Package evaluation of TaijaInteroperability on Julia 1.13.0-DEV.935 (f5c55e808c*) started at 2025-07-31T11:49:17.496 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.92s ################################################################################ # Installation # Installing TaijaInteroperability... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8949ac52] + TaijaInteroperability v1.0.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [65ce6f38] + PackageExtensionCompat v1.0.2 [8949ac52] + TaijaInteroperability v1.0.2 Installation completed after 4.22s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: PyTorchModelExt Failed to precompile PyTorchModelExt [2a683f5b-993e-5c5e-83c5-168b46f7759e] to "/home/pkgeval/.julia/compiled/v1.13/PyTorchModelExt/jl_6mYhwl" (ProcessExited(1)). CondaPkg Found dependencies: /home/pkgeval/.julia/packages/TaijaInteroperability/tpgxD/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/avYrV/CondaPkg.toml CondaPkg Resolving changes + numpy + openssl + python + pytorch CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_Ou1HiR/.CondaPkg ✔ Created /tmp/jl_Ou1HiR/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_Ou1HiR/.CondaPkg/pixi.toml │ [dependencies] │ openssl = ">=3, <3.6" │ pytorch = "*" │ numpy = "*" │ │ [dependencies.python] │ build = "*cpython*" │ channel = "conda-forge" │ version = ">=3.8,<4" │ │ [project] │ description = "automatically generated by CondaPkg.jl" │ name = ".CondaPkg" │ channel-priority = "strict" │ platforms = ["linux-64"] └ channels = ["conda-forge", "pytorch"] CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_Ou1HiR/.CondaPkg/pixi.toml ✔ The default environment has been installed. ERROR: LoadError: UndefVarError: `AbstractDifferentiableModel` not defined in `PyTorchModelExt` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/TaijaInteroperability/tpgxD/ext/PyTorchModelExt/models.jl:3 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [3] top-level scope @ ~/.julia/packages/TaijaInteroperability/tpgxD/ext/PyTorchModelExt/PyTorchModelExt.jl:9 [4] include(mod::Module, _path::String) @ Base ./Base.jl:311 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3002 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2848 [9] include_string @ ./loading.jl:2858 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [11] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/TaijaInteroperability/tpgxD/ext/PyTorchModelExt/models.jl:3 in expression starting at /home/pkgeval/.julia/packages/TaijaInteroperability/tpgxD/ext/PyTorchModelExt/PyTorchModelExt.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 2142.62s ################################################################################ # Testing # Testing TaijaInteroperability Status `/tmp/jl_GMbY6O/Project.toml` [4c88cf16] Aqua v0.8.13 [992eb4ea] CondaPkg v0.2.29 [2f13d31b] CounterfactualExplanations v1.4.5 ⌅ [587475ba] Flux v0.14.25 [c52c1a26] LaplaceRedux v1.2.0 [65ce6f38] PackageExtensionCompat v1.0.2 [6099a3de] PythonCall v0.9.26 [9d524318] TaijaData v1.1.7 [8949ac52] TaijaInteroperability v1.0.2 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_GMbY6O/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors 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SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [605ecd9f] ShowCases v0.1.0 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [171d559e] SplittablesBase v0.1.15 [cae243ae] StackViews v0.1.2 [90137ffa] StaticArrays v1.9.14 [1e83bf80] StaticArraysCore v1.4.3 [c062fc1d] StatisticalMeasuresBase v0.1.2 [64bff920] StatisticalTraits v3.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [4db3bf67] StridedViews v0.4.1 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 [09ab397b] StructArrays v0.7.1 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3eeacb1d] TabularDisplay v1.3.0 [10284c91] TaijaBase v1.2.3 [9d524318] TaijaData v1.1.7 [8949ac52] TaijaInteroperability v1.0.2 [62fd8b95] TensorCore v0.1.1 [ac1d9e8a] ThreadsX v0.1.12 [3bb67fe8] 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[2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: Method definition _dummy_backedge() in module Memoization at /home/pkgeval/.julia/packages/Memoization/ON3Za/src/Memoization.jl:49 overwritten at /home/pkgeval/.julia/packages/Memoization/ON3Za/src/Memoization.jl:65. CondaPkg Found dependencies: /home/pkgeval/.julia/packages/TaijaInteroperability/tpgxD/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/avYrV/CondaPkg.toml CondaPkg Resolving changes + numpy + openssl + python + pytorch CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_GMbY6O/.CondaPkg ✔ Created /tmp/jl_GMbY6O/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_GMbY6O/.CondaPkg/pixi.toml │ [dependencies] │ openssl = ">=3, <3.6" │ pytorch = "*" │ numpy = "*" │ │ [dependencies.python] │ build = "*cpython*" │ channel = "conda-forge" │ version = ">=3.8,<4" │ │ [project] │ description = "automatically generated by CondaPkg.jl" │ name = ".CondaPkg" │ channel-priority = "strict" │ platforms = ["linux-64"] └ channels = ["conda-forge", "pytorch"] CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_GMbY6O/.CondaPkg/pixi.toml ✔ The default environment has been installed. Precompiling packages... 4682.1 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 1 dependency successfully precompiled in 5 seconds. 11 already precompiled. Precompiling packages... 1112.7 ms ✓ StridedViews → StridedViewsPtrArraysExt 1397.5 ms ✓ libaec_jll 1418.5 ms ✓ StringEncodings 6542.4 ms ✓ Chemfiles HTTP Waiting for background task / IO / timer. [pid 1247] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 1247] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 1247] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 1247] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 1247] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 1247] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 1247] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. 155196.4 ms ✓ HTTP 5401.6 ms ✓ NPZ 8168.1 ms ✓ ImageShow 29169.1 ms ✓ CSV 2924.5 ms ✓ Unitful → ForwardDiffExt 5100.7 ms ✓ LLVM → BFloat16sExt 15673.0 ms ✓ GPUArrays 5700.1 ms ✓ HDF5_jll 5419.2 ms ✓ Pickle 5870.2 ms ✓ DataDeps 6339.7 ms ✓ FileIO → HTTPExt 6451.4 ms ✓ MLDataDevices → MLDataDevicesGPUArraysExt 8192.9 ms ✓ Zygote → ZygoteColorsExt ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1106 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_30623.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2350 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_30623.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2350 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007317cbad8970 Total snapshots: 149. Utilization: 0% ╎149 @Base/task.jl:1129 wait_forever() 148╎ 149 @Base/task.jl:1192 wait() [1106] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/TaijaInteroperability/tpgxD/test/runtests.jl:8 PkgEval terminated after 2732.02s: test duration exceeded the time limit