Package evaluation of VariantCallFormat on Julia 1.13.0-DEV.897 (a39797a4fb*) started at 2025-07-24T13:01:43.447


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# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.58s


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# Installation
#

Installing VariantCallFormat...
   Resolving package versions...
    Updating `~/.julia/environments/v1.13/Project.toml`
  [28eba6e3] + VariantCallFormat v0.5.6
    Updating `~/.julia/environments/v1.13/Manifest.toml`
⌅ [67c07d97] + Automa v0.8.4
  [28d598bf] + BGZFStreams v0.3.2
  [47718e42] + BioGenerics v0.1.5
  [e1450e63] + BufferedStreams v1.2.2
  [944b1d66] + CodecZlib v0.7.8
⌅ [3bb67fe8] + TranscodingStreams v0.9.13
  [28eba6e3] + VariantCallFormat v0.5.6
  [2a0f44e3] + Base64 v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [8f399da3] + Libdl v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [f489334b] + StyledStrings v1.11.0
  [8dfed614] + Test v1.11.0
  [83775a58] + Zlib_jll v1.3.1+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 1.17s


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# Precompilation
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Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 33.54s


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# Testing
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     Testing VariantCallFormat
      Status `/tmp/jl_DcgReB/Project.toml`
⌅ [67c07d97] Automa v0.8.4
  [28d598bf] BGZFStreams v0.3.2
  [47718e42] BioGenerics v0.1.5
  [e1450e63] BufferedStreams v1.2.2
  [28eba6e3] VariantCallFormat v0.5.6
  [ddb6d928] YAML v0.4.14
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_DcgReB/Manifest.toml`
⌅ [67c07d97] Automa v0.8.4
  [28d598bf] BGZFStreams v0.3.2
  [47718e42] BioGenerics v0.1.5
  [e1450e63] BufferedStreams v1.2.2
  [944b1d66] CodecZlib v0.7.8
  [692b3bcd] JLLWrappers v1.7.1
  [21216c6a] Preferences v1.4.3
  [69024149] StringEncodings v0.3.7
⌅ [3bb67fe8] TranscodingStreams v0.9.13
  [28eba6e3] VariantCallFormat v0.5.6
  [ddb6d928] YAML v0.4.14
  [94ce4f54] Libiconv_jll v1.18.0+0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [8f399da3] Libdl v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [83775a58] Zlib_jll v1.3.1+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...

VCF: Test Failed at /home/pkgeval/.julia/packages/VariantCallFormat/YgfJC/test/vcf.jl:97
  Expression: VCF.infokeys(record) == ["DP", "AA", "DB"]
   Evaluated: ["DB", "DP", "AA"] == ["DP", "AA", "DB"]
  Stacktrace:
   [1] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:741 [inlined]
   [2] macro expansion
     @ ~/.julia/packages/VariantCallFormat/YgfJC/test/vcf.jl:97 [inlined]
   [3] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined]
   [4] top-level scope
     @ ~/.julia/packages/VariantCallFormat/YgfJC/test/vcf.jl:2
Test Summary: | Pass  Fail  Total   Time
VCF           |  194     1    195  42.1s
RNG of the outermost testset: Random.Xoshiro(0xeb59bdc3daba1a1d, 0xb5b4d97c45839e79, 0xd458ec44a58c7e43, 0x1cf16a8ae55747e1, 0xfcced15c2c6663fe)
ERROR: LoadError: Some tests did not pass: 194 passed, 1 failed, 0 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/VariantCallFormat/YgfJC/test/vcf.jl:1
in expression starting at /home/pkgeval/.julia/packages/VariantCallFormat/YgfJC/test/runtests.jl:1

Testing failed after 57.9s

ERROR: LoadError: Package VariantCallFormat errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2661
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2510 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538
  [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined]
  [8] #test#81
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:311
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:320
 [12] _start()
    @ Base ./client.jl:553
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 118.05s: package has test failures