Package evaluation of Mice on Julia 1.13.0-DEV.971 (04e26c5eae*) started at 2025-08-10T17:33:00.431


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.37s


################################################################################
# Installation
#

Installing Mice...
   Resolving package versions...
    Updating `~/.julia/environments/v1.13/Project.toml`
  [d4678d24] + Mice v0.3.8
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [39de3d68] + AxisArrays v0.4.7
⌅ [324d7699] + CategoricalArrays v0.10.8
  [34da2185] + Compat v4.18.0
  [9a962f9c] + DataAPI v1.16.0
⌅ [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [31c24e10] + Distributions v0.25.120
  [ffbed154] + DocStringExtensions v0.9.5
  [1a297f60] + FillArrays v1.13.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [8197267c] + IntervalSets v0.7.11
  [92d709cd] + IrrationalConstants v0.2.4
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [d4678d24] + Mice v0.3.8
  [e1d29d7a] + Missings v1.2.0
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.35
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [b3c3ace0] + RangeArrays v0.3.2
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.8.0
  [1277b4bf] + ShiftedArrays v2.0.0
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.5.1
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
  [2913bbd2] + StatsBase v0.34.6
  [4c63d2b9] + StatsFuns v1.5.0
  [3eaba693] + StatsModels v0.7.5
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [d6f4376e] + Markdown v1.11.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.5+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [8e850b90] + libblastrampoline_jll v5.13.1+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 4.72s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
ERROR: LoadError: The following 2 direct dependencies failed to precompile:

