Package evaluation of OnlinePCA on Julia 1.13.0-DEV.897 (a39797a4fb*) started at 2025-07-25T00:27:50.931 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.87s ################################################################################ # Installation # Installing OnlinePCA... Resolving package versions... Installed Rmath_jll ─────────────────── v0.5.1+0 Installed FilePathsBase ─────────────── v0.9.24 Installed URIs ──────────────────────── v1.6.1 Installed CodecZstd ─────────────────── v0.8.6 Installed MacroTools ────────────────── v0.5.16 Installed GLM ───────────────────────── v1.9.0 Installed DataStructures ────────────── v0.18.22 Installed FillArrays ────────────────── v1.13.0 Installed InlineStrings ─────────────── v1.4.4 Installed libaec_jll ────────────────── v1.1.3+0 Installed MPICH_jll ─────────────────── v4.3.1+0 Installed StatsModels ───────────────── v0.7.4 Installed Mux ───────────────────────── v1.0.2 Installed HypergeometricFunctions ───── v0.3.28 Installed DelimitedFiles ────────────── v1.9.1 Installed CodecZlib ─────────────────── v0.7.8 Installed ConcurrentUtilities ───────── v2.5.0 Installed AliasTables ───────────────── v1.1.3 Installed Observables ───────────────── v0.5.5 Installed StatsBase ─────────────────── v0.34.5 Installed TranscodingStreams ────────── v0.11.3 Installed ExceptionUnwrapping ───────── v0.1.11 Installed MicrosoftMPI_jll ──────────── v10.1.4+3 Installed OrderedCollections ────────── v1.8.1 Installed Compat ────────────────────── v4.17.0 Installed ShiftedArrays ─────────────── v2.0.0 Installed Kaleido_jll ───────────────── v0.2.1+0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed TensorCore ────────────────── v0.1.1 Installed DataAPI ───────────────────── v1.16.0 Installed Statistics ────────────────── v1.11.1 Installed InvertedIndices ───────────── v1.3.1 Installed WebSockets ────────────────── v1.6.0 Installed StatsAPI ──────────────────── v1.7.1 Installed FunctionalCollections ─────── v0.5.0 Installed PrecompileTools ───────────── v1.3.2 Installed Colors ────────────────────── v0.13.1 Installed DataValueInterfaces ───────── v1.0.0 Installed Hiccup ────────────────────── v0.2.2 Installed ProgressMeter ─────────────── v1.10.4 Installed SentinelArrays ────────────── v1.4.8 Installed MbedTLS ───────────────────── v1.1.9 Installed LoggingExtras ─────────────── v1.1.0 Installed OpenSSL ───────────────────── v1.5.0 Installed TextWrap ──────────────────── v1.0.2 Installed IrrationalConstants ───────── v0.2.4 Installed AssetRegistry ─────────────── v0.1.0 Installed QuadGK ────────────────────── v2.11.2 Installed StringManipulation ────────── v0.4.1 Installed ColorTypes ────────────────── v0.12.1 Installed Widgets ───────────────────── v0.6.7 Installed Requires ──────────────────── v1.3.1 Installed OnlinePCA ─────────────────── v0.3.10 Installed ColorVectorSpace ──────────── v0.11.0 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Pidfile ───────────────────── v1.3.0 Installed CSV ───────────────────────── v0.10.15 Installed HDF5_jll ──────────────────── v1.14.6+0 Installed LogExpFunctions ───────────── v0.3.29 Installed HTTP ──────────────────────── v1.10.17 Installed ArgParse ──────────────────── v1.2.0 Installed PrettyTables ──────────────── v2.4.0 Installed BitFlags ──────────────────── v0.1.9 Installed OpenMPI_jll ───────────────── v5.0.8+0 