Package evaluation of StochasticGene on Julia 1.13.0-DEV.955 (13f6b3b5c0*) started at 2025-08-04T05:37:18.918 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 11.09s ################################################################################ # Installation # Installing StochasticGene... Resolving package versions... Installed FastPower ─────────────────────────── v1.1.3 Installed MKL_jll ───────────────────────────── v2025.2.0+0 Installed CommonWorldInvalidations ──────────── v1.0.0 Installed SIMDTypes ─────────────────────────── v0.1.0 Installed InlineStrings ─────────────────────── v1.4.4 Installed OrderedCollections ────────────────── v1.8.1 Installed EnzymeCore ────────────────────────── v0.8.12 Installed OrdinaryDiffEqRosenbrock ──────────── v1.12.0 Installed PreallocationTools ────────────────── v0.4.29 Installed MultivariateStats ─────────────────── v0.10.3 Installed Optim ─────────────────────────────── v1.13.2 Installed Compiler ──────────────────────────── v0.1.1 Installed NonlinearSolveSpectralMethods ─────── v1.2.0 Installed OrdinaryDiffEqExponentialRK ───────── v1.5.0 Installed CpuId ─────────────────────────────── v0.3.1 Installed SentinelArrays ────────────────────── v1.4.8 Installed OrdinaryDiffEqFIRK ────────────────── v1.13.0 Installed StaticArrayInterface ──────────────── v1.8.0 Installed Revise ────────────────────────────── v3.8.1 Installed OrdinaryDiffEqQPRK ────────────────── v1.1.0 Installed OpenSpecFun_jll ───────────────────── v0.5.6+0 Installed NaNMath ───────────────────────────── v1.1.3 Installed NonlinearSolveBase ────────────────── v1.13.0 Installed LoweredCodeUtils ──────────────────── v3.4.3 Installed QuadGK ────────────────────────────── v2.11.2 Installed FastBroadcast ─────────────────────── v0.3.5 Installed EnumX ─────────────────────────────── v1.0.5 Installed Arpack ────────────────────────────── v0.5.4 Installed NLSolversBase ─────────────────────── v7.10.0 Installed OrdinaryDiffEqLowOrderRK ──────────── v1.3.0 Installed Tables ────────────────────────────── v1.12.1 Installed LinearSolve ───────────────────────── v3.24.0 Installed DiffEqBase ────────────────────────── v6.181.0 Installed BracketingNonlinearSolve ──────────── v1.3.0 Installed Reexport ──────────────────────────── v1.2.2 Installed Missings ──────────────────────────── v1.2.0 Installed Static ────────────────────────────── v1.2.0 Installed Jieko ─────────────────────────────── v0.2.1 Installed InverseFunctions ──────────────────── v0.1.17 Installed Preferences ───────────────────────── v1.4.3 Installed NonlinearSolve ────────────────────── v4.10.0 Installed OrdinaryDiffEqNordsieck ───────────── v1.1.0 Installed RegistryInstances ─────────────────── v0.1.0 Installed LaTeXStrings ──────────────────────── v1.4.0 Installed MaybeInplace ──────────────────────── v0.1.4 Installed TableTraits ───────────────────────── v1.0.1 Installed OrdinaryDiffEqAdamsBashforthMoulton ─ v1.2.0 Installed Crayons ───────────────────────────── v4.1.1 Installed SortingAlgorithms ─────────────────── v1.2.1 Installed OrdinaryDiffEqLinear ──────────────── v1.3.0 Installed UnPack ────────────────────────────── v1.0.2 Installed ADTypes ───────────────────────────── v1.16.0 Installed MacroTools ────────────────────────── v0.5.16 Installed OpenSSH_jll ───────────────────────── v10.0.1+0 Installed RecursiveArrayTools ───────────────── v3.36.0 Installed GenericSchur ──────────────────────── v0.5.5 Installed DataStructures ────────────────────── v0.18.22 Installed DiffResults ───────────────────────── v1.1.0 Installed ManualMemory ──────────────────────── v0.1.8 Installed oneTBB_jll ────────────────────────── v2022.0.0+0 Installed AbstractTrees ─────────────────────── v0.4.5 Installed DelimitedFiles ────────────────────── v1.9.1 Installed SparseMatrixColorings ─────────────── v0.4.21 Installed CodecZlib ─────────────────────────── v0.7.8 Installed FillArrays ────────────────────────── v1.13.0 Installed StatsBase ─────────────────────────── v0.34.5 Installed ExprTools ─────────────────────────── v0.1.10 Installed SciMLJacobianOperators ────────────── v0.1.8 Installed DataValueInterfaces ───────────────── v1.0.0 Installed IntelOpenMP_jll ───────────────────── v2025.2.0+0 Installed ArrayInterface ────────────────────── v7.19.0 Installed LayoutPointers ────────────────────── v0.1.17 Installed