BetaML 

Failed to precompile BetaML [024491cd-cc6b-443e-8034-08ea7eb7db2b] to "/home/pkgeval/.julia/compiled/v1.13/BetaML/jl_Z3YDHe" (ProcessExited(1)).
WARNING: Constructor for type "Int16" was extended in `VectorizationBase` without explicit qualification or import.
  NOTE: Assumed "Int16" refers to `Base.Int16`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Int16 end`.
  Hint: To silence the warning, qualify `Int16` as `Base.Int16` in the method signature or explicitly `import Base: Int16`.
WARNING: Constructor for type "Int64" was extended in `VectorizationBase` without explicit qualification or import.
  NOTE: Assumed "Int64" refers to `Base.Int64`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Int64 end`.
  Hint: To silence the warning, qualify `Int64` as `Base.Int64` in the method signature or explicitly `import Base: Int64`.
WARNING: Constructor for type "Int32" was extended in `VectorizationBase` without explicit qualification or import.
  NOTE: Assumed "Int32" refers to `Base.Int32`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Int32 end`.
  Hint: To silence the warning, qualify `Int32` as `Base.Int32` in the method signature or explicitly `import Base: Int32`.
WARNING: Constructor for type "UInt8" was extended in `VectorizationBase` without explicit qualification or import.
  NOTE: Assumed "UInt8" refers to `Base.UInt8`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function UInt8 end`.
  Hint: To silence the warning, qualify `UInt8` as `Base.UInt8` in the method signature or explicitly `import Base: UInt8`.
WARNING: Constructor for type "UInt16" was extended in `VectorizationBase` without explicit qualification or import.
  NOTE: Assumed "UInt16" refers to `Base.UInt16`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function UInt16 end`.
  Hint: To silence the warning, qualify `UInt16` as `Base.UInt16` in the method signature or explicitly `import Base: UInt16`.
WARNING: Constructor for type "Float32" was extended in `VectorizationBase` without explicit qualification or import.
  NOTE: Assumed "Float32" refers to `Base.Float32`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Float32 end`.
  Hint: To silence the warning, qualify `Float32` as `Base.Float32` in the method signature or explicitly `import Base: Float32`.
WARNING: Constructor for type "UInt64" was extended in `VectorizationBase` without explicit qualification or import.
  NOTE: Assumed "UInt64" refers to `Base.UInt64`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function UInt64 end`.
  Hint: To silence the warning, qualify `UInt64` as `Base.UInt64` in the method signature or explicitly `import Base: UInt64`.
WARNING: Constructor for type "Bool" was extended in `VectorizationBase` without explicit qualification or import.
  NOTE: Assumed "Bool" refers to `Base.Bool`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Bool end`.
  Hint: To silence the warning, qualify `Bool` as `Base.Bool` in the method signature or explicitly `import Base: Bool`.
WARNING: Constructor for type "Int8" was extended in `VectorizationBase` without explicit qualification or import.
  NOTE: Assumed "Int8" refers to `Base.Int8`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Int8 end`.
  Hint: To silence the warning, qualify `Int8` as `Base.Int8` in the method signature or explicitly `import Base: Int8`.
WARNING: Constructor for type "Float64" was extended in `VectorizationBase` without explicit qualification or import.
  NOTE: Assumed "Float64" refers to `Base.Float64`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Float64 end`.
  Hint: To silence the warning, qualify `Float64` as `Base.Float64` in the method signature or explicitly `import Base: Float64`.
WARNING: Constructor for type "UInt32" was extended in `VectorizationBase` without explicit qualification or import.
