Package evaluation of PlantBiophysics on Julia 1.13.0-DEV.971 (04e26c5eae*) started at 2025-08-11T00:35:15.732 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.85s ################################################################################ # Installation # Installing PlantBiophysics... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [7ae8fcfa] + PlantBiophysics v0.16.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.16.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.19.0 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [d1d4a3ce] + BitFlags v0.1.9 [336ed68f] + CSV v0.10.15 ⌅ [da1fd8a2] + CodeTracking v1.3.9 [6309b1aa] + CodecInflate64 v0.1.3 [944b1d66] + CodecZlib v0.7.8 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.4 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [8f5d6c58] + EzXML v1.2.2 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [5789e2e9] + FileIO v1.17.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [f6369f11] + ForwardDiff v1.0.1 [86223c79] + Graphs v1.13.0 [cd3eb016] + HTTP v1.10.17 [076d061b] + HashArrayMappedTries v0.2.0 [eafb193a] + Highlights v0.5.3 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.4 [0c81fc1b] + InputBuffers v1.1.1 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [b14d175d] + JuliaVariables v0.2.4 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [2fda8390] + LsqFit v0.15.1 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.9 [fa8bd995] + MetaGraphsNext v0.7.3 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [dd4a991b] + MultiScaleTreeGraph v0.14.4 [af6c499f] + MutableNamedTuples v0.1.3 [1c23619d] + MyterialColors v0.3.0 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [71a1bf82] + NameResolution v0.1.5 [4d8831e6] + OpenSSL v1.5.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [7ae8fcfa] + PlantBiophysics v0.16.0 [4630fe09] + PlantMeteo v0.6.1 [9a576370] + PlantSimEngine v0.13.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [8162dcfd] + PrettyPrint v0.2.0 [08abe8d2] + PrettyTables v2.4.0 [33c8b6b6] + ProgressLogging v0.1.5 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [7e506255] + ScopedValues v1.4.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [22787eb5] + Term v2.0.7 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.84 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1cfade01] + UnicodeFun v0.4.1 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [fdbf4ff8] + XLSX v0.10.4 [ddb6d928] + YAML v0.4.14 [49080126] + ZipArchives v2.5.1 [a5390f91] + ZipFile v0.10.1 [94ce4f54] + Libiconv_jll v1.18.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.6+2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [02c8fc9c] + XML2_jll v2.14.4+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.12s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 1620.47s ################################################################################ # Testing # Testing PlantBiophysics Status `/tmp/jl_gQoi7G/Project.toml` [4c88cf16] Aqua v0.8.14 [336ed68f] CSV v0.10.15 [13f3f980] CairoMakie v0.15.5 [a93c6f00] DataFrames v1.7.0 [e30172f5] Documenter v1.14.1 [0987c9cc] MonteCarloMeasurements v1.5.1 [dd4a991b] MultiScaleTreeGraph v0.14.4 [bac558e1] OrderedCollections v1.8.1 [7ae8fcfa] PlantBiophysics v0.16.0 [5edaa67e] PlantGeom v0.13.0 [91a5bcdd] Plots v1.40.18 [bd369af6] Tables v1.12.1 [ade2ca70] Dates v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_gQoi7G/Manifest.toml` [47edcb42] ADTypes v1.16.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [4c88cf16] Aqua v0.8.14 [dce04be8] ArgCheck v2.5.0 [ec485272] 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[f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 86747.5 ms ✓ PlantBiophysics 1 dependency successfully precompiled in 96 seconds. 208 already precompiled. Precompiling packages... 5738.2 ms ✓ ArrayInterface → ArrayInterfaceChainRulesExt 2062.3 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1809.9 ms ✓ TiledIteration 9846.7 ms ✓ Sixel 6515.3 ms ✓ OpenEXR 53239.7 ms ✓ TiffImages 6224.2 ms ✓ ImageAxes 9341.6 ms ✓ WebP 18196.5 ms ✓ Meshes 4442.5 ms ✓ ImageMetadata 8600.9 ms ✓ Netpbm 84074.2 ms ✓ Meshes → MeshesMakieExt Info Given PlantGeom was explicitly requested, output will be shown live  ┌ Warning: Replacing docs for `PlantGeom.plantviz :: Union{}` in module `PlantGeom` └ @ Base.Docs docs/Docs.jl:253 ┌ Warning: Replacing docs for `PlantGeom.plantviz! :: Union{}` in module `PlantGeom` └ @ Base.Docs docs/Docs.jl:253 125349.3 ms ✓ PlantGeom 13 dependencies successfully precompiled in 345 seconds. 332 already precompiled. 1 dependency had output during precompilation: ┌ PlantGeom │ [Output was shown above] └ Precompiling packages... 1151.8 ms ✓ Accessors → StructArraysExt 1 dependency successfully precompiled in 1 seconds. 20 already precompiled. Precompiling packages... 