Installed Hwloc_jll ─────────────────── v2.12.1+0 Installed Rmath ─────────────────────── v0.8.0 Installed MatrixMarket ──────────────── v0.5.2 Installed JSON ──────────────────────── v0.21.4 Installed Parsers ───────────────────── v2.8.3 Installed Distributions ─────────────── v0.25.120 Installed Parameters ────────────────── v0.12.3 Installed Tables ────────────────────── v1.12.1 Installed StatsFuns ─────────────────── v1.5.0 Installed PtrArrays ─────────────────── v1.3.0 Installed WebIO ─────────────────────── v0.8.21 Installed Reexport ──────────────────── v1.2.2 Installed DataFrames ────────────────── v1.7.0 Installed SpecialFunctions ──────────── v2.5.1 Installed PlotlyKaleido ─────────────── v2.3.0 Installed PlotlyBase ────────────────── v0.8.21 Installed Blink ─────────────────────── v0.12.9 Installed Preferences ───────────────── v1.4.3 Installed FixedPointNumbers ─────────── v0.8.5 Installed SimpleBufferStream ────────── v1.2.0 Installed Missings ──────────────────── v1.2.0 Installed MPIPreferences ────────────── v0.1.11 Installed PooledArrays ──────────────── v1.4.3 Installed WeakRefStrings ────────────── v1.4.2 Installed JLLWrappers ───────────────── v1.7.1 Installed TableTraits ───────────────── v1.0.1 Installed JSExpr ────────────────────── v0.5.4 Installed LaTeXStrings ──────────────── v1.4.0 Installed SortingAlgorithms ─────────── v1.2.1 Installed MbedTLS_jll ───────────────── v2.28.6+2 Installed Mustache ──────────────────── v1.0.21 Installed PDMats ────────────────────── v0.11.35 Installed MPItrampoline_jll ─────────── v5.5.4+0 Installed Crayons ───────────────────── v4.1.1 Installed HDF5 ──────────────────────── v0.17.2 Installed Lazy ──────────────────────── v0.15.1 Installed UnPack ────────────────────── v1.0.2 Installed WorkerUtilities ───────────── v1.6.1 Installed DocStringExtensions ───────── v0.9.5 Installed ColorSchemes ──────────────── v3.30.0 Installed PlotlyJS ──────────────────── v0.18.16 Installing 14 artifacts Installed artifact libaec 96.2 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 121.9 KiB Installed artifact mathjax 18.7 KiB Installed artifact plotly-artifacts 1.4 MiB Installed artifact Hwloc 3.5 MiB Installed artifact MPICH 3.3 MiB Installed artifact plotly 2.3 MiB Installed artifact plotly-base-artifacts 430.0 KiB Installed artifact MbedTLS 2.1 MiB Installed artifact web 215.6 KiB Installed artifact HDF5 5.7 MiB Installed artifact electronjs_app 79.1 MiB Installed artifact Kaleido 75.3 MiB Updating `~/.julia/environments/v1.13/Project.toml` [975b03d1] + OnlinePCA v0.3.10 Updating `~/.julia/environments/v1.13/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [c7e460c6] + ArgParse v1.2.0 [bf4720bc] + AssetRegistry v0.1.0 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [35d6a980] + ColorSchemes v3.30.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.17.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [38e38edf] + GLM v1.9.0 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.17 [9fb69e20] + Hiccup v0.2.2 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.4 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [97c1335a] + JSExpr v0.5.4 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [4d4711f2] + MatrixMarket v0.5.2 [739be429] + MbedTLS v1.1.9 [e1d29d7a] + Missings v1.2.0 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [510215fc] + Observables v0.5.5 [975b03d1] + OnlinePCA v0.3.10 [4d8831e6] + OpenSSL v1.5.