  NOTE: Assumed "UInt32" refers to `Base.UInt32`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function UInt32 end`.
  Hint: To silence the warning, qualify `UInt32` as `Base.UInt32` in the method signature or explicitly `import Base: UInt32`.
WARNING: Constructor for type "Float16" was extended in `VectorizationBase` without explicit qualification or import.
  NOTE: Assumed "Float16" refers to `Base.Float16`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Float16 end`.
  Hint: To silence the warning, qualify `Float16` as `Base.Float16` in the method signature or explicitly `import Base: Float16`.
[ Info: Beginning BetaML PrecompileTool workflow....
ERROR: LoadError: MethodError: objects of type Module are not callable.
In case you did not try calling it explicitly, check if a Module has been passed as an argument to a method that expects a callable instead.
The object of type `Module` exists, but no method is defined for this combination of argument types when trying to treat it as a callable object.
Stacktrace:
  [1] backward(layer::BetaML.Nn.VectorFunctionLayer{0, typeof(BetaML.Utils.softmax), typeof(BetaML.Utils.dsoftmax), Nothing, Float64}, x::Vector{Float64}, next_gradient::Vector{Float64})
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/default_layers/VectorFunctionLayer.jl:102
  [2] get_gradient(nn::BetaML.Nn.NN, x::Vector{Float64}, y::Vector{Bool})
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:493
  [3] get_batchgradient(nn::BetaML.Nn.NN, xbatch::Matrix{Float64}, ybatch::Matrix{Bool})
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:530
  [4] macro expansion
    @ ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:718 [inlined]
  [5] macro expansion
    @ ~/.julia/packages/ProgressMeter/kniaW/src/ProgressMeter.jl:1021 [inlined]
  [6] train!(nn::BetaML.Nn.NN, x::Matrix{Float64}, y::Matrix{Bool}; epochs::Int64, batch_size::Int64, sequential::Bool, nepochs_ran::Int64, verbosity::BetaML.Api.Verbosity, cb::typeof(BetaML.Nn.fitting_info), onfail::String, fail_epoch::Int64, fail_threshold::Float64, opt_alg::BetaML.Nn.ADAM, rng::Random.TaskLocalRNG)
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:703
  [7] kwcall(::@NamedTuple{epochs::Int64, batch_size::Int64, sequential::Bool, verbosity::BetaML.Api.Verbosity, cb::typeof(BetaML.Nn.fitting_info), opt_alg::BetaML.Nn.ADAM, nepochs_ran::Int64, onfail::String, fail_epoch::Int64, fail_threshold::Float64, rng::Random.TaskLocalRNG}, ::typeof(BetaML.Nn.train!), nn::BetaML.Nn.NN, x::Matrix{Float64}, y::Matrix{Bool})
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:665
  [8] fit!(m::BetaML.Nn.NeuralNetworkEstimator, X::Matrix{Float64}, Y::Matrix{Bool})
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:1174
  [9] macro expansion
    @ ~/.julia/packages/BetaML/3Lb3h/src/Precompilation.jl:13 [inlined]
 [10] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]
 [11] macro expansion
    @ ~/.julia/packages/BetaML/3Lb3h/src/Precompilation.jl:7 [inlined]
 [12] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined]
 [13] top-level scope
    @ ~/.julia/packages/BetaML/3Lb3h/src/Precompilation.jl:118
 [14] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:312
 [15] top-level scope
    @ ~/.julia/packages/BetaML/3Lb3h/src/BetaML.jl:78
 [16] include(mod::Module, _path::String)
    @ Base ./Base.jl:311
 [17] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3001
 [18] top-level scope
    @ stdin:5
 [19] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [20] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2847
 [21] include_string
    @ ./loading.jl:2857 [inlined]
 [22] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:318
 [23] _start()
    @ Base ./client.jl:553
in expression starting at /home/pkgeval/.julia/packages/BetaML/3Lb3h/src/Precompilation.jl:1
in expression starting at /home/pkgeval/.julia/packages/BetaML/3Lb3h/src/BetaML.jl:1
in expression starting at stdin:5
MiceBetaMLExt 

