionNetworkImporters v0.16.1 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.36.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [e5567a89] + SBML v1.6.0 [210efffb] + SBMLImporter v3.0.3 [9dfe8606] + SCCNonlinearSolve v1.4.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.108.0 [19f34311] + SciMLJacobianOperators v0.1.8 [c0aeaf25] + SciMLOperators v1.4.0 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.7.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [0a514795] + SparseMatrixColorings v0.4.21 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [7792a7ef] + StrideArraysCore v0.5.7 [892a3eda] + StringManipulation v0.4.1 [2efcf032] + SymbolicIndexingInterface v0.3.42 [19f23fe9] + SymbolicLimits v0.2.2 [d1185830] + SymbolicUtils v3.30.0 [0c5d862f] + Symbolics v6.49.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [410a4b4d] + Tricks v0.1.12 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.24.0 [a7c27f48] + Unityper v0.1.6 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [bb12108a] + SBML_jll v5.20.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.6+1 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 15.56s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4389.8 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 2 direct dependencies failed to precompile: SBMLImporterForwardDiffExt Failed to precompile SBMLImporterForwardDiffExt [d6d8a103-f425-51d9-b057-eb1f510ef1c9] to "/home/pkgeval/.julia/compiled/v1.13/SBMLImporterForwardDiffExt/jl_c1I2RY" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `t` not defined in `SBMLImporter` The binding may be too new: running in world age 39816, while current world is 39840. Stacktrace: [1] _get_reaction_system(model_SBML_sys::SBMLImporter.ModelSBMLSystem, model_SBML::SBMLImporter.ModelSBML) @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/system.jl:43 [2] load_SBML(path::String; massaction::Bool, complete::Bool, ifelse_to_callback::Bool, write_to_file::Bool, inline_assignment_rules::Bool, inline_kineticlaw_parameters::Bool, model_as_string::Bool) @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/load.jl:84 [3] load_SBML(path::String) @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/load.jl:74 [4] macro expansion @ ~/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:52 [inlined] [5] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [6] top-level scope @ ~/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:118 [7] include(mod::Module, _path::String) @ Base ./Base.jl:311 [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3001 [9] top-level scope @ stdin:5 [10] eval(m::Module, e::Any) @ Core ./boot.jl:489 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [12] include_string @ ./loading.jl:2857 [inlined] [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [14] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile SBMLImporter [210efffb-c3c8-456d-a807-6f55560b12fe] to "/home/pkgeval/.julia/compiled/v1.13/SBMLImporter/jl_H9WMQR" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3288 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3166 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2653 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#235 @ ./reflection.jl:1333 [inlined] [9] invokelatest_gr @ ./reflection.jl:1325 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3859 [11] maybe_cachefile_lock @ ./loading.jl:3856 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2639 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2468 [14] macro expansion @ ./loading.jl:2396 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [17] require @ ./loading.jl:2336 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/SBMLImporter/yj2XS/ext/SBMLImporterForwardDiffExt.jl:4 [22] include(mod::Module, _path::String) @ Base ./Base.jl:311 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3001 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [27] include_string @ ./loading.jl:2857 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [29] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/yj2XS/ext/SBMLImporterForwardDiffExt.jl:1 in expression starting at stdin:5 SBMLImporter Failed to precompile SBMLImporter [210efffb-c3c8-456d-a807-6f55560b12fe] to "/home/pkgeval/.julia/compiled/v1.13/SBMLImporter/jl_198RjF" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `t` not defined in `SBMLImporter` The binding may be too new: running in world age 39816, while current world is 39840. Stacktrace: [1] _get_reaction_system(model_SBML_sys::SBMLImporter.ModelSBMLSystem, model_SBML::SBMLImporter.ModelSBML) @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/system.jl:43 [2] load_SBML(path::String; massaction::Bool, complete::Bool, ifelse_to_callback::Bool, write_to_file::Bool, inline_assignment_rules::Bool, inline_kineticlaw_parameters::Bool, model_as_string::Bool) @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/load.jl:84 [3] load_SBML(path::String) @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/load.jl:74 [4] macro expansion @ ~/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:52 [inlined] [5] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [6] top-level scope @ ~/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:118 [7] include(mod::Module, _path::String) @ Base ./Base.jl:311 [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3001 [9] top-level scope @ stdin:5 [10] eval(m::Module, e::Any) @ Core ./boot.jl:489 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [12] include_string @ ./loading.jl:2857 [inlined] [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [14] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:1 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 2267.36s ################################################################################ # Testing # Testing SBMLImporter Status `/tmp/jl_CrymJY/Project.toml` [4c88cf16] Aqua v0.8.14 [336ed68f] CSV v0.10.15 [479239e8] Catalyst v15.0.8 [b0b7db55] ComponentArrays v0.15.29 [a93c6f00] DataFrames v1.7.0 [2b5f629d] DiffEqBase v6.183.0 [ccbc3e58] JumpProcesses v9.16.1 ⌅ [961ee093] ModelingToolkit v9.82.0 [6ad6398a] OrdinaryDiffEqBDF v1.8.