Package evaluation of Stheno on Julia 1.13.0-DEV.897 (a39797a4fb*) started at 2025-07-24T17:35:43.532 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.85s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.2 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.25.2 [34da2185] + Compat v4.17.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.55s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 99.61s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_LtbZlm/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.32 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_LtbZlm/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.2 [a9b6321e] Atomix v1.1.1 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.25.2 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.17.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.3 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.38 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.2 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.4.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.14 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.37+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 9006.4 ms ✓ Documenter 1 dependency successfully precompiled in 9 seconds. 29 already precompiled. Precompiling packages... 2987.5 ms ✓ FiniteDifferences 1 dependency successfully precompiled in 3 seconds. 18 already precompiled. Precompiling packages... 1645.7 ms ✓ StructArrays → StructArraysStaticArraysExt 12615.5 ms ✓ ChainRules 7637.1 ms ✓ KernelAbstractions 4143.8 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 3278.9 ms ✓ KernelAbstractions → SparseArraysExt 3074.6 ms ✓ KernelAbstractions → LinearAlgebraExt 2826.6 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 15132.1 ms ✓ GPUArrays 65462.3 ms ✓ Zygote 9 dependencies successfully precompiled in 117 seconds. 96 already precompiled. Precompiling packages... 9287.4 ms ✓ Zygote → ZygoteDistancesExt 1 dependency successfully precompiled in 10 seconds. 109 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#284` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 19m08.4s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1167s / 98.3% 28.9GiB / 99.3% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 737s 64.2% 737s 20.2GiB 70.2% 20.2GiB addition 1 414s 36.1% 414s 11.7GiB 40.8% 11.7GiB Standardised Tests (correlated sum) 1 228s 19.9% 228s 6.39GiB 22.2% 6.39GiB adj_ad 9 25.1s 2.2% 2.79s 1.01GiB 3.5% 115MiB adj_fd 9 8.94s 0.8% 993ms 311MiB 1.1% 34.6MiB Standardised Tests (independent sum) 1 137s 11.9% 137s 5.03GiB 17.5% 5.03GiB adj_ad 9 26.8s 2.3% 2.98s 1.22GiB 4.2% 139MiB adj_fd 9 10.4s 0.9% 1.15s 295MiB 1.0% 32.8MiB Correlated GPs 1 45.6s 4.0% 45.6s 278MiB 0.9% 278MiB Consistency Tests 1 19.3s 1.7% 19.3s 122MiB 0.4% 122MiB Verify mean / kernel numerically 1 3.09s 0.3% 3.09s 41.4MiB 0.1% 41.4MiB Consistency Tests 1 1.87s 0.2% 1.87s 14.3MiB 0.0% 14.3MiB product 1 152s 13.2% 152s 3.90GiB 13.6% 3.90GiB multiply by function 1 91.4s 8.0% 91.4s 2.08GiB 7.2% 2.08GiB Diff Tests 1 50.4s 4.4% 50.4s 1.57GiB 5.5% 1.57GiB adj_ad 9 19.6s 1.7% 2.17s 864MiB 2.9% 96.0MiB adj_fd 9 5.84s 0.5% 649ms 110MiB 0.4% 12.2MiB Consistency Tests 1 6.58s 0.6% 6.58s 103MiB 0.4% 103MiB multiply