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.21 [f0f68f2c] + PlotlyJS v0.18.16 [f2990250] + PlotlyKaleido v2.3.0 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [b718987f] + TextWrap v1.0.2 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [f7e6163d] + Kaleido_jll v0.2.1+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [c8ffd9c3] + MbedTLS_jll v2.28.6+2 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [477f73a3] + libaec_jll v1.1.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.14.1+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Building WebIO ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0eef0765186f7452e52236fa42ca8c9b3c11c6e3/build.log` Building PlotlyJS → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b816b0f301b074e002476159a9ada5691eebaf61/build.log` Installation completed after 85.4s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4596.9 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 26 already precompiled. Precompiling package dependencies... Precompilation completed after 588.0s ################################################################################ # Testing # Testing OnlinePCA Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_EjSg4Z/Project.toml` [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.120 [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.13.0 [975b03d1] + OnlinePCA v0.3.10 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [37e2e46d] ~ LinearAlgebra ⇒ v1.13.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.13.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_EjSg4Z/Manifest.toml` [bf4720bc] + AssetRegistry v0.1.0 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.15 [944b1d66] ↑ CodecZlib v0.7.6 ⇒ v0.7.8 [6b39b394] + CodecZstd v0.8.6 [35d6a980] + ColorSchemes v3.30.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] ↑ Compat v4.16.0 ⇒ v4.17.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [a93c6f00] + DataFrames v1.7.0 [864edb3b] ↑ DataStructures v0.18.20 ⇒ v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.120 [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [38e38edf] + GLM v1.9.0 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.17 [9fb69e20] + Hiccup v0.2.2 [34004b35] ↑ HypergeometricFunctions v0.3.24 ⇒ v0.3.28 [842dd82b] + InlineStrings v1.4.4 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] ↑ JLLWrappers v1.5.0 ⇒ v1.7.1 [97c1335a] + JSExpr v0.5.4 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] ↑ LogExpFunctions v0.3.28 ⇒ v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.9 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [510215fc] + Observables v0.5.5 [975b03d1] + OnlinePCA v0.3.10 [4d8831e6] + OpenSSL v1.5.0 [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.1 [90014a1f] ↑ PDMats v0.11.31 ⇒ v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.21 [f0f68f2c] + PlotlyJS v0.18.16 [f2990250] + PlotlyKaleido v2.3.0 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] ↑ PtrArrays v1.2.0 ⇒ v1.3.0 [1fd47b50] ↑ QuadGK v2.10.1 ⇒ v2.11.2 [ae029012] + Requires v1.3.1 [79098fc4] ↑ Rmath v0.7.1 ⇒ v0.8.