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.14.0 [aea7be01] PrecompileTools v1.3.2 [b4db0fb7] ReactionNetworkImporters v0.16.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.15 [e5567a89] SBML v1.6.0 [210efffb] SBMLImporter v3.0.3 [1bc83da4] SafeTestsets v0.1.0 [0bca4576] SciMLBase v2.108.0 [efcf1570] Setfield v1.1.2 [276daf66] SpecialFunctions v2.5.1 [f43a241f] Downloads v1.7.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_CrymJY/Manifest.toml` [47edcb42] ADTypes v1.16.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.19.0 [4c555306] ArrayLayouts v1.11.2 [e2ed5e7c] Bijections v0.2.2 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.7.0 [70df07ce] BracketingNonlinearSolve v1.3.0 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.15 [479239e8] Catalyst v15.0.8 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.0.3 [a80b9123] CommonMark v0.9.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [b0b7db55] ComponentArrays v0.15.29 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [2b5f629d] DiffEqBase v6.183.0 [459566f4] DiffEqCallbacks v4.9.0 [77a26b50] DiffEqNoiseProcess v5.24.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 ⌅ [a0c0ee7d] DifferentiationInterface v0.6.54 [8d63f2c5] DispatchDoctor v0.4.26 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [5b8099bc] DomainSets v0.7.16 [7c1d4256] DynamicPolynomials v0.6.2 [06fc5a27] DynamicQuantities v1.8.0 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.12 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.1.3 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [64ca27bc] FindFirstFunctions v1.4.1 [6a86dc24] FiniteDiff v2.27.0 [1fa38f19] Format v1.3.7 ⌅ [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [c27321d9] Glob v1.3.1 [86223c79] Graphs v1.13.0 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.4 [18e54dd8] IntegerMathUtils v0.1.3 [8197267c] IntervalSets v0.7.11 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] 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NonlinearSolveQuasiNewton v1.8.0 [26075421] NonlinearSolveSpectralMethods v1.3.0 [6fe1bfb0] OffsetArrays v1.17.0 [429524aa] Optim v1.13.2 [bac558e1] OrderedCollections v1.8.1 [6ad6398a] OrdinaryDiffEqBDF v1.8.0 [bbf590c4] OrdinaryDiffEqCore v1.28.0 [4302a76b] OrdinaryDiffEqDifferentiation v1.11.0 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.12.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.14.0 [2d112036] OrdinaryDiffEqSDIRK v1.5.0 [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [e409e4f3] PoissonRandom v0.4.6 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [d236fae5] PreallocationTools v0.4.31 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [27ebfcd6] Primes v0.5.7 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [74087812] Random123 v1.7.1 [e6cf234a] RandomNumbers v1.6.0 [b4db0fb7] ReactionNetworkImporters v0.16.1 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v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... Info Given SBMLImporter was explicitly requested, output will be shown live  ERROR: LoadError: UndefVarError: `t` not defined in `SBMLImporter` The binding may be too new: running in world age 39816, while current world is 39840. Stacktrace:  [1] _get_reaction_system(model_SBML_sys::SBMLImporter.ModelSBMLSystem, model_SBML::SBMLImporter.ModelSBML)  @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/system.jl:43  [2] load_SBML(path::String; massaction::Bool, complete::Bool, ifelse_to_callback::Bool, write_to_file::Bool, inline_assignment_rules::Bool, inline_kineticlaw_parameters::Bool, model_as_string::Bool)  @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/load.jl:84  [3] load_SBML(path::String)  @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/load.jl:74  [4] macro expansion  @ ~/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:52 [inlined]  [5] macro expansion  @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined]  [6] top-level scope  @ ~/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:118  [7] include(mod::Module, _path::String)  @ Base ./Base.jl:311  [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3001  [9] top-level scope  @ stdin:5  [10] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2847  [12] include_string  @ ./loading.jl:2857 [inlined]  [13] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:318  [14] _start()  @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:1 in expression starting at stdin:5 ✗ SBMLImporter ✗ SBMLImporter → SBMLImporterForwardDiffExt 0 dependencies successfully precompiled in 204 seconds. 