Package evaluation of RCall on Julia 1.13.0-DEV.971 (04e26c5eae*) started at 2025-08-10T19:10:56.271 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.78s ################################################################################ # Installation # Installing RCall... Resolving package versions... Installed InlineStrings ─────────────── v1.4.4 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed VersionParsing ────────────── v1.3.0 Installed AliasTables ───────────────── v1.1.3 Installed HypergeometricFunctions ───── v0.3.28 Installed DataStructures ────────────── v0.18.22 Installed StatsModels ───────────────── v0.7.5 Installed RCall ─────────────────────── v0.14.9 Installed StatsBase ─────────────────── v0.34.6 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed ShiftedArrays ─────────────── v2.0.0 Installed Compat ────────────────────── v4.18.0 Installed OrderedCollections ────────── v1.8.1 Installed InvertedIndices ───────────── v1.3.1 Installed DataAPI ───────────────────── v1.16.0 Installed Statistics ────────────────── v1.11.1 Installed PrecompileTools ───────────── v1.3.2 Installed DataValueInterfaces ───────── v1.0.0 Installed SentinelArrays ────────────── v1.4.8 Installed StatsAPI ──────────────────── v1.7.1 Installed WinReg ────────────────────── v1.0.0 Installed Conda ─────────────────────── v1.10.2 Installed IrrationalConstants ───────── v0.2.4 Installed Requires ──────────────────── v1.3.1 Installed StringManipulation ────────── v0.4.1 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Rmath ─────────────────────── v0.8.0 Installed Parsers ───────────────────── v2.8.3 Installed LogExpFunctions ───────────── v0.3.29 Installed JSON ──────────────────────── v0.21.4 Installed Tables ────────────────────── v1.12.1 Installed StatsFuns ─────────────────── v1.5.0 Installed PrettyTables ──────────────── v2.4.0 Installed PtrArrays ─────────────────── v1.3.0 Installed Reexport ──────────────────── v1.2.2 Installed Missings ──────────────────── v1.2.0 Installed PooledArrays ──────────────── v1.4.3 Installed SpecialFunctions ──────────── v2.5.1 Installed JLLWrappers ───────────────── v1.7.1 Installed Preferences ───────────────── v1.4.3 Installed DataFrames ────────────────── v1.7.0 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed Crayons ───────────────────── v4.1.1 Installed DocStringExtensions ───────── v0.9.5 Installed CategoricalArrays ─────────── v1.0.1 Installed SortingAlgorithms ─────────── v1.2.2 Installing 2 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 121.9 KiB Updating `~/.julia/environments/v1.13/Project.toml` [6f49c342] + RCall v0.14.9 Updating `~/.julia/environments/v1.13/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [324d7699] + CategoricalArrays v1.0.1 [34da2185] + Compat v4.18.0 [8f4d0f93] + Conda v1.10.2 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.5 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.4 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [6f49c342] + RCall v0.14.9 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.5 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [81def892] + VersionParsing v1.3.0 [1b915085] + WinReg v1.0.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+1 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building RCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/7521292e0ca900751cf0f35f2a2faf1cb321e960/build.log` Installation completed after 133.53s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4051.8 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 27 already precompiled. Precompiling package dependencies... Precompilation completed after 495.42s ################################################################################ # Testing # Testing RCall Status `/tmp/jl_OzVdF8/Project.toml` [39de3d68] AxisArrays v0.4.7 [324d7699] CategoricalArrays v1.0.1 [8f4d0f93] Conda v1.10.2 [992eb4ea] CondaPkg v0.2.29 [a93c6f00] DataFrames v1.7.0 ⌅ [864edb3b] DataStructures v0.18.22 [7073ff75] IJulia v1.29.2 [21216c6a] Preferences v1.4.3 [6f49c342] RCall v0.14.9 [3eaba693] StatsModels v0.7.5 [98d24dd4] TestSetExtensions v3.0.0 [44d3d7a6] Weave v0.10.12 [1b915085] WinReg v1.0.0 [ade2ca70] Dates v1.11.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.13.