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [276daf66] ↑ SpecialFunctions v2.4.0 ⇒ v2.5.1 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [82ae8749] ↑ StatsAPI v1.7.0 ⇒ v1.7.1 [2913bbd2] ↑ StatsBase v0.34.3 ⇒ v0.34.5 [4c63d2b9] ↑ StatsFuns v1.3.1 ⇒ v1.5.0 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] ↑ TranscodingStreams v0.11.2 ⇒ v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [f7e6163d] + Kaleido_jll v0.2.1+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [c8ffd9c3] ↑ MbedTLS_jll v2.28.2+1 ⇒ v2.28.6+2 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [f50d1b31] ↑ Rmath_jll v0.4.3+0 ⇒ v0.5.1+0 [477f73a3] + libaec_jll v1.1.3+0 [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.13.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0 [44cfe95a] ↑ Pkg v1.10.0 ⇒ v1.13.0 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] ~ REPL ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.13.0 [f489334b] + StyledStrings v1.11.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.3.0+1 [deac9b47] ↑ LibCURL_jll v8.4.0+0 ⇒ v8.14.1+1 [e37daf67] ↑ LibGit2_jll v1.6.4+0 ⇒ v1.9.1+0 [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1 [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2025.7.15 [4536629a] ↑ OpenBLAS_jll v0.3.23+4 ⇒ v0.3.29+0 [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.10.1+0 [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.13.1+0 [8e850ede] ↑ nghttp2_jll v1.52.0+1 ⇒ v1.65.0+0 [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.5.0+2 Test Successfully re-resolved Status `/tmp/jl_EjSg4Z/Project.toml` [c7e460c6] ArgParse v1.2.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.120 [1a297f60] FillArrays v1.13.0 [4d4711f2] MatrixMarket v0.5.2 [975b03d1] OnlinePCA v0.3.10 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_EjSg4Z/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [c7e460c6] ArgParse v1.2.0 [bf4720bc] AssetRegistry v0.1.0 [d1d4a3ce] BitFlags v0.1.9 [ad839575] Blink v0.12.9 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.6 [35d6a980] ColorSchemes v3.30.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [34da2185] Compat v4.17.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [53c48c17] FixedPointNumbers v0.8.5 [de31a74c] FunctionalCollections v0.5.0 [38e38edf] GLM v1.9.0 [f67ccb44] HDF5 v0.17.2 [cd3eb016] HTTP v1.10.17 [9fb69e20] Hiccup v0.2.2 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.4 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [97c1335a] JSExpr v0.5.4 [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [50d2b5c4] Lazy v0.15.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [4d4711f2] MatrixMarket v0.5.2 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [ffc61752] Mustache v1.0.21 [a975b10e] Mux v1.0.2 [510215fc] Observables v0.5.5 [975b03d1] OnlinePCA v0.3.10 [4d8831e6] OpenSSL v1.5.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [a03496cd] PlotlyBase v0.8.21 [f0f68f2c] PlotlyJS v0.18.16 [f2990250] PlotlyKaleido v2.3.0 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [3eaba693] StatsModels v0.7.4 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [b718987f] TextWrap v1.0.2 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.2 [0f1e0344] WebIO v0.8.21 [104b5d7c] WebSockets v1.6.0 [cc8bc4a8] Widgets v0.6.7 [76eceee3] WorkerUtilities v1.6.1 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.1+0 [f7e6163d] Kaleido_jll v0.2.1+0 [7cb0a576] MPICH_jll v4.3.1+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [c8ffd9c3] MbedTLS_jll v2.28.6+2 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.8+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [477f73a3] libaec_jll v1.1.