CommonSubexpressions ──────────────── v0.3.1 Installed ConcreteStructs ───────────────────── v0.2.3 Installed Expat_jll ─────────────────────────── v2.6.5+0 Installed GPUArraysCore ─────────────────────── v0.2.0 Installed TruncatedStacktraces ──────────────── v1.4.0 Installed IrrationalConstants ───────────────── v0.2.4 Installed OrdinaryDiffEqRKN ─────────────────── v1.2.0 Installed ArrayLayouts ──────────────────────── v1.11.2 Installed OrdinaryDiffEqStabilizedIRK ───────── v1.3.0 Installed LSODA_jll ─────────────────────────── v0.1.2+0 Installed OrdinaryDiffEqExtrapolation ───────── v1.5.0 Installed Setfield ──────────────────────────── v1.1.2 Installed PooledArrays ──────────────────────── v1.4.3 Installed OrdinaryDiffEqPRK ─────────────────── v1.1.0 Installed Moshi ─────────────────────────────── v0.3.7 Installed NonlinearSolveQuasiNewton ─────────── v1.7.0 Installed PDMats ────────────────────────────── v0.11.35 Installed WorkerUtilities ───────────────────── v1.6.1 Installed DocStringExtensions ───────────────── v0.9.5 Installed OrdinaryDiffEqHighOrderRK ─────────── v1.2.0 Installed IOCapture ─────────────────────────── v0.2.5 Installed DifferentiationInterface ──────────── v0.7.4 Installed CompositionsBase ──────────────────── v0.1.2 Installed Rmath_jll ─────────────────────────── v0.5.1+0 Installed ForwardDiff ───────────────────────── v1.0.1 Installed VersionParsing ────────────────────── v1.3.0 Installed CommonSolve ───────────────────────── v0.2.4 Installed ZMQ ───────────────────────────────── v1.4.1 Installed OrdinaryDiffEq ────────────────────── v6.101.0 Installed SimpleUnPack ──────────────────────── v1.1.0 Installed OrdinaryDiffEqStabilizedRK ────────── v1.2.0 Installed BitTwiddlingConvenienceFunctions ──── v0.1.6 Installed AliasTables ───────────────────────── v1.1.3 Installed LineSearch ────────────────────────── v0.1.4 Installed IteratorInterfaceExtensions ───────── v1.0.0 Installed RecipesBase ───────────────────────── v1.3.4 Installed DataAPI ───────────────────────────── v1.16.0 Installed FunctionWrappersWrappers ──────────── v0.1.3 Installed SciMLOperators ────────────────────── v1.4.0 Installed InvertedIndices ───────────────────── v1.3.1 Installed OrdinaryDiffEqSymplecticRK ────────── v1.4.0 Installed OrdinaryDiffEqBDF ─────────────────── v1.7.0 Installed Conda ─────────────────────────────── v1.10.2 Installed Krylov ────────────────────────────── v0.10.1 Installed SciMLStructures ───────────────────── v1.7.0 Installed StaticArraysCore ──────────────────── v1.4.3 Installed OrdinaryDiffEqLowStorageRK ────────── v1.3.0 Installed FastGaussQuadrature ───────────────── v1.0.2 Installed CodeTracking ──────────────────────── v2.0.0 Installed StaticArrays ──────────────────────── v1.9.14 Installed LSODA ─────────────────────────────── v0.7.5 Installed AbstractFFTs ──────────────────────── v1.5.0 Installed FunctionWrappers ──────────────────── v1.1.3 Installed OrdinaryDiffEqDifferentiation ─────── v1.10.1 Installed Requires ──────────────────────────── v1.3.1 Installed StringManipulation ────────────────── v0.4.1 Installed OrdinaryDiffEqNonlinearSolve ──────── v1.11.0 Installed DiffRules ─────────────────────────── v1.15.1 Installed LogExpFunctions ───────────────────── v0.3.29 Installed PrettyTables ──────────────────────── v2.4.0 Installed JuliaInterpreter ──────────────────── v0.10.4 Installed Git_jll ───────────────────────────── v2.50.1+0 Installed OrdinaryDiffEqCore ────────────────── v1.26.2 Installed Distributions ─────────────────────── v0.25.120 Installed Documenter ────────────────────────── v1.14.1 Installed SciMLBase ─────────────────────────── v2.107.0 Installed JSON ──────────────────────────────── v0.21.4 Installed Parsers ───────────────────────────── v2.8.3 Installed NonlinearSolveFirstOrder ──────────── v1.6.0 Installed Rmath ─────────────────────────────── v0.8.0 Installed OrdinaryDiffEqExplicitRK ──────────── v1.1.0 Installed libsodium_jll ─────────────────────── v1.0.21+0 Installed FastClosures ──────────────────────── v0.3.2 Installed FiniteDiff ────────────────────────── v2.27.0 Installed Arpack_jll ────────────────────────── v3.5.1+1 Installed CloseOpenIntervals ────────────────── v0.1.13 Installed Polyester ─────────────────────────── v0.7.18 Installed StatsFuns ─────────────────────────── v1.5.0 Installed OrdinaryDiffEqIMEXMultistep ───────── v1.4.0 Installed IJulia ────────────────────────────── v1.29.2 Installed ZeroMQ_jll ────────────────────────── v4.3.6+0 Installed OrdinaryDiffEqFeagin ──────────────── v1.1.0 Installed WeakRefStrings ────────────────────── v1.4.2 Installed JLLWrappers ───────────────────────── v1.7.1 Installed DataFrames ────────────────────────── v1.7.0 Installed OrdinaryDiffEqSSPRK ───────────────── v1.3.0 Installed OrdinaryDiffEqPDIRK ───────────────── v1.3.1 Installed ThreadingUtilities ────────────────── v0.5.5 Installed OrdinaryDiffEqSDIRK ───────────────── v1.4.0 Installed OrdinaryDiffEqDefault ─────────────── v1.5.0 Installed FilePathsBase ─────────────────────── v0.9.24 Installed Accessors ─────────────────────────── v0.1.42 Installed ExponentialUtilities ──────────────── v1.27.0 Installed Adapt ─────────────────────────────── v4.3.0 Installed RuntimeGeneratedFunctions ─────────── v0.5.15 Installed HypergeometricFunctions ───────────── v0.3.28 Installed ConstructionBase ──────────────────── v1.6.0 Installed OrdinaryDiffEqVerner ──────────────── v1.3.0 Installed SymbolicIndexingInterface ─────────── v0.3.42 Installed PositiveFactorizations ────────────── v0.2.4 Installed Compat ────────────────────────────── v4.18.0 Installed StrideArraysCore ──────────────────── v0.5.7 Installed Statistics ────────────────────────── v1.11.1 Installed TranscodingStreams ────────────────── v0.11.3 Installed PrecompileTools ───────────────────── v1.3.2 Installed StatsAPI ──────────────────────────── v1.7.1 Installed TimerOutputs ──────────────────────── v0.5.29 Installed MarkdownAST ───────────────────────── v0.1.2 Installed LazyArrays ────────────────────────── v2.6.2 Installed ExproniconLite ────────────────────── v0.10.14 Installed CSV ───────────────────────────────── v0.10.15 Installed ChainRulesCore ────────────────────── v1.25.2 Installed StochasticGene ────────────────────── v1.5.10 Installed CPUSummary ────────────────────────── v0.2.6 Installed Parameters ────────────────────────── v0.12.3 Installed IfElse ────────────────────────────── v0.1.1 Installed MuladdMacro ───────────────────────── v0.2.4 Installed SoftGlobalScope ───────────────────── v1.1.0 Installed PtrArrays ─────────────────────────── v1.3.0 Installed LazilyInitializedFields ───────────── v1.3.0 Installed SpecialFunctions ──────────────────── v2.5.1 Installed Git ───────────────────────────────── v1.4.0 Installed SimpleNonlinearSolve ──────────────── v2.7.0 Installed FFTW_jll ──────────────────────────── v3.3.11+0 Installed Libiconv_jll ──────────────────────── v1.18.0+0 Installed OrdinaryDiffEqTsit5 ───────────────── v1.2.0 Installed PolyesterWeave ────────────────────── v0.2.2 Installed FFTW ──────────────────────────────── v1.9.0 Installed LineSearches ──────────────────────── v7.4.0 Installed OrdinaryDiffEqFunctionMap ─────────── v1.2.0 Installed ANSIColoredPrinters ───────────────── v0.0.1 Installing 12 artifacts Installed artifact Expat 271.4 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Arpack 147.2 KiB Installed artifact LSODA 24.9 KiB Installed artifact oneTBB 435.6 KiB Installed artifact Rmath 121.9 KiB Installed artifact libsodium 1.6 MiB Installed artifact ZeroMQ 316.1 KiB Installed artifact Libiconv 1.9 MiB Installed artifact FFTW 2.2 MiB Installed artifact OpenSSH 4.2 MiB Installed artifact Git 48.8 MiB Updating `~/.julia/environments/v1.13/Project.toml` [a2598c62] + StochasticGene v1.5.10 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.16.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.19.0 [4c555306] + ArrayLayouts v1.11.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + BracketingNonlinearSolve v1.3.0 [2a0fbf3d] + CPUSummary v0.2.6 [336ed68f] + CSV v0.10.15 [d360d2e6] + ChainRulesCore v1.25.2 [fb6a15b2] + CloseOpenIntervals v0.1.13 [da1fd8a2] + CodeTracking v2.0.0 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.0 [807dbc54] + Compiler v0.1.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [8f4d0f93] + Conda v1.10.2 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [2b5f629d] + DiffEqBase v6.181.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.4 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [e30172f5] + Documenter v1.14.1 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.12 [d4d017d3] + ExponentialUtilities v1.27.