313 already precompiled. Aqua Quality Check: Error During Test at /home/pkgeval/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:30 Got exception outside of a @test LoadError: The following 2 direct dependencies failed to precompile: SBMLImporterForwardDiffExt Failed to precompile SBMLImporterForwardDiffExt [d6d8a103-f425-51d9-b057-eb1f510ef1c9] to "/home/pkgeval/.julia/compiled/v1.13/SBMLImporterForwardDiffExt/jl_ivMeVa" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `t` not defined in `SBMLImporter` The binding may be too new: running in world age 39816, while current world is 39840. Stacktrace: [1] _get_reaction_system(model_SBML_sys::SBMLImporter.ModelSBMLSystem, model_SBML::SBMLImporter.ModelSBML) @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/system.jl:43 [2] load_SBML(path::String; massaction::Bool, complete::Bool, ifelse_to_callback::Bool, write_to_file::Bool, inline_assignment_rules::Bool, inline_kineticlaw_parameters::Bool, model_as_string::Bool) @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/load.jl:84 [3] load_SBML(path::String) @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/load.jl:74 [4] macro expansion @ ~/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:52 [inlined] [5] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [6] top-level scope @ ~/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:118 [7] include(mod::Module, _path::String) @ Base ./Base.jl:311 [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3001 [9] top-level scope @ stdin:5 [10] eval(m::Module, e::Any) @ Core ./boot.jl:489 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [12] include_string @ ./loading.jl:2857 [inlined] [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [14] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile SBMLImporter [210efffb-c3c8-456d-a807-6f55560b12fe] to "/home/pkgeval/.julia/compiled/v1.13/SBMLImporter/jl_qgutS6" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3288 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3166 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2653 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#235 @ ./reflection.jl:1333 [inlined] [9] invokelatest_gr @ ./reflection.jl:1325 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3859 [11] maybe_cachefile_lock @ ./loading.jl:3856 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2639 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2468 [14] macro expansion @ ./loading.jl:2396 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [17] require @ ./loading.jl:2336 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/SBMLImporter/yj2XS/ext/SBMLImporterForwardDiffExt.jl:4 [22] include(mod::Module, _path::String) @ Base ./Base.jl:311 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3001 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [27] include_string @ ./loading.jl:2857 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [29] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/yj2XS/ext/SBMLImporterForwardDiffExt.jl:1 in expression starting at stdin:5 SBMLImporter Failed to precompile SBMLImporter [210efffb-c3c8-456d-a807-6f55560b12fe] to "/home/pkgeval/.julia/compiled/v1.13/SBMLImporter/jl_QmpQQl" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `t` not defined in `SBMLImporter` The binding may be too new: running in world age 39816, while current world is 39840. Stacktrace: [1] _get_reaction_system(model_SBML_sys::SBMLImporter.ModelSBMLSystem, model_SBML::SBMLImporter.ModelSBML) @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/system.jl:43 [2] load_SBML(path::String; massaction::Bool, complete::Bool, ifelse_to_callback::Bool, write_to_file::Bool, inline_assignment_rules::Bool, inline_kineticlaw_parameters::Bool, model_as_string::Bool) @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/load.jl:84 [3] load_SBML(path::String) @ SBMLImporter ~/.julia/packages/SBMLImporter/yj2XS/src/load.jl:74 [4] macro expansion @ ~/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:52 [inlined] [5] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [6] top-level scope @ ~/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:118 [7] include(mod::Module, _path::String) @ Base ./Base.jl:311 [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3001 [9] top-level scope @ stdin:5 [10] eval(m::Module, e::Any) @ Core ./boot.jl:489 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [12] include_string @ ./loading.jl:2857 [inlined] [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [14] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/yj2XS/src/SBMLImporter.jl:1 in expression starting at stdin:5 in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/yj2XS/test/aqua.jl:2 Test Summary: | Error Total Time Aqua Quality Check | 1 1 3m27.9s RNG of the outermost testset: Random.Xoshiro(0x0aca051d5c0549a6, 0xf7468d97a444094a, 0x181017b830948fef, 0xf1a77f444e58a550, 0x04829f5b6024ba5f) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/yj2XS/test/runtests.jl:5 Testing failed after 221.07s ERROR: LoadError: Package SBMLImporter errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2695 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2544 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:311 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [14] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 2561.96s: package fails to precompile