Failed to precompile MiceBetaMLExt [288f723e-e29c-53da-a991-4a2421ba548b] to "/home/pkgeval/.julia/compiled/v1.13/MiceBetaMLExt/jl_iOTKBo" (ProcessExited(1)).
[ Info: Beginning BetaML PrecompileTool workflow....
ERROR: LoadError: MethodError: objects of type Module are not callable.
In case you did not try calling it explicitly, check if a Module has been passed as an argument to a method that expects a callable instead.
The object of type `Module` exists, but no method is defined for this combination of argument types when trying to treat it as a callable object.
Stacktrace:
  [1] backward(layer::BetaML.Nn.VectorFunctionLayer{0, typeof(BetaML.Utils.softmax), typeof(BetaML.Utils.dsoftmax), Nothing, Float64}, x::Vector{Float64}, next_gradient::Vector{Float64})
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/default_layers/VectorFunctionLayer.jl:102
  [2] get_gradient(nn::BetaML.Nn.NN, x::Vector{Float64}, y::Vector{Bool})
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:493
  [3] get_batchgradient(nn::BetaML.Nn.NN, xbatch::Matrix{Float64}, ybatch::Matrix{Bool})
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:530
  [4] macro expansion
    @ ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:718 [inlined]
  [5] macro expansion
    @ ~/.julia/packages/ProgressMeter/kniaW/src/ProgressMeter.jl:1021 [inlined]
  [6] train!(nn::BetaML.Nn.NN, x::Matrix{Float64}, y::Matrix{Bool}; epochs::Int64, batch_size::Int64, sequential::Bool, nepochs_ran::Int64, verbosity::BetaML.Api.Verbosity, cb::typeof(BetaML.Nn.fitting_info), onfail::String, fail_epoch::Int64, fail_threshold::Float64, opt_alg::BetaML.Nn.ADAM, rng::Random.TaskLocalRNG)
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:703
  [7] kwcall(::@NamedTuple{epochs::Int64, batch_size::Int64, sequential::Bool, verbosity::BetaML.Api.Verbosity, cb::typeof(BetaML.Nn.fitting_info), opt_alg::BetaML.Nn.ADAM, nepochs_ran::Int64, onfail::String, fail_epoch::Int64, fail_threshold::Float64, rng::Random.TaskLocalRNG}, ::typeof(BetaML.Nn.train!), nn::BetaML.Nn.NN, x::Matrix{Float64}, y::Matrix{Bool})
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:665
  [8] fit!(m::BetaML.Nn.NeuralNetworkEstimator, X::Matrix{Float64}, Y::Matrix{Bool})
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:1174
  [9] macro expansion
    @ ~/.julia/packages/BetaML/3Lb3h/src/Precompilation.jl:13 [inlined]
 [10] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]
 [11] macro expansion
    @ ~/.julia/packages/BetaML/3Lb3h/src/Precompilation.jl:7 [inlined]
 [12] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined]
 [13] top-level scope
    @ ~/.julia/packages/BetaML/3Lb3h/src/Precompilation.jl:118
 [14] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:312
 [15] top-level scope
    @ ~/.julia/packages/BetaML/3Lb3h/src/BetaML.jl:78
 [16] include(mod::Module, _path::String)
    @ Base ./Base.jl:311
 [17] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:3001
 [18] top-level scope
    @ stdin:5
 [19] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [20] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2847
 [21] include_string
    @ ./loading.jl:2857 [inlined]
 [22] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:318
 [23] _start()
    @ Base ./client.jl:553
in expression starting at /home/pkgeval/.julia/packages/BetaML/3Lb3h/src/Precompilation.jl:1
in expression starting at /home/pkgeval/.julia/packages/BetaML/3Lb3h/src/BetaML.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile BetaML [024491cd-cc6b-443e-8034-08ea7eb7db2b] to "/home/pkgeval/.julia/compiled/v1.13/BetaML/jl_24c6mh" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3288
  [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
    @ Base ./loading.jl:3166
  [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2653
  [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94
  [6] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined]
  [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115
  [8] #invokelatest_gr#235
    @ ./reflection.jl:1333 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1325 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3859
 [11] maybe_cachefile_lock
    @ ./loading.jl:3856 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2639
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2468
 [14] macro expansion
    @ ./loading.jl:2396 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2360
 [17] require
    @ ./loading.jl:2336 [inlined]
 [18] eval_import_path
    @ ./module.jl:36 [inlined]
 [19] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [20] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})
    @ Base ./module.jl:101
 [21] top-level scope
    @ ~/.julia/packages/Mice/FRsUZ/ext/MiceBetaMLExt.jl:2
 [22] include(mod::Module, _path::String)
    @ Base ./Base.jl:311
 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3001
 [24] top-level scope
    @ stdin:5
 [25] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2847
 [27] include_string
    @ ./loading.jl:2857 [inlined]
 [28] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:318
 [29] _start()
    @ Base ./client.jl:553
in expression starting at /home/pkgeval/.julia/packages/Mice/FRsUZ/ext/MiceBetaMLExt.jl:1
in expression starting at stdin:5
in expression starting at /PkgEval.jl/scripts/precompile.jl:37