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Testing Running tests... /tmp/jl_dsLLUK Running all tests... ####### Binarization of CSV (Julia API) ####### 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 ####### Binarization of CSV (Command line) ####### Precompiling packages... 1563.8 ms ✓ DocStringExtensions 869.9 ms ✓ DataValueInterfaces 3789.3 ms ✓ IrrationalConstants 923.3 ms ✓ BitFlags 952.4 ms ✓ TensorCore 918.7 ms ✓ LaTeXStrings 856.5 ms ✓ UnPack 1089.3 ms ✓ Observables 1064.8 ms ✓ WorkerUtilities 2055.7 ms ✓ Requires 1179.5 ms ✓ Statistics 920.4 ms ✓ DataAPI 1747.6 ms ✓ InlineStrings 910.5 ms ✓ InvertedIndices 884.5 ms ✓ StatsAPI 968.6 ms ✓ TextWrap 7729.3 ms ✓ MacroTools 1333.5 ms ✓ OrderedCollections 849.7 ms ✓ IteratorInterfaceExtensions 5114.9 ms ✓ Crayons 897.3 ms ✓ SimpleBufferStream 1996.8 ms ✓ FillArrays 1057.2 ms ✓ DelimitedFiles 953.2 ms ✓ ShiftedArrays 1290.2 ms ✓ TranscodingStreams 924.6 ms ✓ PtrArrays 866.6 ms ✓ Reexport 1375.6 ms ✓ URIs 1825.4 ms ✓ ConcurrentUtilities 1293.0 ms ✓ SuiteSparse 1918.7 ms ✓ ProgressMeter 6247.6 ms ✓ SentinelArrays 1185.7 ms ✓ LoggingExtras 4026.2 ms ✓ Preferences 1224.0 ms ✓ Compat 1080.0 ms ✓ Pidfile 1597.2 ms ✓ FunctionalCollections 2442.3 ms ✓ ExceptionUnwrapping 1865.7 ms ✓ LogExpFunctions 6772.2 ms ✓ OpenSSL 1358.3 ms ✓ Statistics → SparseArraysExt 7843.9 ms ✓ FixedPointNumbers 839.2 ms ✓ Missings 831.7 ms ✓ PooledArrays 1623.6 ms ✓ ArgParse 5604.2 ms ✓ Lazy 1493.0 ms ✓ Hiccup 989.8 ms ✓ Parameters 820.2 ms ✓ TableTraits 967.5 ms ✓ FillArrays → FillArraysStatisticsExt 1544.8 ms ✓ FillArrays → FillArraysSparseArraysExt 2565.9 ms ✓ CodecZstd 1826.2 ms ✓ CodecZlib 1524.8 ms ✓ AliasTables 2348.5 ms ✓ PDMats 1837.8 ms ✓ MPIPreferences 1487.5 ms ✓ PrecompileTools 1595.3 ms ✓ JLLWrappers 1161.0 ms ✓ Compat → CompatLinearAlgebraExt 2638.4 ms ✓ ColorTypes 1522.6 ms ✓ Tables 1204.9 ms ✓ MatrixMarket 1430.7 ms ✓ FillArrays → FillArraysPDMatsExt 6263.4 ms ✓ StringManipulation 44249.2 ms ✓ Parsers 1265.9 ms ✓ MicrosoftMPI_jll 1796.6 ms ✓ OpenSpecFun_jll 1704.3 ms ✓ libaec_jll 1532.7 ms ✓ Rmath_jll 1778.5 ms ✓ Hwloc_jll 5050.5 ms ✓ MPItrampoline_jll 1728.8 ms ✓ MbedTLS_jll 1481.6 ms ✓ Kaleido_jll 2603.7 ms ✓ FilePathsBase 4328.0 ms ✓ DataStructures 14540.7 ms ✓ Colors 6019.1 ms ✓ ColorVectorSpace 1380.7 ms ✓ ColorTypes → StyledStringsExt 1313.4 ms ✓ Mustache 64801.5 ms ✓ PrettyTables 4822.0 ms ✓ JSON 1050.7 ms ✓ InlineStrings → ParsersExt 5897.1 ms ✓ SpecialFunctions 1875.7 ms ✓ Rmath 6126.9 ms ✓ MPICH_jll 5149.5 ms ✓ OpenMPI_jll 3363.3 ms ✓ MbedTLS 1455.3 ms ✓ FilePathsBase → FilePathsBaseMmapExt 3305.3 ms ✓ FilePathsBase → FilePathsBaseTestExt 3061.1 ms ✓ QuadGK 1901.1 ms ✓ SortingAlgorithms 1779.6 ms ✓ Widgets 9572.1 ms ✓ ColorSchemes 1676.4 ms ✓ PlotlyKaleido 1478.1 ms ✓ AssetRegistry 3063.3 ms ✓ WeakRefStrings 2667.8 ms ✓ HypergeometricFunctions 1551.4 ms ✓ ColorVectorSpace → SpecialFunctionsExt 7998.0 ms ✓ HDF5_jll 61619.2 ms ✓ HTTP 6061.8 ms ✓ StatsBase 204799.9 ms ✓ DataFrames 13228.4 ms ✓ PlotlyBase 68721.3 ms ✓ CSV 4593.5 ms ✓ StatsFuns 23880.7 ms ✓ HDF5 4250.1 ms ✓ WebSockets 7675.5 ms ✓ Mux 13320.8 ms ✓ PlotlyBase → DataFramesExt 5043.6 ms ✓ StatsModels 10648.0 ms ✓ Distributions 8905.4 ms ✓ WebIO 3706.9 ms ✓ Distributions → DistributionsTestExt 5318.8 ms ✓ GLM 8322.9 ms ✓ PlotlyBase → DistributionsExt 7081.9 ms ✓ JSExpr 11536.1 ms ✓ Blink 19655.9 ms ✓ PlotlyJS 10933.9 ms ✓ PlotlyJS → CSVExt 17664.2 ms ✓ PlotlyJS → DataFramesExt 17113.1 ms ✓ OnlinePCA 121 dependencies successfully precompiled in 886 seconds. 