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7a1cc6ca] + FFTW v1.9.0 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.0.2 [a4df4552] + FastPower v1.1.3 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [f6369f11] + ForwardDiff v1.0.1 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [c145ed77] + GenericSchur v0.5.5 [d7ba0133] + Git v1.4.0 [34004b35] + HypergeometricFunctions v0.3.28 [7073ff75] + IJulia v1.29.2 [b5f81e59] + IOCapture v0.2.5 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.4 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [ae98c720] + Jieko v0.2.1 [aa1ae85d] + JuliaInterpreter v0.10.4 [ba0b0d4f] + Krylov v0.10.1 [7f56f5a3] + LSODA v0.7.5 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [0e77f7df] + LazilyInitializedFields v1.3.0 [5078a376] + LazyArrays v2.6.2 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [7ed4a6bd] + LinearSolve v3.24.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [6f1432cf] + LoweredCodeUtils v3.4.3 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [d0879d2d] + MarkdownAST v0.1.2 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [6f286f6a] + MultivariateStats v0.10.3 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [8913a72c] + NonlinearSolve v4.10.0 [be0214bd] + NonlinearSolveBase v1.13.0 [5959db7a] + NonlinearSolveFirstOrder v1.6.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.7.0 [26075421] + NonlinearSolveSpectralMethods v1.2.0 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [1dea7af3] + OrdinaryDiffEq v6.101.0 [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.2.0 [6ad6398a] + OrdinaryDiffEqBDF v1.7.0 [bbf590c4] + OrdinaryDiffEqCore v1.26.2 [50262376] + OrdinaryDiffEqDefault v1.5.0 [4302a76b] + OrdinaryDiffEqDifferentiation v1.10.1 [9286f039] + OrdinaryDiffEqExplicitRK v1.1.0 [e0540318] + OrdinaryDiffEqExponentialRK v1.5.0 [becaefa8] + OrdinaryDiffEqExtrapolation v1.5.0 [5960d6e9] + OrdinaryDiffEqFIRK v1.13.0 [101fe9f7] + OrdinaryDiffEqFeagin v1.1.0 [d3585ca7] + OrdinaryDiffEqFunctionMap v1.2.0 [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.2.0 [9f002381] + OrdinaryDiffEqIMEXMultistep v1.4.0 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SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building IJulia → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/016d15e5d186b2dd59ff96e05cb13eea542b54f6/build.log` Installation completed after 69.92s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4345.4 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 26 already precompiled. Precompiling package dependencies... Precompilation completed after 1771.26s ################################################################################ # Testing # Testing StochasticGene Status `/tmp/jl_JfzQNR/Project.toml` [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.7.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.120 [e30172f5] Documenter v1.14.1 [7a1cc6ca] FFTW v1.9.0 [7073ff75] IJulia v1.29.2 [682c06a0] JSON v0.21.4 [7f56f5a3] LSODA v0.7.5 [6f286f6a] MultivariateStats v0.10.3 [429524aa] Optim v1.13.2 [1dea7af3] OrdinaryDiffEq v6.101.0 [295af30f] Revise v3.8.1 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.5 [a2598c62] StochasticGene v1.5.10 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_JfzQNR/Manifest.toml` [47edcb42] ADTypes v1.16.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 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v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Sampling Histogram count: 6774.0 Sampling Sampling Sampling StochasticGene: Test Failed at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/test/runtests.jl:29 Expression: isapprox(h1, h2, rtol = 0.2) Evaluated: isapprox([4.1255401746386024e-30, 1.7930591498959088e-28, 3.9873692713624356e-27, 6.035489218471435e-26, 6.985739756611881e-25, 6.5885934756202834e-24, 5.270653210553043e-23, 3.6762420474329287e-22, 2.2811005079779967e-21, 1.2785729435907653e-20 … 0.0045502644672183925, 0.004545615439777404, 0.004540971158242653, 0.004536331617492368, 0.004531696812411986, 0.004527066737895345, 0.004522441388828484, 0.004517820760101639, 0.004513204846604449, 0.004508593643221748], [3.438590883468896e-6, 1.7407391631925484e-6, 7.781033656518165e-6, 7.0990686141183654e-6, 3.024040995442249e-8, 1.8120348512240452e-7, 2.735208609781282e-7, 4.462177684279964e-7, 4.07759430030024e-7, 