Precompilation failed after 576.75s



################################################################################
# Testing
#

     Testing Mice
      Status `/tmp/jl_AaP5Dh/Project.toml`
  [024491cd] BetaML v0.12.2
  [336ed68f] CSV v0.10.15
⌅ [324d7699] CategoricalArrays v0.10.8
  [a93c6f00] DataFrames v1.7.0
  [38e38edf] GLM v1.9.0
  [d4678d24] Mice v0.3.8
  [bd369af6] Tables v1.12.1
  [9d95f2ec] TypedTables v1.4.6
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_AaP5Dh/Manifest.toml`
  [621f4979] AbstractFFTs v1.5.0
  [1520ce14] AbstractTrees v0.4.5
  [79e6a3ab] Adapt v4.3.0
  [66dad0bd] AliasTables v1.1.3
  [4fba245c] ArrayInterface v7.19.0
  [39de3d68] AxisArrays v0.4.7
  [024491cd] BetaML v0.12.2
  [62783981] BitTwiddlingConvenienceFunctions v0.1.6
  [2a0fbf3d] CPUSummary v0.2.7
  [336ed68f] CSV v0.10.15
⌅ [324d7699] CategoricalArrays v0.10.8
  [082447d4] ChainRules v1.72.5
  [d360d2e6] ChainRulesCore v1.26.0
  [fb6a15b2] CloseOpenIntervals v0.1.13
  [944b1d66] CodecZlib v0.7.8
  [861a8166] Combinatorics v1.0.3
  [bbf7d656] CommonSubexpressions v0.3.1
  [f70d9fcc] CommonWorldInvalidations v1.0.0
  [34da2185] Compat v4.18.0
  [187b0558] ConstructionBase v1.6.0
  [adafc99b] CpuId v0.3.1
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.7.0
⌅ [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [8bb1440f] DelimitedFiles v1.9.1
  [85a47980] Dictionaries v0.4.5
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [31c24e10] Distributions v0.25.120
  [ffbed154] DocStringExtensions v0.9.5
  [5789e2e9] FileIO v1.17.0
  [48062228] FilePathsBase v0.9.24
  [1a297f60] FillArrays v1.13.0
  [9dda63f9] ForceImport v0.0.3
  [f6369f11] ForwardDiff v1.0.1
  [38e38edf] GLM v1.9.0
  [46192b85] GPUArraysCore v0.2.0
  [076d061b] HashArrayMappedTries v0.2.0
  [3e5b6fbb] HostCPUFeatures v0.1.17
  [34004b35] HypergeometricFunctions v0.3.28
  [7869d1d1] IRTools v0.4.15
  [615f187c] IfElse v0.1.1
  [313cdc1a] Indexing v1.1.1
  [842dd82b] InlineStrings v1.4.4
  [8197267c] IntervalSets v0.7.11
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.4
  [c8e1da08] IterTools v1.10.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [033835bb] JLD2 v0.5.15
  [692b3bcd] JLLWrappers v1.7.1
  [b964fa9f] LaTeXStrings v1.4.0
  [10f19ff3] LayoutPointers v0.1.17
  [2ab3a3ac] LogExpFunctions v0.3.29
  [bdcacae8] LoopVectorization v0.12.172
  [e80e1ace] MLJModelInterface v1.12.0
  [1914dd2f] MacroTools v0.5.16
  [d125e4d3] ManualMemory v0.1.8
  [d4678d24] Mice v0.3.8
  [e1d29d7a] Missings v1.2.0
  [77ba4419] NaNMath v1.1.3
  [6fe1bfb0] OffsetArrays v1.17.0
  [bac558e1] OrderedCollections v1.8.1
  [90014a1f] PDMats v0.11.35
  [69de0a69] Parsers v2.8.3
  [1d0040c9] PolyesterWeave v0.2.2
  [2dfb63ee] PooledArrays v1.4.3
  [aea7be01] PrecompileTools v1.3.2
  [21216c6a] Preferences v1.4.3
  [08abe8d2] PrettyTables v2.4.0
  [92933f4c] ProgressMeter v1.10.4
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [b3c3ace0] RangeArrays v0.3.2
  [c1ae055f] RealDot v0.1.0
  [3cdcf5f2] RecipesBase v1.3.4
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [79098fc4] Rmath v0.8.0
  [94e857df] SIMDTypes v0.1.0
  [476501e8] SLEEFPirates v0.6.43
  [30f210dd] ScientificTypesBase v3.0.0
  [7e506255] ScopedValues v1.4.0
  [91c51154] SentinelArrays v1.4.8
  [1277b4bf] ShiftedArrays v2.0.0
  [a2af1166] SortingAlgorithms v1.2.2
  [dc90abb0] SparseInverseSubset v0.1.2
  [276daf66] SpecialFunctions v2.5.1
  [03a91e81] SplitApplyCombine v1.2.3
  [860ef19b] StableRNGs v1.0.3
  [aedffcd0] Static v1.2.0
  [0d7ed370] StaticArrayInterface v1.8.0
  [90137ffa] StaticArrays v1.9.14
  [1e83bf80] StaticArraysCore v1.4.3
  [64bff920] StatisticalTraits v3.5.0
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.1
  [2913bbd2] StatsBase v0.34.6
  [4c63d2b9] StatsFuns v1.5.0
  [3eaba693] StatsModels v0.7.5
  [892a3eda] StringManipulation v0.4.1
  [09ab397b] StructArrays v0.7.1
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [8290d209] ThreadingUtilities v0.5.5
  [3bb67fe8] TranscodingStreams v0.11.3
  [9d95f2ec] TypedTables v1.4.6
  [3a884ed6] UnPack v1.0.2
  [3d5dd08c] VectorizationBase v0.21.71
  [ea10d353] WeakRefStrings v1.4.2
  [76eceee3] WorkerUtilities v1.6.1
  [e88e6eb3] Zygote v0.7.10
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  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