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_OzVdF8/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [39de3d68] AxisArrays v0.4.7 [324d7699] CategoricalArrays v1.0.1 [34da2185] Compat v4.18.0 [8f4d0f93] Conda v1.10.2 [992eb4ea] CondaPkg v0.2.29 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [ab62b9b5] DeepDiffs v1.2.0 [ffbed154] DocStringExtensions v0.9.5 [eafb193a] Highlights v0.5.3 [34004b35] HypergeometricFunctions v0.3.28 [7073ff75] IJulia v1.29.2 [842dd82b] InlineStrings v1.4.4 [8197267c] IntervalSets v0.7.11 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [0b3b1443] MicroMamba v0.1.14 [e1d29d7a] Missings v1.2.0 [ffc61752] Mustache v1.0.21 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [6f49c342] RCall v0.14.9 [b3c3ace0] RangeArrays v0.3.2 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [b85f4697] SoftGlobalScope v1.1.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.5.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [3eaba693] StatsModels v0.7.5 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [98d24dd4] TestSetExtensions v3.0.0 [81def892] VersionParsing v1.3.0 [44d3d7a6] Weave v0.10.12 [1b915085] WinReg v1.0.0 [ddb6d928] YAML v0.4.14 [c2297ded] ZMQ v1.4.1 [94ce4f54] Libiconv_jll v1.18.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [8f1865be] ZeroMQ_jll v4.3.6+0 [a9144af2] libsodium_jll v1.0.21+0 ⌅ [f8abcde7] micromamba_jll v1.5.12+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ..... Test Summary: | Pass Total Time installation | 5 5 14.2s ┌ Info: └ R_PPSTACKTOP_INITIAL = 8589934592 ┌ Warning: RCall.jl: Warning: Your system is mis-configured: ‘/var/db/timezone/localtime’ is not a symlink │ Warning: ‘/var/db/timezone/localtime’ is not identical to any known timezone file └ @ RCall ~/.julia/packages/RCall/GLHIY/src/io.jl:171 RObject{VecSxp} R version 4.5.1 (2025-06-13) Platform: x86_64-conda-linux-gnu Running under: Debian GNU/Linux 12 (bookworm) Matrix products: default BLAS/LAPACK: /home/pkgeval/.julia/conda/3/x86_64/lib/libopenblasp-r0.3.29.so; LAPACK version 3.12.0 locale: [1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C [3] LC_TIME=C.UTF-8 LC_COLLATE=C.UTF-8 [5] LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8 [7] LC_PAPER=C.UTF-8 LC_NAME=C.UTF-8 [9] LC_ADDRESS=C.UTF-8 LC_TELEPHONE=C.UTF-8 [11] LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C.UTF-8 time zone: NA tzcode source: system (glibc) attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] compiler_4.5.1 RObject{VecSxp} $MBCS [1] TRUE $`UTF-8` [1] TRUE $`Latin-1` [1] FALSE $codeset [1] "UTF-8" ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................┌ Warning: RCall.jl: Loading required package: MASS │ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : │ there is no package called ‘MASS’ └ @ RCall ~/.julia/packages/RCall/GLHIY/src/io.jl:171 ┌ Info: └ has_mass_package = false ┌ Warning: RCall.jl: Loading required package: ape │ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : │ there is no package called ‘ape’ └ @ RCall ~/.julia/packages/RCall/GLHIY/src/io.jl:171 [ Info: installing ape to temporary lib sh: 1: wget: not found sh: 1: wget: not found sh: 1: wget: not found ┌ Warning: RCall.jl: Warning: unable to access index for repository https://cloud.r-project.org/src/contrib: │ 'wget' call had nonzero exit status │ Warning: package ‘ape’ is not available for this version of R │ │ A version of this package for your version of R might be available elsewhere, │ see the ideas at │ https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages └ @ RCall ~/.julia/packages/RCall/GLHIY/src/io.jl:171 ===================================================== namespaces: Error During Test at /home/pkgeval/.julia/packages/RCall/GLHIY/test/runtests.jl:71 Got exception outside of a @test LoadError: REvalError: Error in library("ape") : there is no package called ‘ape’ Stacktrace: [1] handle_eval_stderr(; as_warning::Bool) @ RCall ~/.julia/packages/RCall/GLHIY/src/io.jl:173 [2] handle_eval_stderr @ ~/.julia/packages/RCall/GLHIY/src/io.jl:167 [inlined] [3] reval_p(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/GLHIY/src/eval.jl:103 [4] reval_p(expr::Ptr{RCall.ExprSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/GLHIY/src/eval.jl:119 [5] reval(str::String, env::RObject{EnvSxp}) @ RCall ~/.julia/packages/RCall/GLHIY/src/eval.jl:136 [6] reval(str::String) @ RCall ~/.julia/packages/RCall/GLHIY/src/eval.jl:136 [7] top-level scope @ ~/.julia/packages/RCall/GLHIY/test/namespaces.jl:30 [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [9] top-level scope @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:72 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [11] macro expansion @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:72 [inlined] [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] macro expansion @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:71 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [15] top-level scope @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:48 [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [17] top-level scope @ none:6 [18] eval(m::Module, e::Any) @ Core ./boot.jl:489 [19] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [20] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/RCall/GLHIY/test/namespaces.jl:5 ===================================================== ===================================================== repl: Error During Test at /home/pkgeval/.julia/packages/RCall/GLHIY/test/runtests.jl:71 Got exception outside of a @test LoadError: UndefRefError: access to undefined reference Stacktrace: [1] getproperty @ ./Base_compiler.jl:57 [inlined] [2] repl_init(repl::LineEditREPL) @ RCall.RPrompt ~/.julia/packages/RCall/GLHIY/src/RPrompt.jl:228 [3] top-level scope @ ~/.julia/packages/RCall/GLHIY/test/repl.jl:53 [4] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [5] top-level scope @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:72 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [7] macro expansion @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:72 [inlined] [8] eval(m::Module, e::Any) @ Core ./boot.jl:489 [9] macro expansion @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:71 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [11] top-level scope @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:48 [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [16] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/RCall/GLHIY/test/repl.jl:53 ===================================================== [ Info: Installing 'julia 1.13.0-DEV' kernelspec in /home/pkgeval/.local/share/jupyter/kernels/julia-1.13 [ Info: Running `conda install -q -y jupyter` in root environment Channels: - r - defaults - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64 added / updated specs: - jupyter The following packages will be downloaded: package | build ---------------------------|----------------- alsa-lib-1.2.14 | h5eee18b_0 610 KB anyio-4.7.0 | py312h06a4308_0 263 KB argon2-cffi-21.3.0 | pyhd3eb1b0_0 15 KB argon2-cffi-bindings-21.2.0| py312h5eee18b_1 33 KB asttokens-3.0.0 | py312h06a4308_0 47 KB async-lru-2.0.4 | py312h06a4308_0 20 KB attr-2.5.1 | h166bdaf_1 69 KB conda-forge attrs-24.3.0 | py312h06a4308_0 172 KB babel-2.16.0 | py312h06a4308_0 6.9 MB beautifulsoup4-4.13.4 | py312h06a4308_0 337 KB bleach-6.2.0 | py312h06a4308_0 362 KB comm-0.2.1 | py312h06a4308_0 16 KB cyrus-sasl-2.1.28 | h1110e0f_3 242 KB dbus-1.13.18 | hb2f20db_0 504 KB debugpy-1.8.11 | py312h6a678d5_0 2.7 MB decorator-5.1.1 | pyhd3eb1b0_0 12 KB defusedxml-0.7.1 | pyhd3eb1b0_0 23 KB executing-0.8.3 | pyhd3eb1b0_0 18 KB expat-2.7.1 | h6a678d5_0 182 KB gettext-0.25.1 | h3f43e3d_1 529 KB conda-forge gettext-tools-0.25.1 | h3f43e3d_1 3.5 MB conda-forge glib-2.84.3 | h89d24bf_0 596 KB conda-forge glib-tools-2.84.3 | hf516916_0 114 KB conda-forge gst-plugins-base-1.24.11 | h651a532_0 2.7 MB conda-forge gstreamer-1.24.11 | hc37bda9_0 1.9 MB conda-forge h11-0.16.0 | py312h06a4308_0 63 KB httpcore-1.0.9 | py312h06a4308_0 123 KB httpx-0.28.1 | py312h06a4308_0 218 KB ipykernel-6.29.5 | py312h06a4308_1 252 KB ipython-9.1.0 | py312h06a4308_0 1.2 MB ipython_pygments_lexers-1.1.1| py312h06a4308_0 17 KB ipywidgets-8.1.5 | py312h06a4308_0 245 KB jedi-0.19.2 | py312h06a4308_0 1.2 MB jinja2-3.1.6 | py312h06a4308_0 352 KB json5-0.9.25 | py312h06a4308_0 53 KB jsonschema-4.25.0 | py312h06a4308_0 200 KB jsonschema-specifications-2023.7.1| py312h06a4308_0 15 KB jupyter-1.1.1 | py312h06a4308_0 8 KB jupyter-lsp-2.2.5 | py312h06a4308_0 