by constant 1 60.5s 5.3% 60.5s 1.82GiB 6.3% 1.82GiB Diff Tests 1 46.6s 4.1% 46.6s 1.77GiB 6.2% 1.77GiB adj_ad 9 14.9s 1.3% 1.66s 790MiB 2.7% 87.8MiB adj_fd 9 10.7s 0.9% 1.19s 289MiB 1.0% 32.1MiB Consistency Tests 1 3.31s 0.3% 3.31s 19.5MiB 0.1% 19.5MiB GP mul errors 1 11.6ms 0.0% 11.6ms 40.0KiB 0.0% 40.0KiB compose 1 81.2s 7.1% 81.2s 2.32GiB 8.1% 2.32GiB general 1 49.6s 4.3% 49.6s 1.49GiB 5.2% 1.49GiB Diff Tests 1 43.2s 3.8% 43.2s 1.44GiB 5.0% 1.44GiB adj_ad 9 13.3s 1.2% 1.48s 700MiB 2.4% 77.7MiB adj_fd 9 5.37s 0.5% 597ms 109MiB 0.4% 12.1MiB Consistency Tests 1 5.01s 0.4% 5.01s 38.2MiB 0.1% 38.2MiB Stretch 1 25.7s 2.2% 25.7s 745MiB 2.5% 745MiB scalar stretch 1 25.0s 2.2% 25.0s 733MiB 2.5% 733MiB scalar input 1 24.1s 2.1% 24.1s 729MiB 2.5% 729MiB adj_fd 9 8.73s 0.8% 970ms 277MiB 0.9% 30.8MiB adj_ad 9 3.07s 0.3% 341ms 139MiB 0.5% 15.5MiB vector input 1 816ms 0.1% 816ms 3.19MiB 0.0% 3.19MiB Vector stretch 1 646ms 0.1% 646ms 9.78MiB 0.0% 9.78MiB Matrix stretch 1 135ms 0.0% 135ms 2.96MiB 0.0% 2.96MiB Shift 1 3.12s 0.3% 3.12s 39.4MiB 0.1% 39.4MiB Shift{Vector{Float64}} 1 1.74s 0.2% 1.74s 14.1MiB 0.0% 14.1MiB Shift{Float64} 1 1.38s 0.1% 1.38s 25.2MiB 0.1% 25.2MiB Select 1 1.62s 0.1% 1.62s 31.8MiB 0.1% 31.8MiB evaluation 1 730ms 0.1% 730ms 20.2MiB 0.1% 20.2MiB idx isa Vector 1 522ms 0.0% 522ms 7.68MiB 0.0% 7.68MiB idx isa Integer 1 366ms 0.0% 366ms 3.88MiB 0.0% 3.88MiB Periodic 1 1.19s 0.1% 1.19s 33.1MiB 0.1% 33.1MiB cross 1 30.5s 2.7% 30.5s 1.36GiB 4.7% 1.36GiB block arrays 1 16.3s 1.4% 16.3s 768MiB 2.6% 768MiB Stheno._collect ∘ _mortar 1 13.7s 1.2% 13.7s 659MiB 2.2% 659MiB BlockMatrix 1 7.35s 0.6% 7.35s 365MiB 1.2% 365MiB adj_fd 1 952ms 0.1% 952ms 111MiB 0.4% 111MiB adj_ad 1 53.7ms 0.0% 53.7ms 2.35MiB 0.0% 2.35MiB BlockVector 1 6.36s 0.6% 6.36s 294MiB 1.0% 294MiB adj_fd 1 775ms 0.1% 775ms 12.3MiB 0.0% 12.3MiB adj_ad 1 205ms 0.0% 205ms 15.6MiB 0.1% 15.6MiB fdm stuff 1 2.56s 0.2% 2.56s 109MiB 0.4% 109MiB Correctness tests 1 8.02s 0.7% 8.02s 393MiB 1.3% 393MiB Standardised Tests 1 6.16s 0.5% 6.16s 233MiB 0.8% 233MiB gp 1 194s 16.9% 194s 4.36GiB 15.2% 4.36GiB sparse gp 1 20.7s 1.8% 20.7s 380MiB 1.3% 380MiB SparseFiniteGP inference 1 15.6s 1.4% 15.6s 267MiB 0.9% 267MiB SparseFiniteGP methods 1 4.66s 0.4% 4.66s 108MiB 0.4% 108MiB SparseFiniteGP Constructors 1 373ms 0.0% 373ms 4.08MiB 0.0% 4.08MiB adj_ad 2 20.2s 1.8% 10.1s 816MiB 2.8% 408MiB gp 1 15.7s 1.4% 15.7s 256MiB 0.9% 256MiB GP 1 15.4s 1.3% 15.4s 253MiB 0.9% 253MiB independent GPs 1 295ms 0.0% 295ms 2.60MiB 0.0% 2.60MiB wrapped AbstractGP 1 11.3ms 0.0% 11.3ms 286KiB 0.0% 286KiB adj_fd 2 2.55s 0.2% 1.28s 41.0MiB 0.1% 20.5MiB derived_gp 1 139μs 0.0% 139μs 1.59KiB 0.0% 1.59KiB gaussian_process_probabilistic_programme 1 141s 12.3% 141s 2.26GiB 7.9% 2.26GiB Zygote 1 26.3s 2.3% 26.3s 0.96GiB 3.3% 0.96GiB nested gppp 1 15.1s 1.3% 15.1s 89.1MiB 0.3% 89.1MiB External Consistency 1 14.0s 1.2% 14.0s 93.1MiB 0.3% 93.1MiB split 1 596ms 0.1% 596ms 11.6MiB 0.0% 11.6MiB gppp macro 1 55.8ms 0.0% 55.8ms 567KiB 0.0% 567KiB doctests 1 69.0s 6.0% 69.0s 1.70GiB 5.9% 1.70GiB BlockData 1 7.16s 0.6% 7.16s 259MiB 0.9% 259MiB vcat(::GPPPInput...) 1 2.21s 0.2% 2.21s 98.2MiB 0.3% 98.2MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1324.78s PkgEval succeeded after 1457.72s