1868.0 ms ✓ BangBang → BangBangStructArraysExt 1 dependency successfully precompiled in 2 seconds. 24 already precompiled. Precompiling packages... 6001.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceZygoteExt 1 dependency successfully precompiled in 7 seconds. 74 already precompiled. Precompiling packages... 13359.9 ms ✓ MonteCarloMeasurements 1 dependency successfully precompiled in 16 seconds. 74 already precompiled. Precompiling packages... 10329.2 ms ✓ PlotThemes 9231.4 ms ✓ RecipesPipeline 10282.6 ms ✓ MonteCarloMeasurements → RecipesBaseExt 8986.4 ms ✓ MonteCarloMeasurements → UnitfulExt 106022.0 ms ✓ Plots 19982.8 ms ✓ Plots → UnitfulExt 6 dependencies successfully precompiled in 169 seconds. 234 already precompiled. Precompiling packages... 11588.2 ms ✓ MonteCarloMeasurements → ForwardDiffExt 1 dependency successfully precompiled in 15 seconds. 85 already precompiled. Precompiling packages... 71755.6 ms ✓ MonteCarloMeasurements → MakieExt 1 dependency successfully precompiled in 77 seconds. 287 already precompiled. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 189 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm9MemorySSA15createNewAccessINS_14BatchAAResultsEEEPNS_14MemoryUseOrDefEPNS_11InstructionEPT_PKS3_.constprop.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm9MemorySSA14buildMemorySSAINS_14iterator_rangeINS_14ilist_iteratorINS_12ilist_detail12node_optionsINS_10BasicBlockELb1ELb0EvLb0EvEELb0ELb0EEEEEEEvRNS_14BatchAAResultsET_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm9MemorySSAC1ERNS_8FunctionEPNS_9AAResultsEPNS_13DominatorTreeE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm17MemorySSAAnalysis3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6detail17AnalysisPassModelINS_8FunctionENS_17MemorySSAAnalysisENS_15AnalysisManagerIS2_JEE11InvalidatorEJEE3runERS2_RS5_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15AnalysisManagerINS_8FunctionEJEE13getResultImplEPNS_11AnalysisKeyERS1_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm25FunctionToLoopPassAdaptor3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:791 operator() at /source/src/jitlayers.cpp:1510 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1471 [inlined] operator() at /source/src/jitlayers.cpp:1623 [inlined] addModule at /source/src/jitlayers.cpp:2080 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:873 jl_compile_method_internal at /source/src/gf.c:3527 _jl_invoke at /source/src/gf.c:4007 [inlined] ijl_apply_generic at /source/src/gf.c:4212 #develop#180 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:1969 develop at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:1958 [inlined] #develop#141 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:296 develop at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:249 _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 #develop#12 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 develop at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [inlined] #develop#9 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [inlined] develop at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [inlined] precompile_wrapper at /home/pkgeval/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:93 #has_persistent_tasks#58 at /home/pkgeval/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:49 has_persistent_tasks at /home/pkgeval/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:46 unknown function (ip: 0x7e399f92bd5a) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] jl_f__apply_iterate at /source/src/builtins.c:864 eval_test_function at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:388 macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] #test_persistent_tasks#56 at /home/pkgeval/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:38 test_persistent_tasks at /home/pkgeval/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:34 [inlined] #test_persistent_tasks#57 at /home/pkgeval/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:43 [inlined] test_persistent_tasks at /home/pkgeval/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:42 [inlined] macro expansion at /home/pkgeval/.julia/packages/Aqua/MCcFg/src/Aqua.jl:109 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] #test_all#72 at /home/pkgeval/.julia/packages/Aqua/MCcFg/src/Aqua.jl:109 test_all at /home/pkgeval/.julia/packages/Aqua/MCcFg/src/Aqua.jl:59 unknown function (ip: 0x7e39b42dcb36) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2847 _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 _include at ./loading.jl:2907 include at ./Base.jl:312 IncludeInto at ./Base.jl:313 jfptr_IncludeInto_36308.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 exec_options at ./client.jl:286 _start at ./client.jl:553 jfptr__start_70166.