114 KB jupyter_client-8.6.3 | py312h06a4308_0 231 KB jupyter_console-6.6.3 | py312h06a4308_1 52 KB jupyter_core-5.8.1 | py312h06a4308_0 95 KB jupyter_events-0.12.0 | py312h06a4308_0 42 KB jupyter_server-2.16.0 | py312h06a4308_0 596 KB jupyter_server_terminals-0.5.3| py312h06a4308_0 28 KB jupyterlab-4.4.4 | py312h06a4308_0 5.8 MB jupyterlab_pygments-0.3.0 | py312h06a4308_0 18 KB jupyterlab_server-2.27.3 | py312h06a4308_0 111 KB jupyterlab_widgets-3.0.15 | py312h06a4308_0 198 KB lame-3.100 | h7b6447c_0 323 KB libasprintf-0.25.1 | h3f43e3d_1 52 KB conda-forge libasprintf-devel-0.25.1 | h3f43e3d_1 34 KB conda-forge libcap-2.75 | h39aace5_0 118 KB conda-forge libclang-cpp20.1-20.1.8 |default_hddf928d_0 20.3 MB conda-forge libclang13-20.1.8 |default_ha444ac7_0 11.8 MB conda-forge libcups-2.3.3 | hb8b1518_5 4.3 MB conda-forge libdrm-2.4.124 | h5eee18b_0 320 KB libegl-1.7.0 | h5eee18b_2 44 KB libevent-2.1.12 | hdbd6064_1 453 KB libflac-1.4.3 | h59595ed_0 385 KB conda-forge libgcrypt-lib-1.11.1 | hb9d3cd8_0 577 KB conda-forge libgettextpo-0.25.1 | h3f43e3d_1 184 KB conda-forge libgettextpo-devel-0.25.1 | h3f43e3d_1 37 KB conda-forge libgl-1.7.0 | h5eee18b_2 149 KB libglvnd-1.7.0 | h5eee18b_2 140 KB libglx-1.7.0 | h5eee18b_2 87 KB libgpg-error-1.55 | h3f2d84a_0 305 KB conda-forge libkrb5-1.21.3 | h520c7b4_3 878 KB libllvm20-20.1.8 | hecd9e04_0 41.9 MB conda-forge libogg-1.3.5 | h27cfd23_1 199 KB libopus-1.5.2 | hd0c01bc_0 305 KB conda-forge libpciaccess-0.18 | h5eee18b_0 26 KB libpq-17.5 | h27ae623_0 2.6 MB conda-forge libsndfile-1.2.2 | hc60ed4a_1 346 KB conda-forge libsodium-1.0.18 | h7b6447c_0 244 KB libsystemd0-257.7 | h4e0b6ca_0 477 KB conda-forge libvorbis-1.3.7 | h7b6447c_0 398 KB libxkbcommon-1.11.0 | he8b52b9_0 773 KB conda-forge lmdb-0.9.29 | h2531618_0 424 KB markupsafe-3.0.2 | py312h5eee18b_0 26 KB matplotlib-inline-0.1.6 | py312h06a4308_0 18 KB mistune-3.1.2 | py312h06a4308_0 145 KB mpg123-1.32.9 | hc50e24c_0 480 KB conda-forge nbclient-0.10.2 | py312h06a4308_0 53 KB nbconvert-7.16.6 | py312h06a4308_0 7 KB nbconvert-core-7.16.6 | py312h06a4308_0 510 KB nbconvert-pandoc-7.16.6 | py312h06a4308_0 7 KB nbformat-5.10.4 | py312h06a4308_0 157 KB nest-asyncio-1.6.0 | py312h06a4308_0 16 KB notebook-7.4.4 | py312h06a4308_0 6.0 MB notebook-shim-0.2.4 | py312h06a4308_0 26 KB nspr-4.37 | h29cc59b_0 226 KB conda-forge nss-3.114 | hc3c8bcf_0 1.9 MB conda-forge openldap-2.6.10 | he970967_0 762 KB conda-forge overrides-7.4.0 | py312h06a4308_0 36 KB pandoc-2.12 | h06a4308_3 10.5 MB pandocfilters-1.5.0 | pyhd3eb1b0_0 11 KB parso-0.8.4 | py312h06a4308_0 233 KB pexpect-4.9.0 | py312h06a4308_0 157 KB ply-3.11 | py312h06a4308_1 109 KB prometheus_client-0.21.1 | py312h06a4308_0 151 KB prompt-toolkit-3.0.43 | py312h06a4308_0 732 KB prompt_toolkit-3.0.43 | hd3eb1b0_0 5 KB psutil-5.9.0 | py312h5eee18b_1 482 KB ptyprocess-0.7.0 | pyhd3eb1b0_2 17 KB pulseaudio-client-17.0 | hac146a9_1 746 KB conda-forge pure_eval-0.2.2 | pyhd3eb1b0_0 14 KB pygments-2.19.1 | py312h06a4308_0 2.2 MB pyqt-5.15.10 | py312h6a678d5_1 5.7 MB pyqt5-sip-12.13.0 | py312h5eee18b_1 96 KB python-dateutil-2.9.0post0 | py312h06a4308_2 318 KB python-fastjsonschema-2.20.0| py312h06a4308_0 260 KB python-json-logger-3.2.1 | py312h06a4308_0 27 KB pyyaml-6.0.2 | py312h5eee18b_0 217 KB pyzmq-26.2.0 | py312h6a678d5_0 387 KB qt-main-5.15.15 | hea1682b_4 50.1 MB conda-forge qtconsole-5.6.1 | py312h06a4308_1 264 KB qtpy-2.4.1 | py312h06a4308_0 120 KB referencing-0.30.2 | py312h06a4308_0 73 KB rfc3339-validator-0.1.4 | py312h06a4308_0 9 KB rfc3986-validator-0.1.1 | py312h06a4308_0 9 KB rpds-py-0.22.3 | py312h4aa5aa6_0 371 KB send2trash-1.8.2 | py312h06a4308_1 31 KB sip-6.7.12 | py312h6a678d5_1 598 KB six-1.17.0 | py312h06a4308_0 36 KB sniffio-1.3.0 | py312h06a4308_0 16 KB soupsieve-2.5 | py312h06a4308_0 84 KB stack_data-0.2.0 | pyhd3eb1b0_0 22 KB terminado-0.17.1 | py312h06a4308_0 38 KB tinycss2-1.4.0 | py312h06a4308_0 109 KB tornado-6.5.1 | py312h5eee18b_0 875 KB traitlets-5.14.3 | py312h06a4308_0 219 KB typing-extensions-4.12.2 | py312h06a4308_0 9 KB typing_extensions-4.12.2 | py312h06a4308_0 79 KB wcwidth-0.2.13 | py312h06a4308_0 73 KB webencodings-0.5.1 | py312h06a4308_2 25 KB websocket-client-1.8.0 | py312h06a4308_0 116 KB widgetsnbextension-4.0.13 | py312h06a4308_0 