Package evaluation of Pfam on Julia 1.13.0-DEV.966 (46c2a5c7e1*) started at 2025-08-07T13:37:12.965 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.63s ################################################################################ # Installation # Installing Pfam... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [275cd14a] + Pfam v2.2.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [692b3bcd] + JLLWrappers v1.7.1 [275cd14a] + Pfam v2.2.0 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [be1be57a] + Gzip_jll v1.14.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b27032c2] + LibCURL v0.6.4 [8f399da3] + Libdl v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+1 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [458c3c95] + OpenSSL_jll v3.5.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.65.0+0 Installation completed after 4.1s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 19.14s ################################################################################ # Testing # Testing Pfam Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_Yc4QLr/Project.toml` ⌅ [4c88cf16] ↑ Aqua v0.7.3 ⇒ v0.7.4 [275cd14a] + Pfam v2.2.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_Yc4QLr/Manifest.toml` ⌅ [4c88cf16] ↑ Aqua v0.7.3 ⇒ v0.7.4 [34da2185] ↑ Compat v4.10.0 ⇒ v4.18.0 [692b3bcd] + JLLWrappers v1.7.1 [275cd14a] + Pfam v2.2.0 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [be1be57a] + Gzip_jll v1.14.0+0 [c8ffd9c3] - MbedTLS_jll v2.28.2+0 [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] ↑ LibCURL v0.6.3 ⇒ v0.6.4 [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0 [44cfe95a] ↑ Pkg v1.9.2 ⇒ v1.13.0 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] - REPL [9a3f8284] ~ Random ⇒ v1.11.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [6462fe0b] ~ Sockets ⇒ v1.11.0 [f489334b] + StyledStrings v1.11.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] ↑ LibCURL_jll v7.84.0+0 ⇒ v8.15.0+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] ↑ LibSSH2_jll v1.10.2+0 ⇒ v1.11.3+1 [14a3606d] ↑ MozillaCACerts_jll v2022.10.11 ⇒ v2025.7.15 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [83775a58] ↑ Zlib_jll v1.2.13+0 ⇒ v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] ↑ nghttp2_jll v1.48.0+0 ⇒ v1.65.0+0 [3f19e933] ↑ p7zip_jll v17.4.0+0 ⇒ v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_Yc4QLr/Project.toml` ⌅ [4c88cf16] Aqua v0.7.4 [275cd14a] Pfam v2.2.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Yc4QLr/Manifest.toml` ⌅ [4c88cf16] Aqua v0.7.4 [34da2185] Compat v4.18.0 [692b3bcd] JLLWrappers v1.7.1 [275cd14a] Pfam v2.2.0 [21216c6a] Preferences v1.4.3 [92933f4c] ProgressMeter v1.10.4 [be1be57a] Gzip_jll v1.14.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ┌ Warning: `isbindingresolved(m::Module, var::Symbol)` is deprecated, use `true` instead. │ caller = walkmodules(f::Aqua.var"#undefined_exports##0#undefined_exports##1"{Vector{Symbol}}, x::Module) at exports.jl:5 └ @ Core ~/.julia/packages/Aqua/rmHe1/src/exports.jl:5 Piracy: Error During Test at /home/pkgeval/.julia/packages/Aqua/rmHe1/src/Aqua.jl:99 Got exception outside of a @test FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic` Stacktrace: [1] getproperty(x::Core.TypeName, f::Symbol) @ Base ./Base_compiler.jl:57 [2] all_methods(mods::Module; skip_deprecated::Bool) @ Aqua.Piracy ~/.julia/packages/Aqua/rmHe1/src/piracy.jl:55 [3] kwcall(::@NamedTuple{skip_deprecated::Bool}, ::typeof(Aqua.Piracy.all_methods), mods::Module) @ Aqua.Piracy ~/.julia/packages/Aqua/rmHe1/src/piracy.jl:21 [4] hunt(mod::Module; skip_deprecated::Bool, kwargs::@Kwargs{}) @ Aqua.Piracy ~/.julia/packages/Aqua/rmHe1/src/piracy.jl:194 [5] hunt(mod::Module) @ Aqua.Piracy ~/.julia/packages/Aqua/rmHe1/src/piracy.jl:193 [6] test_piracy(m::Module; broken::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/rmHe1/src/piracy.jl:218 [7] test_piracy(m::Module) @ Aqua ~/.julia/packages/Aqua/rmHe1/src/piracy.jl:217 [8] macro expansion @ ~/.julia/packages/Aqua/rmHe1/src/Aqua.jl:101 [inlined] [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [10] test_all(testtarget::Module; ambiguities::Bool, unbound_args::Bool, undefined_exports::Bool, project_extras::Bool, stale_deps::Bool, deps_compat::Bool, project_toml_formatting::Bool, piracy::Bool) @ Aqua ~/.julia/packages/Aqua/rmHe1/src/Aqua.jl:100 [11] test_all(testtarget::Module) @ Aqua ~/.julia/packages/Aqua/rmHe1/src/Aqua.jl:53 [12] top-level scope @ ~/.julia/packages/Pfam/RIF25/test/aqua.jl:6 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [14] macro expansion @ ~/.julia/packages/Pfam/RIF25/test/aqua.jl:6 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [16] top-level scope @ ~/.julia/packages/Pfam/RIF25/test/runtests.jl:1 [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [18] top-level scope @ none:6 [19] eval(m::Module, e::Any) @ Core ./boot.jl:489 [20] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [21] _start() @ Base ./client.jl:553 Test Summary: | Pass Error Total Time aqua | 8 1 9 32.4s Method ambiguity | 1 1 7.5s Unbound type parameters | 1 1 0.1s Undefined exports | 1 1 2.1s Compare Project.toml and test/Project.toml | 1 1 0.4s Stale dependencies | 1 1 4.6s Compat bounds | 1 1 2.6s Project.toml formatting | 2 2 0.8s Piracy | 1 1 3.0s RNG of the outermost testset: Random.Xoshiro(0x0993b9685406b2d7, 0x6cbfeddb674a6239, 0x10b2d80eba5fb1aa, 0x358565200f55a5a3, 0x19f77f24991bd949) ERROR: LoadError: Some tests did not pass: 8 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/Pfam/RIF25/test/aqua.jl:5 in expression starting at /home/pkgeval/.julia/packages/Pfam/RIF25/test/runtests.jl:1 Testing failed after 47.43s ERROR: LoadError: Package Pfam errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2695 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2544 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:311 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [14] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 96.27s: package tests unexpectedly errored