Package evaluation of GeoInterface on Julia 1.13.0-DEV.966 (46c2a5c7e1*) started at 2025-08-07T11:38:28.920 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.4s ################################################################################ # Installation # Installing GeoInterface... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [cf35fbd7] + GeoInterface v1.5.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [9a962f9c] + DataAPI v1.16.0 [411431e0] + Extents v0.1.6 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.5.0 Installation completed after 3.71s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 1281.97s ################################################################################ # Testing # Testing GeoInterface Status `/tmp/jl_uNWP3I/Project.toml` [13f3f980] CairoMakie v0.15.5 [9a962f9c] DataAPI v1.16.0 [e30172f5] Documenter v1.14.1 [411431e0] Extents v0.1.6 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.5.0 [ee78f7c6] Makie v0.24.5 [91a5bcdd] Plots v1.40.17 [8dfed614] Test v1.11.0 Status `/tmp/jl_uNWP3I/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.3.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [18cc8868] BaseDirs v1.3.2 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [159f3aea] Cairo v1.1.1 [13f3f980] CairoMakie v0.15.5 [d360d2e6] ChainRulesCore v1.25.2 [944b1d66] CodecZlib 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FreeTypeAbstraction v0.10.8 [28b8d3ca] GR v0.73.17 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.5.0 [5c1252a2] GeometryBasics v0.5.10 [d7ba0133] Git v1.4.0 [a2bd30eb] Graphics v1.1.3 [3955a311] GridLayoutBase v0.11.1 [42e2da0e] Grisu v1.0.2 [cd3eb016] HTTP v1.10.17 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [a98d9a8b] Interpolations v0.16.1 ⌅ [d1acc4aa] IntervalArithmetic v0.22.36 [8197267c] IntervalSets v0.7.11 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [b835a17e] JpegTurbo v0.1.6 [5ab0869b] KernelDensity v0.6.10 [b964fa9f] 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libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time Developer | 66 66 8.2s Test Summary: | Pass Total Time Defaults | 3 3 0.0s Test Summary: | Pass Total Time Feature | 2 2 0.1s Test Summary: | Pass Total Time FeatureCollection | 2 2 2.0s Test Summary: | Pass Total Time Raster | 1 1 0.0s Test Summary: | Pass Total Time Conversion | 4 4 0.1s Test Summary: | Pass Total Time Operations | 18 18 0.1s WARNING: Method definition geometry(Any) in module GeoInterface at /home/pkgeval/.julia/packages/GeoInterface/t53FE/src/interface.jl:70 overwritten in module Main at /home/pkgeval/.julia/packages/GeoInterface/t53FE/test/test_primitives.jl:489. Test Summary: | Pass Total Time Base Implementations | 124 124 5.0s Test Summary: | Pass Total Time extent and crs fallback to nothing on unknown objects | 2 2 0.0s Test Summary: | Pass Total Time Extents.jl extent fallback | 3 3 0.0s [ Info: `properties` keyword not used when wrapping a feature Test Summary: | Pass Total Time Wrapped geometry printing | 4 4 0.5s Precompiling packages... 2035.0 ms ✓ ComputePipeline 3548.8 ms ✓ ColorBrewer 30828.1 ms ✓ KernelDensity Info Given Makie was explicitly requested, output will be shown live  WARNING: Method definition adapt_storage(Type{Array{T, N} where N}, SparseArrays.SparseMatrixCSC{Tv, Ti} where Ti<:Integer where Tv) where {T} in module AdaptSparseArraysExt at /home/pkgeval/.julia/packages/Adapt/0LkKU/ext/AdaptSparseArraysExt.jl:9 overwritten in module AdaptSparseArraysExt on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 34774.9 ms ? Makie 3 dependencies successfully precompiled in 73 seconds. 261 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 1 dependency had output during precompilation: ┌ Makie │ [Output was shown above] └ Precompiling packages... 