5.161166621183803e-7 … 0.003456015003793802, 0.003534159763179366, 0.003472820328392848, 0.0032913228227231515, 0.0034711397959329435, 0.0033669467834188584, 0.0035307986982595564, 0.003452653938873993, 0.0033383777316004803, 0.0033551830561995262]; rtol = 0.2) Stacktrace: [1] top-level scope @ ~/.julia/packages/StochasticGene/iWmSF/test/runtests.jl:13 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [3] macro expansion @ ~/.julia/packages/StochasticGene/iWmSF/test/runtests.jl:29 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:745 [inlined] ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1437 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm16DebugHandlerBaseD1Ev at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm10DwarfDebugD0Ev at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm10AsmPrinter14doFinalizationERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager14doFinalizationERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1612 addModule at /source/src/jitlayers.cpp:2093 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:873 jl_compile_method_internal at /source/src/gf.c:3527 _jl_invoke at /source/src/gf.c:4007 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2847 _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 _include at ./loading.jl:2907 include at ./Base.jl:312 IncludeInto at ./Base.jl:313 jfptr_IncludeInto_63745.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 exec_options at ./client.jl:286 _start at ./client.jl:553 jfptr__start_63843.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7d5bf17d9249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_53872.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000072a702a20d30 Total snapshots: 441. Utilization: 0% ╎441 @Base/task.jl:1129 wait_forever() 440╎ 441 @Base/task.jl:1192 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_53872.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 28116415 (Pool: 28115470; Big: 945); GC: 42 [1437] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/test/runtests.jl:11 free_stenv at /source/src/subtype.c:349 [inlined] jl_type_intersection_env_s at /source/src/subtype.c:4606 jl_typemap_intersection_node_visitor at /source/src/typemap.c:543 jl_typemap_intersection_visitor at /source/src/typemap.c:805 jl_typemap_intersection_visitor at /source/src/typemap.c:726 ml_matches at /source/src/gf.c:4826 ml_matches at /source/src/gf.c:4735 [inlined] _gf_invoke_lookup at /source/src/gf.c:4223 [inlined] _gf_invoke_lookup at /source/src/gf.c:4215 [inlined] ijl_gf_invoke_lookup at /source/src/gf.c:4237 jl_gf_invoke at /source/src/gf.c:4269 _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] jl_f__apply_iterate at /source/src/builtins.c:864 hcat at /source/usr/share/julia/stdlib/v1.13/SparseArrays/src/sparsevector.jl:1307 _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 make_trace at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/simulator_coupled.jl:664 unknown function (ip: 0x7d5bb87f0b77) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 #simulator#60 at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/simulator_coupled.jl:227 simulator at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/simulator_coupled.jl:112 unknown function (ip: 0x7d5bb87ef316) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 #simulate_trace_vector#67 at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/simulator_coupled.jl:608 simulate_trace_vector at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/simulator_coupled.jl:600 [inlined] #test_fit_trace#191 at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/test.jl:263 test_fit_trace at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/test.jl:262 unknown function (ip: 0x7d5bb87d4dbf) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2847 _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 _include at ./loading.jl:2907 include at ./Base.jl:312 IncludeInto at ./Base.jl:313 jfptr_IncludeInto_63745.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 exec_options at ./client.jl:286 _start at ./client.jl:553 jfptr__start_63843.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7d5bf17d9249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 3182890631 (Pool: 3182889697; Big: 934); GC: 5344 PkgEval terminated after 2726.89s: test duration exceeded the time limit