Package evaluation of DANDIArchive on Julia 1.13.0-DEV.971 (04e26c5eae*) started at 2025-08-10T14:43:52.630 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 7.45s ################################################################################ # Installation # Installing DANDIArchive... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [47d7f1a7] + DANDIArchive v0.51.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [992eb4ea] + CondaPkg v0.2.29 [47d7f1a7] + DANDIArchive v0.51.0 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [0f8b85d8] + JSON3 v1.14.3 [1914dd2f] + MacroTools v0.5.16 [0b3b1443] + MicroMamba v0.1.14 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [6099a3de] + PythonCall v0.9.26 [ae029012] + Requires v1.3.1 [6c6a2e73] + Scratch v1.3.0 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [e17b2a0c] + UnsafePointers v1.0.0 ⌅ [f8abcde7] + micromamba_jll v1.5.12+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 0.89s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 51.84s ################################################################################ # Testing # Testing DANDIArchive Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_kNgjc3/Project.toml` [47d7f1a7] + DANDIArchive v0.51.0 [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_kNgjc3/Manifest.toml` [992eb4ea] + CondaPkg v0.2.29 [47d7f1a7] + DANDIArchive v0.51.0 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [0f8b85d8] + JSON3 v1.14.3 [1914dd2f] + MacroTools v0.5.16 [0b3b1443] + MicroMamba v0.1.14 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [6099a3de] + PythonCall v0.9.26 [ae029012] + Requires v1.3.1 [6c6a2e73] + Scratch v1.3.0 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [e17b2a0c] + UnsafePointers v1.0.0 [c8ffd9c3] - MbedTLS_jll v2.28.0+0 ⌅ [f8abcde7] + micromamba_jll v1.5.12+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] ↑ LibCURL v0.6.3 ⇒ v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] ↑ LibCURL_jll v7.84.0+0 ⇒ v8.15.0+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] ↑ LibSSH2_jll v1.10.2+0 ⇒ v1.11.3+1 [14a3606d] ↑ MozillaCACerts_jll v2022.2.1 ⇒ v2025.7.15 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [83775a58] ↑ Zlib_jll v1.2.12+3 ⇒ v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] ↑ nghttp2_jll v1.48.0+0 ⇒ v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_kNgjc3/Project.toml` [47d7f1a7] DANDIArchive v0.51.0 [f43a241f] Downloads v1.7.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_kNgjc3/Manifest.toml` [992eb4ea] CondaPkg v0.2.29 [47d7f1a7] DANDIArchive v0.51.0 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [0f8b85d8] JSON3 v1.14.3 [1914dd2f] MacroTools v0.5.16 [0b3b1443] MicroMamba v0.1.14 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [6099a3de] PythonCall v0.9.26 [ae029012] Requires v1.3.1 [6c6a2e73] Scratch v1.3.0 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [e17b2a0c] UnsafePointers v1.0.0 ⌅ [f8abcde7] micromamba_jll v1.5.12+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... CondaPkg Found dependencies: /home/pkgeval/.julia/packages/DANDIArchive/B2vzr/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/avYrV/CondaPkg.toml CondaPkg Resolving changes + dandi + h5py + openssl + pynwb + python CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_kNgjc3/.CondaPkg ✔ Created /tmp/jl_kNgjc3/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_kNgjc3/.CondaPkg/pixi.toml │ [dependencies] │ openssl = ">=3, <3.6" │ pynwb = "*" │ dandi = "==0.51" │ h5py = "*" │ │ [dependencies.python] │ version = ">=3.8,<4" │ build = "*cpython*" │ channel = "conda-forge" │ │ [project] │ name = ".CondaPkg" │ description = "automatically generated by CondaPkg.jl" │ platforms = ["linux-64"] │ channel-priority = "strict" └ channels = ["conda-forge"] CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_kNgjc3/.CondaPkg/pixi.toml ✔ The default environment has been installed. ERROR: LoadError: InitError: Python: ImportError: cannot import name 'inspect_nwb' from 'nwbinspector' (/tmp/jl_kNgjc3/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/nwbinspector/__init__.py) Python stacktrace: [1] @ /tmp/jl_kNgjc3/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/dandi/files/bases.py:22 [2] @ /tmp/jl_kNgjc3/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/dandi/files/_private.py:17 [3] @ /tmp/jl_kNgjc3/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/dandi/files/__init__.py:23 [4] @ /tmp/jl_kNgjc3/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/dandi/download.py:52 Stacktrace: [1] pythrow() @ PythonCall.Core ~/.julia/packages/PythonCall/avYrV/src/Core/err.jl:89 [2] errcheck @ ~/.julia/packages/PythonCall/avYrV/src/Core/err.jl:10 [inlined] [3] pyimport(m::String) @ PythonCall.Core ~/.julia/packages/PythonCall/avYrV/src/Core/builtins.jl:1560 [4] top-level scope @ none:1 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] EvalInto @ ./boot.jl:494 [inlined] [7] |> @ ./operators.jl:973 [inlined] [8] _broadcast_getindex_evalf @ ./broadcast.jl:701 [inlined] [9] _broadcast_getindex @ ./broadcast.jl:674 [inlined] [10] _getindex @ ./broadcast.jl:622 [inlined] [11] getindex @ ./broadcast.jl:618 [inlined] [12] copyto_nonleaf!(dest::Vector{PythonCall.Core.Py}, bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(|>), Tuple{Base.Broadcast.Extruded{Vector{Expr}, Tuple{Bool}, Tuple{Int64}}, Base.RefValue{Core.EvalInto}}}, iter::Base.OneTo{Int64}, state::Int64, count::Int64) @ Base.Broadcast ./broadcast.jl:1106 [13] copy @ ./broadcast.jl:943 [inlined] [14] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(|>), Tuple{Vector{Expr}, Base.RefValue{Core.EvalInto}}}) @ Base.Broadcast ./broadcast.jl:896 [15] __init__() @ DANDIArchive ~/.julia/packages/DANDIArchive/B2vzr/src/DANDIArchive.jl:14 [16] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1417 [17] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1405 [18] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1293 [19] _include_from_serialized @ ./loading.jl:1247 [inlined] [20] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2089 [21] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2602 [22] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2468 [23] macro expansion @ ./loading.jl:2396 [inlined] [24] macro expansion @ ./lock.jl:376 [inlined] [25] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [26] require @ ./loading.jl:2336 [inlined] [27] eval_import_path @ ./module.jl:36 [inlined] [28] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [29] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [30] top-level scope @ ~/.julia/packages/DANDIArchive/B2vzr/test/runtests.jl:1 [31] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [32] top-level scope @ none:6 [33] eval(m::Module, e::Any) @ Core ./boot.jl:489 [34] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [35] _start() @ Base ./client.jl:553 during initialization of module DANDIArchive in expression starting at /home/pkgeval/.julia/packages/DANDIArchive/B2vzr/test/runtests.jl:1 Testing failed after 70.23s ERROR: LoadError: Package DANDIArchive errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2695 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2544 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:311 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [14] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 167.18s: package tests unexpectedly errored