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  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.13.0
  [de0858da] Printf v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
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  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.15.0+1
  [e37daf67] LibGit2_jll v1.9.1+0
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  [14a3606d] MozillaCACerts_jll v2025.7.15
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.5+0
  [458c3c95] OpenSSL_jll v3.5.1+0
  [efcefdf7] PCRE2_jll v10.45.0+0
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  [83775a58] Zlib_jll v1.3.1+2
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.13.1+0
  [8e850ede] nghttp2_jll v1.65.0+0
  [3f19e933] p7zip_jll v17.5.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
Precompiling packages...
Info Given BetaML was explicitly requested, output will be shown live 
[ Info: Beginning BetaML PrecompileTool workflow....
ERROR: LoadError: MethodError: objects of type Module are not callable.
In case you did not try calling it explicitly, check if a Module has been passed as an argument to a method that expects a callable instead.
The object of type `Module` exists, but no method is defined for this combination of argument types when trying to treat it as a callable object.
Stacktrace:
  [1] backward(layer::BetaML.Nn.VectorFunctionLayer{0, typeof(BetaML.Utils.softmax), typeof(BetaML.Utils.dsoftmax), Nothing, Float64}, x::Vector{Float64}, next_gradient::Vector{Float64})
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/default_layers/VectorFunctionLayer.jl:102
  [2] get_gradient(nn::BetaML.Nn.NN, x::Vector{Float64}, y::Vector{Bool})
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:493
  [3] get_batchgradient(nn::BetaML.Nn.NN, xbatch::Matrix{Float64}, ybatch::Matrix{Bool})
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:530
  [4] macro expansion
    @ ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:718 [inlined]
  [5] macro expansion
    @ ~/.julia/packages/ProgressMeter/kniaW/src/ProgressMeter.jl:1021 [inlined]
  [6] train!(nn::BetaML.Nn.NN, x::Matrix{Float64}, y::Matrix{Bool}; epochs::Int64, batch_size::Int64, sequential::Bool, nepochs_ran::Int64, verbosity::BetaML.Api.Verbosity, cb::typeof(BetaML.Nn.fitting_info), onfail::String, fail_epoch::Int64, fail_threshold::Float64, opt_alg::BetaML.Nn.ADAM, rng::Random.TaskLocalRNG)
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:703
  [7] kwcall(::@NamedTuple{epochs::Int64, batch_size::Int64, sequential::Bool, verbosity::BetaML.Api.Verbosity, cb::typeof(BetaML.Nn.fitting_info), opt_alg::BetaML.Nn.ADAM, nepochs_ran::Int64, onfail::String, fail_epoch::Int64, fail_threshold::Float64, rng::Random.TaskLocalRNG}, ::typeof(BetaML.Nn.train!), nn::BetaML.Nn.NN, x::Matrix{Float64}, y::Matrix{Bool})
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:665
  [8] fit!(m::BetaML.Nn.NeuralNetworkEstimator, X::Matrix{Float64}, Y::Matrix{Bool})
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:1174
  [9] macro expansion
    @ ~/.julia/packages/BetaML/3Lb3h/src/Precompilation.jl:13 [inlined]
 [10] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]
 [11] macro expansion
    @ ~/.julia/packages/BetaML/3Lb3h/src/Precompilation.jl:7 [inlined]
 [12] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined]
 [13] top-level scope
    @ ~/.julia/packages/BetaML/3Lb3h/src/Precompilation.jl:118
 [14] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:312
 [15] top-level scope
    @ ~/.julia/packages/BetaML/3Lb3h/src/BetaML.jl:78
 [16] include(mod::Module, _path::String)
    @ Base ./Base.jl:311
 [17] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3001
 [18] top-level scope
    @ stdin:5
 [19] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [20] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2847
 [21] include_string
    @ ./loading.jl:2857 [inlined]
 [22] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:318
 [23] _start()
    @ Base ./client.jl:553
in expression starting at /home/pkgeval/.julia/packages/BetaML/3Lb3h/src/Precompilation.jl:1
in expression starting at /home/pkgeval/.julia/packages/BetaML/3Lb3h/src/BetaML.jl:1
in expression starting at stdin:5
              ✗ BetaML
  0 dependencies successfully precompiled in 72 seconds. 162 already precompiled.