6989.4 ms ✓ GeometryBasics → GeometryBasicsGeoInterfaceExt 1 dependency successfully precompiled in 7 seconds. 39 already precompiled. WARNING: Method definition centralize_sumabs2!(AbstractArray{S, N} where N, SparseArrays.SparseMatrixCSC{Tv, Ti}, AbstractArray{T, N} where N where T) where {S, Tv, Ti} in module SparseArraysExt at /home/pkgeval/.julia/packages/Statistics/gbcbG/ext/SparseArraysExt.jl:39 overwritten in module SparseArraysExt on the same line (check for duplicate calls to `include`). WARNING: Method definition cov(SparseArrays.SparseMatrixCSC{Tv, Ti} where Ti<:Integer where Tv) in module SparseArraysExt at /home/pkgeval/.julia/packages/Statistics/gbcbG/ext/SparseArraysExt.jl:14 overwritten in module SparseArraysExt on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Statistics.cov), SparseArrays.SparseMatrixCSC{Tv, Ti} where Ti<:Integer where Tv) in module SparseArraysExt at /home/pkgeval/.julia/packages/Statistics/gbcbG/ext/SparseArraysExt.jl:14 overwritten in module SparseArraysExt on the same line (check for duplicate calls to `include`). ┌ Warning: Replacing module `SparseArraysExt` └ @ Base loading.jl:2521 WARNING: Method definition cor(FillArrays.AbstractFill{T, 2, Axes} where Axes) where {T<:Number} in module FillArraysStatisticsExt at /home/pkgeval/.julia/packages/FillArrays/lVl4c/ext/FillArraysStatisticsExt.jl:27 overwritten in module FillArraysStatisticsExt on the same line (check for duplicate calls to `include`). WARNING: Method definition cor(FillArrays.AbstractFill{T, 1, Axes} where Axes) where {T<:Number} in module FillArraysStatisticsExt at /home/pkgeval/.julia/packages/FillArrays/lVl4c/ext/FillArraysStatisticsExt.jl:26 overwritten in module FillArraysStatisticsExt on the same line (check for duplicate calls to `include`). WARNING: Method definition cov(FillArrays.AbstractFill{T, 2, Axes} where Axes) where {T<:Number} in module FillArraysStatisticsExt at /home/pkgeval/.julia/packages/FillArrays/lVl4c/ext/FillArraysStatisticsExt.jl:23 overwritten in module FillArraysStatisticsExt on the same line (check for duplicate calls to `include`). WARNING: Method definition cov(FillArrays.AbstractFill{T, 1, Axes} where Axes) where {T<:Number} in module FillArraysStatisticsExt at /home/pkgeval/.julia/packages/FillArrays/lVl4c/ext/FillArraysStatisticsExt.jl:22 overwritten in module FillArraysStatisticsExt on the same line (check for duplicate calls to `include`). WARNING: Method definition var(FillArrays.AbstractFill{T, N, Axes} where Axes where N) where {T<:Number} in module FillArraysStatisticsExt at /home/pkgeval/.julia/packages/FillArrays/lVl4c/ext/FillArraysStatisticsExt.jl:17 overwritten in module FillArraysStatisticsExt on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Statistics.cov), FillArrays.AbstractFill{T, 2, Axes} where Axes) where {T<:Number} in module FillArraysStatisticsExt at /home/pkgeval/.julia/packages/FillArrays/lVl4c/ext/FillArraysStatisticsExt.jl:23 overwritten in module FillArraysStatisticsExt on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Statistics.cov), FillArrays.AbstractFill{T, 1, Axes} where Axes) where {T<:Number} in module FillArraysStatisticsExt at /home/pkgeval/.julia/packages/FillArrays/lVl4c/ext/FillArraysStatisticsExt.jl:22 overwritten in module FillArraysStatisticsExt on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Statistics.var), FillArrays.AbstractFill{T, N, Axes} where Axes where N) where {T<:Number} in module FillArraysStatisticsExt at /home/pkgeval/.julia/packages/FillArrays/lVl4c/ext/FillArraysStatisticsExt.jl:17 overwritten in module FillArraysStatisticsExt on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Statistics.cor), FillArrays.AbstractFill{T, 2, Axes} where Axes) where {T<:Number} in module FillArraysStatisticsExt