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7e39b5640249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_30142.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000785c0b2760e0 Total snapshots: 428. Utilization: 0% ╎428 @Base/task.jl:1129 wait_forever() 427╎ 428 @Base/task.jl:1192 wait() ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007e399b400010 Total snapshots: 1. Utilization: 100% ╎1 @Base/client.jl:553 _start() ╎ 1 @Base/client.jl:286 exec_options(opts::Base.JLOptions) ╎ 1 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ 1 @Base/Base.jl:313 (::Base.IncludeInto)(fname::String) ╎ 1 @Base/Base.jl:312 include(mapexpr::Function, mod::Module, _path::Strin… ╎ 1 @Base/loading.jl:2907 _include(mapexpr::Function, mod::Module, _path:… ╎ ╎ 1 @Base/loading.jl:2847 include_string(mapexpr::typeof(identity), mod:… ╎ ╎ 1 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 1 @Aqua/src/Aqua.jl:59 kwcall(::@NamedTuple{ambiguities::Bool}, ::ty… ╎ ╎ 1 @Aqua/src/Aqua.jl:109 test_all(testtarget::Module; ambiguities::B… ╎ ╎ 1 @Test/src/Test.jl:1929 macro expansion ╎ ╎ ╎ 1 @Aqua/src/Aqua.jl:109 macro expansion ╎ ╎ ╎ 1 @Aqua/…tent_tasks.jl:42 test_persistent_tasks ╎ ╎ ╎ 1 @Aqua/…tent_tasks.jl:43 #test_persistent_tasks#57 ╎ ╎ ╎ 1 @Aqua/…tent_tasks.jl:34 test_persistent_tasks ╎ ╎ ╎ 1 @Aqua/…ent_tasks.jl:38 test_persistent_tasks(package::Base.… ╎ ╎ ╎ ╎ 1 @Test/src/Test.jl:742 macro expansion ╎ ╎ ╎ ╎ 1 @Test/src/Test.jl:388 eval_test_function(func::Any, args:… ╎ ╎ ╎ ╎ 1 @Aqua/…nt_tasks.jl:46 has_persistent_tasks(package::Base… ╎ ╎ ╎ ╎ 1 @Aqua/…nt_tasks.jl:49 has_persistent_tasks(package::Bas… ╎ ╎ ╎ ╎ 1 @Aqua/…t_tasks.jl:93 precompile_wrapper(project::Strin… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/src/API.jl:155 develop ╎ ╎ ╎ ╎ ╎ 1 @Pkg/src/API.jl:155 #develop#9 ╎ ╎ ╎ ╎ ╎ 1 @Pkg/src/API.jl:157 develop ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…rc/API.jl:168 develop(pkgs::Vector{Pkg.Types… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…rc/API.jl:249 kwcall(::@NamedTuple{io::Base… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…c/API.jl:296 develop(ctx::Pkg.Types.Contex… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…tions.jl:1958 develop ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…ions.jl:1969 develop(ctx::Pkg.Types.Cont… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_30142.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 23645351 (Pool: 23644713; Big: 638); GC: 24 [189] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/PlantBiophysics/An4NW/test/runtests.jl:16 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_30142.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 112622073 (Pool: 112619910; Big: 2163); GC: 113 [321] signal 15: Terminated in expression starting at none:1 _ZN12_GLOBAL__N_18Verifier16visitInstructionERN4llvm11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_18Verifier6verifyERKN4llvm8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm14verifyFunctionERKNS_8FunctionEPNS_11raw_ostreamE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) verifyLLVMIR at /source/src/pipeline.cpp:898 runOnLoop at /source/src/llvm-julia-licm.cpp:356 run at /source/src/llvm-julia-licm.cpp:381 run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE13runSinglePassIS1_St10unique_ptrINS_6detail11PassConceptIS1_S5_JS4_S7_EEESt14default_deleteISD_EEEESt8optionalINS_17PreservedAnalysesEERT_RT0_RS5_S4_S7_RNS_19PassInstrumentationE.isra.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE24runWithoutLoopNestPassesERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE3runERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm25FunctionToLoopPassAdaptor3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:791 operator() at /source/src/jitlayers.cpp:1510 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1471 [inlined] operator() at /source/src/jitlayers.cpp:1623 [inlined] addModule at /source/src/jitlayers.cpp:2080 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:873 jl_compile_method_internal at /source/src/gf.c:3527 _jl_invoke at /source/src/gf.c:4007 [inlined] ijl_apply_generic at /source/src/gf.c:4212 #precompile#132 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 precompile at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [inlined] #precompile#134 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:185 precompile at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:174 unknown function (ip: 0x77bfced00b9f) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 exec_options at ./client.jl:286 _start at ./client.jl:553 jfptr__start_70166.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x77bfe482f249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 721074 (Pool: 721009; Big: 65); GC: 1 PkgEval terminated after 2736.36s: test duration exceeded the time limit