969 KB xcb-util-0.4.1 | h5eee18b_2 19 KB xcb-util-image-0.4.0 | h5eee18b_2 23 KB xcb-util-keysyms-0.4.1 | h5eee18b_0 13 KB xcb-util-renderutil-0.3.10 | h5eee18b_0 16 KB xcb-util-wm-0.4.2 | h5eee18b_0 55 KB xkeyboard-config-2.44 | h5eee18b_0 411 KB xorg-libxdamage-1.1.6 | h9b100fa_0 12 KB xorg-libxfixes-6.0.1 | h9b100fa_0 18 KB xorg-libxshmfence-1.3.3 | h9b100fa_0 11 KB xorg-libxxf86vm-1.1.6 | h9b100fa_0 16 KB yaml-0.2.5 | h7b6447c_0 75 KB zeromq-4.3.5 | h6a678d5_0 366 KB ------------------------------------------------------------ Total: 208.5 MB The following NEW packages will be INSTALLED: alsa-lib pkgs/main/linux-64::alsa-lib-1.2.14-h5eee18b_0 anyio pkgs/main/linux-64::anyio-4.7.0-py312h06a4308_0 argon2-cffi pkgs/main/noarch::argon2-cffi-21.3.0-pyhd3eb1b0_0 argon2-cffi-bindi~ pkgs/main/linux-64::argon2-cffi-bindings-21.2.0-py312h5eee18b_1 asttokens pkgs/main/linux-64::asttokens-3.0.0-py312h06a4308_0 async-lru pkgs/main/linux-64::async-lru-2.0.4-py312h06a4308_0 attr conda-forge/linux-64::attr-2.5.1-h166bdaf_1 attrs pkgs/main/linux-64::attrs-24.3.0-py312h06a4308_0 babel pkgs/main/linux-64::babel-2.16.0-py312h06a4308_0 beautifulsoup4 pkgs/main/linux-64::beautifulsoup4-4.13.4-py312h06a4308_0 bleach pkgs/main/linux-64::bleach-6.2.0-py312h06a4308_0 comm pkgs/main/linux-64::comm-0.2.1-py312h06a4308_0 cyrus-sasl pkgs/main/linux-64::cyrus-sasl-2.1.28-h1110e0f_3 dbus pkgs/main/linux-64::dbus-1.13.18-hb2f20db_0 debugpy pkgs/main/linux-64::debugpy-1.8.11-py312h6a678d5_0 decorator pkgs/main/noarch::decorator-5.1.1-pyhd3eb1b0_0 defusedxml pkgs/main/noarch::defusedxml-0.7.1-pyhd3eb1b0_0 executing pkgs/main/noarch::executing-0.8.3-pyhd3eb1b0_0 expat pkgs/main/linux-64::expat-2.7.1-h6a678d5_0 gettext conda-forge/linux-64::gettext-0.25.1-h3f43e3d_1 gettext-tools conda-forge/linux-64::gettext-tools-0.25.1-h3f43e3d_1 glib conda-forge/linux-64::glib-2.84.3-h89d24bf_0 glib-tools conda-forge/linux-64::glib-tools-2.84.3-hf516916_0 gst-plugins-base conda-forge/linux-64::gst-plugins-base-1.24.11-h651a532_0 gstreamer conda-forge/linux-64::gstreamer-1.24.11-hc37bda9_0 h11 pkgs/main/linux-64::h11-0.16.0-py312h06a4308_0 httpcore pkgs/main/linux-64::httpcore-1.0.9-py312h06a4308_0 httpx pkgs/main/linux-64::httpx-0.28.1-py312h06a4308_0 ipykernel pkgs/main/linux-64::ipykernel-6.29.5-py312h06a4308_1 ipython pkgs/main/linux-64::ipython-9.1.0-py312h06a4308_0 ipython_pygments_~ pkgs/main/linux-64::ipython_pygments_lexers-1.1.1-py312h06a4308_0 ipywidgets pkgs/main/linux-64::ipywidgets-8.1.5-py312h06a4308_0 jedi pkgs/main/linux-64::jedi-0.19.2-py312h06a4308_0 jinja2 pkgs/main/linux-64::jinja2-3.1.6-py312h06a4308_0 json5 pkgs/main/linux-64::json5-0.9.25-py312h06a4308_0 jsonschema pkgs/main/linux-64::jsonschema-4.25.0-py312h06a4308_0 jsonschema-specif~ pkgs/main/linux-64::jsonschema-specifications-2023.7.1-py312h06a4308_0 jupyter pkgs/main/linux-64::jupyter-1.1.1-py312h06a4308_0 jupyter-lsp pkgs/main/linux-64::jupyter-lsp-2.2.5-py312h06a4308_0 jupyter_client pkgs/main/linux-64::jupyter_client-8.6.3-py312h06a4308_0 jupyter_console pkgs/main/linux-64::jupyter_console-6.6.3-py312h06a4308_1 jupyter_core pkgs/main/linux-64::jupyter_core-5.8.1-py312h06a4308_0 jupyter_events pkgs/main/linux-64::jupyter_events-0.12.0-py312h06a4308_0 jupyter_server pkgs/main/linux-64::jupyter_server-2.16.0-py312h06a4308_0 jupyter_server_te~ pkgs/main/linux-64::jupyter_server_terminals-0.5.3-py312h06a4308_0 jupyterlab pkgs/main/linux-64::jupyterlab-4.4.4-py312h06a4308_0 jupyterlab_pygmen~ pkgs/main/linux-64::jupyterlab_pygments-0.3.0-py312h06a4308_0 jupyterlab_server pkgs/main/linux-64::jupyterlab_server-2.27.3-py312h06a4308_0 jupyterlab_widgets pkgs/main/linux-64::jupyterlab_widgets-3.0.15-py312h06a4308_0 lame pkgs/main/linux-64::lame-3.100-h7b6447c_0 libasprintf conda-forge/linux-64::libasprintf-0.25.1-h3f43e3d_1 libasprintf-devel conda-forge/linux-64::libasprintf-devel-0.25.1-h3f43e3d_1 libcap conda-forge/linux-64::libcap-2.75-h39aace5_0 libclang-cpp20.1 conda-forge/linux-64::libclang-cpp20.1-20.1.8-default_hddf928d_0 libclang13 conda-forge/linux-64::libclang13-20.1.8-default_ha444ac7_0 libcups conda-forge/linux-64::libcups-2.3.3-hb8b1518_5 libdrm pkgs/main/linux-64::libdrm-2.4.124-h5eee18b_0 libegl pkgs/main/linux-64::libegl-1.7.0-h5eee18b_2 libevent