Package evaluation of AdvancedHMC on Julia 1.13.0-DEV.971 (04e26c5eae*) started at 2025-08-10T19:14:33.867 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.79s ################################################################################ # Installation # Installing AdvancedHMC... Resolving package versions... Installed MicroCollections ──────────── v0.2.0 Installed CompositionsBase ──────────── v0.1.2 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed DefineSingletons ──────────── v0.1.2 Installed FillArrays ────────────────── v1.13.0 Installed AbstractTrees ─────────────── v0.4.5 Installed MacroTools ────────────────── v0.5.16 Installed DataStructures ────────────── v0.19.0 Installed HypergeometricFunctions ───── v0.3.28 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed ConstructionBase ──────────── v1.6.0 Installed AliasTables ───────────────── v1.1.3 Installed ConsoleProgressMonitor ────── v0.1.2 Installed ProgressLogging ───────────── v0.1.5 Installed OrderedCollections ────────── v1.8.1 Installed StatsBase ─────────────────── v0.34.6 Installed DataAPI ───────────────────── v1.16.0 Installed DataValueInterfaces ───────── v1.0.0 Installed ProgressMeter ─────────────── v1.10.4 Installed ArgCheck ──────────────────── v2.5.0 Installed StatsAPI ──────────────────── v1.7.1 Installed LoggingExtras ─────────────── v1.1.0 Installed Statistics ────────────────── v1.11.1 Installed InitialValues ─────────────── v0.3.1 Installed StaticArraysCore ──────────── v1.4.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed IrrationalConstants ───────── v0.2.4 Installed LogDensityProblemsAD ──────── v1.13.1 Installed LogDensityProblems ────────── v2.1.2 Installed TerminalLoggers ───────────── v0.1.7 Installed Requires ──────────────────── v1.3.1 Installed BangBang ──────────────────── v0.4.4 Installed LeftChildRightSiblingTrees ── v0.2.1 Installed Rmath ─────────────────────── v0.8.0 Installed SplittablesBase ───────────── v0.1.15 Installed StatsFuns ─────────────────── v1.5.0 Installed AbstractMCMC ──────────────── v5.7.2 Installed LogExpFunctions ───────────── v0.3.29 Installed Transducers ───────────────── v0.4.84 Installed AdvancedHMC ───────────────── v0.8.0 Installed Tables ────────────────────── v1.12.1 Installed PtrArrays ─────────────────── v1.3.0 Installed InverseFunctions ──────────── v0.1.17 Installed Reexport ──────────────────── v1.2.2 Installed Setfield ──────────────────── v1.1.2 Installed SpecialFunctions ──────────── v2.5.1 Installed Baselet ───────────────────── v0.1.1 Installed Missings ──────────────────── v1.2.0 Installed JLLWrappers ───────────────── v1.7.1 Installed Preferences ───────────────── v1.4.3 Installed TableTraits ───────────────── v1.0.1 Installed Accessors ─────────────────── v0.1.42 Installed DocStringExtensions ───────── v0.9.5 Installed SortingAlgorithms ─────────── v1.2.2 Installing 2 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.13/Project.toml` [0bf59076] + AdvancedHMC v0.8.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [80f14c24] + AbstractMCMC v5.7.2 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [0bf59076] + AdvancedHMC v0.8.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [a33af91c] + CompositionsBase v0.1.2 [88cd18e8] + ConsoleProgressMonitor v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.0 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.13.0 [34004b35] + HypergeometricFunctions v0.3.28 [22cec73e] + InitialValues v0.3.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 [6fdf6af0] + LogDensityProblems v2.1.2 [996a588d] + LogDensityProblemsAD v1.13.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [1914dd2f] + MacroTools v0.5.16 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [21216c6a] + Preferences v1.4.3 [33c8b6b6] + ProgressLogging v0.1.5 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [171d559e] + SplittablesBase v0.1.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [5d786b92] + TerminalLoggers v0.1.7 [28d57a85] + Transducers v0.4.84 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Installation completed after 6.72s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 3079.3 ms ✓ TestEnv 1 dependency successfully precompiled in 3 seconds. 27 already precompiled. ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:76 Precompiling package dependencies... Precompilation completed after 2356.97s ################################################################################ # Testing # Testing AdvancedHMC Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_92enPJ/Project.toml` [47edcb42] + ADTypes v1.16.0 [0bf59076] + AdvancedHMC v0.8.0 [4c88cf16] + Aqua v0.8.14 [76274a88] + Bijectors v0.15.8 [863f3e99] + Comonicon v1.0.8 [b0b7db55] + ComponentArrays v0.15.29 [31c24e10] + Distributions v0.25.120 [f6369f11] + ForwardDiff v1.0.1 [c3a54625] + JET v0.10.6 [c7f686f2] + MCMCChains v7.1.0 [1dea7af3] + OrdinaryDiffEq v6.101.0 [91a5bcdd] + Plots v1.40.18 [e0db7c4e] + ReTest v0.3.4 [b8865327] + UnicodePlots v3.8.1 [e88e6eb3] + Zygote v0.7.10 [44cfe95a] ~ Pkg ⇒ v1.13.0 Updating `/tmp/jl_92enPJ/Manifest.toml` [47edcb42] + ADTypes v1.16.0 [621f4979] + AbstractFFTs v1.5.0 [79e6a3ab] + Adapt v4.3.0 [0bf59076] + AdvancedHMC v0.8.0 [4c88cf16] + Aqua v0.8.14 [4fba245c] + ArrayInterface v7.19.0 [4c555306] + ArrayLayouts v1.11.2 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.7 [76274a88] + Bijectors v0.15.8 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + 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[0dad84c5] + ArgTools v1.1.2 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] ~ Pkg ⇒ v1.13.0 [3fa0cd96] + REPL v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [deac9b47] + LibCURL_jll v8.15.0+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_92enPJ/Project.toml` [47edcb42] ADTypes v1.16.0 [80f14c24] AbstractMCMC v5.7.2 [0bf59076] AdvancedHMC v0.8.0 [4c88cf16] Aqua v0.8.14 [76274a88] Bijectors v0.15.8 [863f3e99] Comonicon v1.0.8 [b0b7db55] ComponentArrays v0.15.29 [31c24e10] Distributions v0.25.120 [1a297f60] FillArrays v1.13.0 [f6369f11] ForwardDiff v1.0.1 [c3a54625] JET v0.10.6 [6fdf6af0] LogDensityProblems v2.1.2 [996a588d] LogDensityProblemsAD v1.13.1 [c7f686f2] MCMCChains v7.1.0 [1dea7af3] OrdinaryDiffEq v6.101.0 [91a5bcdd] Plots v1.40.18 [e0db7c4e] ReTest v0.3.4 [efcf1570] Setfield v1.1.2 [10745b16] Statistics v1.11.1 [b8865327] UnicodePlots v3.8.1 [e88e6eb3] Zygote v0.7.10 [37e2e46d] LinearAlgebra v1.13.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_92enPJ/Manifest.toml` [47edcb42] ADTypes v1.16.0 [621f4979] AbstractFFTs v1.5.0 [80f14c24] AbstractMCMC v5.7.2 [1520ce14] AbstractTrees v0.4.5 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Environment variables for testing PYTHON= LANG=C.UTF-8 PATH=/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin JULIA_CPU_THREADS=1 JULIA_NUM_PRECOMPILE_TASKS=1 DISPLAY=:1 PKGEVAL=true OPENBLAS_NUM_THREADS=1 CI=true JULIA_PKG_PRECOMPILE_AUTO=0 JULIA_PKGEVAL=true JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia: JULIA_NUM_THREADS=1 R_HOME=* HOME=/home/pkgeval OPENBLAS_MAIN_FREE=1 JULIA_LOAD_PATH=@:/tmp/jl_92enPJ Persistent tasks: Test Failed at /home/pkgeval/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:38 Expression: !(has_persistent_tasks(package; kwargs...)) Evaluated: !(has_persistent_tasks(Base.PkgId(Base.UUID("0bf59076-c3b1-5ca4-86bd-e02cd72cde3d"), "AdvancedHMC"))) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:745 [inlined] [2] test_persistent_tasks(package::Base.PkgId; broken::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:38 [3] test_persistent_tasks @ ~/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:34 [inlined] [4] #test_persistent_tasks#57 @ ~/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:43 [inlined] [5] test_persistent_tasks @ ~/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:42 [inlined] [6] macro expansion @ ~/.julia/packages/Aqua/MCcFg/src/Aqua.jl:109 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [8] test_all(testtarget::Module; ambiguities::Bool, unbound_args::Bool, undefined_exports::Bool, project_extras::Bool, stale_deps::Bool, deps_compat::Bool, piracies::Bool, persistent_tasks::Bool, undocumented_names::Bool) @ Aqua ~/.julia/packages/Aqua/MCcFg/src/Aqua.jl:109 Test Summary: | Pass Fail Total Time Aqua | 10 1 11 2m46.0s Method ambiguity | 1 1 9.7s Unbound type parameters | 1 1 0.2s Undefined exports | 1 1 0.0s Compare Project.toml and test/Project.toml | 1 1 0.4s Stale dependencies | 1 1 7.3s Compat bounds | 4 4 0.8s Piracy | 1 1 0.4s Persistent tasks | 1 1 2m09.1s RNG of the outermost testset: Random.Xoshiro(0x66fa4c5ce85fe425, 0xdc38993d358151c5, 0x6defb46119efb74a, 0x4c7d12eaf22dea46, 0x38be2266a9d3d5d0) ERROR: LoadError: Some tests did not pass: 10 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/test/quality.jl:7 in expression starting at /home/pkgeval/.julia/packages/AdvancedHMC/PZso2/test/runtests.jl:19 Testing failed after 233.37s ERROR: LoadError: Package AdvancedHMC errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2695 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2544 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:311 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [14] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval terminated after 2709.73s: test duration exceeded the time limit