ERROR: LoadError: The following 1 direct dependency failed to precompile:

BetaML 

Failed to precompile BetaML [024491cd-cc6b-443e-8034-08ea7eb7db2b] to "/home/pkgeval/.julia/compiled/v1.13/BetaML/jl_8KU7oZ" (ProcessExited(1)).
[ Info: Beginning BetaML PrecompileTool workflow....
ERROR: LoadError: MethodError: objects of type Module are not callable.
In case you did not try calling it explicitly, check if a Module has been passed as an argument to a method that expects a callable instead.
The object of type `Module` exists, but no method is defined for this combination of argument types when trying to treat it as a callable object.
Stacktrace:
  [1] backward(layer::BetaML.Nn.VectorFunctionLayer{0, typeof(BetaML.Utils.softmax), typeof(BetaML.Utils.dsoftmax), Nothing, Float64}, x::Vector{Float64}, next_gradient::Vector{Float64})
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/default_layers/VectorFunctionLayer.jl:102
  [2] get_gradient(nn::BetaML.Nn.NN, x::Vector{Float64}, y::Vector{Bool})
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:493
  [3] get_batchgradient(nn::BetaML.Nn.NN, xbatch::Matrix{Float64}, ybatch::Matrix{Bool})
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:530
  [4] macro expansion
    @ ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:718 [inlined]
  [5] macro expansion
    @ ~/.julia/packages/ProgressMeter/kniaW/src/ProgressMeter.jl:1021 [inlined]
  [6] train!(nn::BetaML.Nn.NN, x::Matrix{Float64}, y::Matrix{Bool}; epochs::Int64, batch_size::Int64, sequential::Bool, nepochs_ran::Int64, verbosity::BetaML.Api.Verbosity, cb::typeof(BetaML.Nn.fitting_info), onfail::String, fail_epoch::Int64, fail_threshold::Float64, opt_alg::BetaML.Nn.ADAM, rng::Random.TaskLocalRNG)
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:703
  [7] kwcall(::@NamedTuple{epochs::Int64, batch_size::Int64, sequential::Bool, verbosity::BetaML.Api.Verbosity, cb::typeof(BetaML.Nn.fitting_info), opt_alg::BetaML.Nn.ADAM, nepochs_ran::Int64, onfail::String, fail_epoch::Int64, fail_threshold::Float64, rng::Random.TaskLocalRNG}, ::typeof(BetaML.Nn.train!), nn::BetaML.Nn.NN, x::Matrix{Float64}, y::Matrix{Bool})
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:665
  [8] fit!(m::BetaML.Nn.NeuralNetworkEstimator, X::Matrix{Float64}, Y::Matrix{Bool})
    @ BetaML.Nn ~/.julia/packages/BetaML/3Lb3h/src/Nn/Nn.jl:1174
  [9] macro expansion
    @ ~/.julia/packages/BetaML/3Lb3h/src/Precompilation.jl:13 [inlined]
 [10] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]
 [11] macro expansion
    @ ~/.julia/packages/BetaML/3Lb3h/src/Precompilation.jl:7 [inlined]
 [12] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined]
 [13] top-level scope
    @ ~/.julia/packages/BetaML/3Lb3h/src/Precompilation.jl:118
 [14] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:312
 [15] top-level scope
    @ ~/.julia/packages/BetaML/3Lb3h/src/BetaML.jl:78
 [16] include(mod::Module, _path::String)
    @ Base ./Base.jl:311
 [17] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3001
 [18] top-level scope
    @ stdin:5
 [19] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [20] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2847
 [21] include_string
    @ ./loading.jl:2857 [inlined]
 [22] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:318
 [23] _start()
    @ Base ./client.jl:553
in expression starting at /home/pkgeval/.julia/packages/BetaML/3Lb3h/src/Precompilation.jl:1
in expression starting at /home/pkgeval/.julia/packages/BetaML/3Lb3h/src/BetaML.jl:1
in expression starting at stdin:
in expression starting at /home/pkgeval/.julia/packages/Mice/FRsUZ/test/runtests.jl:1

Testing failed after 81.42s

ERROR: LoadError: Package Mice errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2695
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2544 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:311
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:320
 [14] _start()
    @ Base ./client.jl:553
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 699.56s: package fails to precompile