pkgs/main/linux-64::libevent-2.1.12-hdbd6064_1 libflac conda-forge/linux-64::libflac-1.4.3-h59595ed_0 libgcrypt-lib conda-forge/linux-64::libgcrypt-lib-1.11.1-hb9d3cd8_0 libgettextpo conda-forge/linux-64::libgettextpo-0.25.1-h3f43e3d_1 libgettextpo-devel conda-forge/linux-64::libgettextpo-devel-0.25.1-h3f43e3d_1 libgl pkgs/main/linux-64::libgl-1.7.0-h5eee18b_2 libglvnd pkgs/main/linux-64::libglvnd-1.7.0-h5eee18b_2 libglx pkgs/main/linux-64::libglx-1.7.0-h5eee18b_2 libgpg-error conda-forge/linux-64::libgpg-error-1.55-h3f2d84a_0 libkrb5 pkgs/main/linux-64::libkrb5-1.21.3-h520c7b4_3 libllvm20 conda-forge/linux-64::libllvm20-20.1.8-hecd9e04_0 libogg pkgs/main/linux-64::libogg-1.3.5-h27cfd23_1 libopus conda-forge/linux-64::libopus-1.5.2-hd0c01bc_0 libpciaccess pkgs/main/linux-64::libpciaccess-0.18-h5eee18b_0 libpq conda-forge/linux-64::libpq-17.5-h27ae623_0 libsndfile conda-forge/linux-64::libsndfile-1.2.2-hc60ed4a_1 libsodium pkgs/main/linux-64::libsodium-1.0.18-h7b6447c_0 libsystemd0 conda-forge/linux-64::libsystemd0-257.7-h4e0b6ca_0 libvorbis pkgs/main/linux-64::libvorbis-1.3.7-h7b6447c_0 libxkbcommon conda-forge/linux-64::libxkbcommon-1.11.0-he8b52b9_0 lmdb pkgs/main/linux-64::lmdb-0.9.29-h2531618_0 markupsafe pkgs/main/linux-64::markupsafe-3.0.2-py312h5eee18b_0 matplotlib-inline pkgs/main/linux-64::matplotlib-inline-0.1.6-py312h06a4308_0 mistune pkgs/main/linux-64::mistune-3.1.2-py312h06a4308_0 mpg123 conda-forge/linux-64::mpg123-1.32.9-hc50e24c_0 nbclient pkgs/main/linux-64::nbclient-0.10.2-py312h06a4308_0 nbconvert pkgs/main/linux-64::nbconvert-7.16.6-py312h06a4308_0 nbconvert-core pkgs/main/linux-64::nbconvert-core-7.16.6-py312h06a4308_0 nbconvert-pandoc pkgs/main/linux-64::nbconvert-pandoc-7.16.6-py312h06a4308_0 nbformat pkgs/main/linux-64::nbformat-5.10.4-py312h06a4308_0 nest-asyncio pkgs/main/linux-64::nest-asyncio-1.6.0-py312h06a4308_0 notebook pkgs/main/linux-64::notebook-7.4.4-py312h06a4308_0 notebook-shim pkgs/main/linux-64::notebook-shim-0.2.4-py312h06a4308_0 nspr conda-forge/linux-64::nspr-4.37-h29cc59b_0 nss conda-forge/linux-64::nss-3.114-hc3c8bcf_0 openldap conda-forge/linux-64::openldap-2.6.10-he970967_0 overrides pkgs/main/linux-64::overrides-7.4.0-py312h06a4308_0 pandoc pkgs/main/linux-64::pandoc-2.12-h06a4308_3 pandocfilters pkgs/main/noarch::pandocfilters-1.5.0-pyhd3eb1b0_0 parso pkgs/main/linux-64::parso-0.8.4-py312h06a4308_0 pexpect pkgs/main/linux-64::pexpect-4.9.0-py312h06a4308_0 ply pkgs/main/linux-64::ply-3.11-py312h06a4308_1 prometheus_client pkgs/main/linux-64::prometheus_client-0.21.1-py312h06a4308_0 prompt-toolkit pkgs/main/linux-64::prompt-toolkit-3.0.43-py312h06a4308_0 prompt_toolkit pkgs/main/noarch::prompt_toolkit-3.0.43-hd3eb1b0_0 psutil pkgs/main/linux-64::psutil-5.9.0-py312h5eee18b_1 ptyprocess pkgs/main/noarch::ptyprocess-0.7.0-pyhd3eb1b0_2 pulseaudio-client conda-forge/linux-64::pulseaudio-client-17.0-hac146a9_1 pure_eval pkgs/main/noarch::pure_eval-0.2.2-pyhd3eb1b0_0 pygments pkgs/main/linux-64::pygments-2.19.1-py312h06a4308_0 pyqt pkgs/main/linux-64::pyqt-5.15.10-py312h6a678d5_1 pyqt5-sip pkgs/main/linux-64::pyqt5-sip-12.13.0-py312h5eee18b_1 python-dateutil pkgs/main/linux-64::python-dateutil-2.9.0post0-py312h06a4308_2 python-fastjsonsc~ pkgs/main/linux-64::python-fastjsonschema-2.20.0-py312h06a4308_0 python-json-logger pkgs/main/linux-64::python-json-logger-3.2.1-py312h06a4308_0 pyyaml pkgs/main/linux-64::pyyaml-6.0.2-py312h5eee18b_0 pyzmq pkgs/main/linux-64::pyzmq-26.2.0-py312h6a678d5_0 qt-main conda-forge/linux-64::qt-main-5.15.15-hea1682b_4 qtconsole pkgs/main/linux-64::qtconsole-5.6.1-py312h06a4308_1 qtpy pkgs/main/linux-64::qtpy-2.4.1-py312h06a4308_0 referencing pkgs/main/linux-64::referencing-0.30.2-py312h06a4308_0 rfc3339-validator pkgs/main/linux-64::rfc3339-validator-0.1.4-py312h06a4308_0 rfc3986-validator pkgs/main/linux-64::rfc3986-validator-0.1.1-py312h06a4308_0 rpds-py pkgs/main/linux-64::rpds-py-0.22.3-py312h4aa5aa6_0 send2trash pkgs/main/linux-64::send2trash-1.8.2-py312h06a4308_1 sip pkgs/main/linux-64::sip-6.7.12-py312h6a678d5_1 six pkgs/main/linux-64::six-1.17.0-py312h06a4308_0 sniffio pkgs/main/linux-64::sniffio-1.3.0-py312h06a4308_0 soupsieve pkgs/main/linux-64::soupsieve-2.5-py312h06a4308_0 stack_data pkgs/main/noarch::stack_data-0.2.0-pyhd3eb1b0_0 