at /home/pkgeval/.julia/packages/FillArrays/lVl4c/ext/FillArraysStatisticsExt.jl:27 overwritten in module FillArraysStatisticsExt on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Statistics.mean), Union{Function, Type}, FillArrays.AbstractFill{T, N, Axes} where Axes where N where T) in module FillArraysStatisticsExt at /home/pkgeval/.julia/packages/FillArrays/lVl4c/ext/FillArraysStatisticsExt.jl:10 overwritten in module FillArraysStatisticsExt on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Statistics.mean), FillArrays.AbstractFill{T, N, Axes} where Axes where N where T) in module FillArraysStatisticsExt at /home/pkgeval/.julia/packages/FillArrays/lVl4c/ext/FillArraysStatisticsExt.jl:9 overwritten in module FillArraysStatisticsExt on the same line (check for duplicate calls to `include`). WARNING: Method definition mean(FillArrays.AbstractFill{T, N, Axes} where Axes where N where T) in module FillArraysStatisticsExt at /home/pkgeval/.julia/packages/FillArrays/lVl4c/ext/FillArraysStatisticsExt.jl:9 overwritten in module FillArraysStatisticsExt on the same line (check for duplicate calls to `include`). WARNING: Method definition mean(Union{Function, Type}, FillArrays.AbstractFill{T, N, Axes} where Axes where N where T) in module FillArraysStatisticsExt at /home/pkgeval/.julia/packages/FillArrays/lVl4c/ext/FillArraysStatisticsExt.jl:10 overwritten in module FillArraysStatisticsExt on the same line (check for duplicate calls to `include`). ┌ Warning: Replacing module `FillArraysStatisticsExt` └ @ Base loading.jl:2521 Precompiling packages... 74261.2 ms ✓ GeoInterface → GeoInterfaceMakieExt 1 dependency successfully precompiled in 76 seconds. 268 already precompiled. Precompiling packages... 1731.2 ms ✓ Graphics 1815.9 ms ✓ Pango_jll 3018.8 ms ✓ Cairo 335928.1 ms ✓ CairoMakie 4 dependencies successfully precompiled in 344 seconds. 266 already precompiled. Test Summary: | Pass Total Time Makie plotting MultiLineString shows additional lines #83 | 1 1 3.2s Test Summary: | Pass Total Time smoketest 2d | 5 5 3m38.9s Test Summary: | Pass Total Time Make sure that Makie can plot NaN-based geometry correctly | 4 4 15.6s Test Summary: | Pass Total Time Mixed geometry types work | 2 2 9.2s Test Summary: | Pass Total Time handle missing values | 4 4 13.2s Precompiling packages... 6628.4 ms ✓ Latexify 9891.5 ms ✓ PlotThemes 8855.9 ms ✓ RecipesPipeline 1688.9 ms ✓ Xorg_xcb_util_jll HTTP Waiting for background task / IO / timer. [pid 490] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 380 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_70461.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000076d566a3ca60 Total snapshots: 694. Utilization: 0% ╎694 @Base/task.jl:1129 wait_forever() 693╎ 694 @Base/task.jl:1192 wait() ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_70461.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) [pid 490] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000073af88fe8d30 Total snapshots: 685. Utilization: 0% ╎685 @Base/task.jl:1129 wait_forever() 684╎ 685 @Base/task.jl:1192 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_70461.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 23206334 (Pool: 23205732; Big: 602); GC: 24 [490] signal 15: Terminated in expression starting at none:0 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_70461.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 19992340 (Pool: 19992130; Big: 210); GC: 13 [380] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/GeoInterface/t53FE/test/test_plots.jl:3 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_70461.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 116234457 (Pool: 116232879; Big: 1578); GC: 61 PkgEval terminated after 2732.56s: test duration exceeded the time limit