terminado pkgs/main/linux-64::terminado-0.17.1-py312h06a4308_0 tinycss2 pkgs/main/linux-64::tinycss2-1.4.0-py312h06a4308_0 tornado pkgs/main/linux-64::tornado-6.5.1-py312h5eee18b_0 traitlets pkgs/main/linux-64::traitlets-5.14.3-py312h06a4308_0 typing-extensions pkgs/main/linux-64::typing-extensions-4.12.2-py312h06a4308_0 typing_extensions pkgs/main/linux-64::typing_extensions-4.12.2-py312h06a4308_0 wcwidth pkgs/main/linux-64::wcwidth-0.2.13-py312h06a4308_0 webencodings pkgs/main/linux-64::webencodings-0.5.1-py312h06a4308_2 websocket-client pkgs/main/linux-64::websocket-client-1.8.0-py312h06a4308_0 widgetsnbextension pkgs/main/linux-64::widgetsnbextension-4.0.13-py312h06a4308_0 xcb-util pkgs/main/linux-64::xcb-util-0.4.1-h5eee18b_2 xcb-util-image pkgs/main/linux-64::xcb-util-image-0.4.0-h5eee18b_2 xcb-util-keysyms pkgs/main/linux-64::xcb-util-keysyms-0.4.1-h5eee18b_0 xcb-util-renderut~ pkgs/main/linux-64::xcb-util-renderutil-0.3.10-h5eee18b_0 xcb-util-wm pkgs/main/linux-64::xcb-util-wm-0.4.2-h5eee18b_0 xkeyboard-config pkgs/main/linux-64::xkeyboard-config-2.44-h5eee18b_0 xorg-libxdamage pkgs/main/linux-64::xorg-libxdamage-1.1.6-h9b100fa_0 xorg-libxfixes pkgs/main/linux-64::xorg-libxfixes-6.0.1-h9b100fa_0 xorg-libxshmfence pkgs/main/linux-64::xorg-libxshmfence-1.3.3-h9b100fa_0 xorg-libxxf86vm pkgs/main/linux-64::xorg-libxxf86vm-1.1.6-h9b100fa_0 yaml pkgs/main/linux-64::yaml-0.2.5-h7b6447c_0 zeromq pkgs/main/linux-64::zeromq-4.3.5-h6a678d5_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [ Info: Running nbconvert ... [NbConvertApp] WARNING | pattern '' matched no files [NbConvertApp] Converting notebook /home/pkgeval/.julia/packages/RCall/GLHIY/test/ijulia.ipynb to notebook Precompiling packages... [NbConvertApp] ERROR | Error occurred while starting new kernel client for kernel d55d0c73-38c7-4242-83c1-8c24197086bc: Kernel didn't respond in 60 seconds Info Given IJulia was explicitly requested, output will be shown live   [2155] signal 2: Interrupt in expression starting at /home/pkgeval/.julia/packages/IJulia/eenvU/src/IJulia.jl:37 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) fatal: error thrown and no exception handler available. InterruptException() yieldto at ./task.jl:1080 yieldto at ./task.jl:1074 [inlined] wait at ./task.jl:1190 task_done_hook at ./task.jl:839 jfptr_task_done_hook_73233.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] jl_finish_task at /source/src/task.c:349 start_task at /source/src/task.c:1264 Traceback (most recent call last): File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/jupyter_core/utils/__init__.py", line 154, in wrapped asyncio.get_running_loop() RuntimeError: no running event loop During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/pkgeval/.julia/conda/3/x86_64/bin/jupyter-nbconvert", line 11, in sys.exit(main()) ^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/jupyter_core/application.py", line 284, in launch_instance super().launch_instance(argv=argv, **kwargs) File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/traitlets/config/application.py", line 1075, in launch_instance app.start() File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/nbconvertapp.py", line 420, in start self.convert_notebooks() File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/nbconvertapp.py", line 597, in convert_notebooks self.convert_single_notebook(notebook_filename) File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/nbconvertapp.py", line 563, in convert_single_notebook output, resources = self.export_single_notebook( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/nbconvertapp.py", line 487, in export_single_notebook output, resources = self.exporter.from_filename( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/exporters/exporter.py", line 201, in from_filename return self.from_file(f, resources=resources, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/exporters/exporter.py", line 220, in from_file return self.from_notebook_node( ^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/exporters/notebook.py", line 36, in from_notebook_node nb_copy, resources = super().from_notebook_node(nb, resources, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/exporters/exporter.py", line 154, in from_notebook_node nb_copy, resources = self._preprocess(nb_copy, resources) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/exporters/exporter.py", line 353, in _preprocess nbc, resc = preprocessor(nbc, resc) ^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/preprocessors/base.py", line 48, in __call__ return self.preprocess(nb, resources) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/preprocessors/execute.py", line 97, in preprocess with self.setup_kernel(): ^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/contextlib.py", line 137, in __enter__ return next(self.gen) ^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbclient/client.py", line 603, in setup_kernel self.start_new_kernel_client() File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/jupyter_core/utils/__init__.py", line 158, in wrapped return loop.run_until_complete(inner) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/asyncio/base_events.py", line 691, in run_until_complete return future.result() ^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbclient/client.py", line 566, in async_start_new_kernel_client await ensure_async(self.kc.wait_for_ready(timeout=self.startup_timeout)) File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/jupyter_core/utils/__init__.py", line 197, in ensure_async result = await obj ^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/jupyter_client/client.py", line 207, in _async_wait_for_ready raise RuntimeError("Kernel didn't respond in %d seconds" % timeout) RuntimeError: Kernel didn't respond in 60 seconds ===================================================== IJulia: Error During Test at /home/pkgeval/.julia/packages/RCall/GLHIY/test/runtests.jl:80 Got exception outside of a @test LoadError: failed process: Process(`/home/pkgeval/.julia/conda/3/x86_64/bin/jupyter nbconvert --ExecutePreprocessor.timeout=-1 --to notebook --execute /home/pkgeval/.julia/packages/RCall/GLHIY/test/ijulia.ipynb '' --output /home/pkgeval/.julia/packages/RCall/GLHIY/test/ijulia.ipynb`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] read(cmd::Cmd) @ Base ./process.jl:482 [3] read @ ./process.jl:491 [inlined] [4] notebook(source::String; out_path::String, timeout::Int64, nbconvert_options::String, jupyter_path::String) @ Weave ~/.julia/packages/Weave/f7Ly3/src/Weave.jl:296 [5] kwcall(::@NamedTuple{out_path::String, jupyter_path::String}, ::typeof(Weave.notebook), source::String) @ Weave ~/.julia/packages/Weave/f7Ly3/src/Weave.jl:281 [6] top-level scope @ ~/.julia/packages/RCall/GLHIY/test/ijulia.jl:14 [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [8] macro expansion @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:81 [inlined] [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [10] macro expansion @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:81 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [12] top-level scope @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:48 [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [14] top-level scope @ none:6 [15] eval(m::Module, e::Any) @ Core ./boot.jl:489 [16] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [17] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/RCall/GLHIY/test/ijulia.jl:14 ===================================================== ┌ Info: └ RCall.conda_provided_r = true . Test Summary: | Pass Error Total Time RCall | 459 3 462 3m36.1s basic | 64 64 19.8s convert/base | 192 192 15.2s convert/missing | 28 28 2.1s convert/datetime | 86 86 6.2s convert/dataframe | 11 11 5.8s convert/categorical | 22 22 3.6s convert/formula | 16 16 9.6s convert/namedtuple | 10 10 1.7s convert/tuple | 11 11 0.4s macros | 17 17 1.1s namespaces | 1 1 4.1s repl | 1 1 7.4s IJulia | 1 1 2m18.5s ERROR: LoadError: Some tests did not pass: 459 passed, 0 failed, 3 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/RCall/GLHIY/test/runtests.jl:45 Testing failed after 189.42s ERROR: LoadError: Package RCall errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2695 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2544 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:311 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [14] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 961.78s: package tests unexpectedly errored