39 already precompiled. 3 dependencies had output during precompilation: ┌ HTTP │ ┌ Info: Ignoring an error that occurred during the precompilation workload │ │ exception = │ │ HTTP.ConnectError for url = `https://localhost:57813`: IOError: connect: connection refused (ECONNREFUSED) │ │ Stacktrace: │ │ [1] getconnection(::Type{Sockets.TCPSocket}, host::SubString{String}, port::SubString{String}; keepalive::Bool, readtimeout::Int64, kw::@Kwargs{require_ssl_verification::Bool, iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.Connections ~/.julia/packages/HTTP/JcAHX/src/Connections.jl:531 │ │ [2] getconnection │ │ @ ~/.julia/packages/HTTP/JcAHX/src/Connections.jl:508 [inlined] │ │ [3] getconnection(::Type{OpenSSL.SSLStream}, host::SubString{String}, port::SubString{String}; kw::@Kwargs{require_ssl_verification::Bool, keepalive::Bool, readtimeout::Int64, iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.Connections ~/.julia/packages/HTTP/JcAHX/src/Connections.jl:585 │ │ [4] getconnection │ │ @ ~/.julia/packages/HTTP/JcAHX/src/Connections.jl:578 [inlined] │ │ [5] #13 │ │ @ ~/.julia/packages/HTTP/JcAHX/src/Connections.jl:467 [inlined] │ │ [6] macro expansion │ │ @ ~/.julia/packages/ConcurrentUtilities/ofY4K/src/try_with_timeout.jl:92 [inlined] │ │ [7] (::ConcurrentUtilities.var"#try_with_timeout##2#try_with_timeout##3"{Any, Channel{Any}, HTTP.Connections.var"#13#14"{OpenSSL.SSLStream, Bool, Bool, @Kwargs{readtimeout::Int64, iofunction::Nothing, decompress::Nothing, verbose::Int64}, SubString{String}, SubString{String}}, Timer})() │ │ @ ConcurrentUtilities ~/.julia/packages/ConcurrentUtilities/ofY4K/src/ConcurrentUtilities.jl:10 │ │ Stacktrace: │ │ [1] (::HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}})(req::HTTP.Messages.Request; proxy::Nothing, socket_type::Type, socket_type_tls::Nothing, readtimeout::Int64, connect_timeout::Int64, logerrors::Bool, logtag::Nothing, closeimmediately::Bool, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.ConnectionRequest ~/.julia/packages/HTTP/JcAHX/src/clientlayers/ConnectionRequest.jl:88 │ │ [2] connections │ │ @ ~/.julia/packages/HTTP/JcAHX/src/clientlayers/ConnectionRequest.jl:60 [inlined] │ │ [3] (::Base.var"#46#47"{Base.var"#48#49"{ExponentialBackOff, HTTP.RetryRequest.var"#retrylayer##2#retrylayer##3"{Int64, typeof(HTTP.RetryRequest.FALSE), HTTP.Messages.Request, Base.RefValue{Int64}}, HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}})(args::HTTP.Messages.Request; kwargs::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ Base ./error.jl:323 │ │ [4] (::HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}})(req::HTTP.Messages.Request; retry::Bool, retries::Int64, retry_delays::ExponentialBackOff, retry_check::Function, retry_non_idempotent::Bool, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.RetryRequest ~/.julia/packages/HTTP/JcAHX/src/clientlayers/RetryRequest.jl:75 │ │ [5] manageretries │ │ @ ~/.julia/packages/HTTP/JcAHX/src/clientlayers/RetryRequest.jl:30 [inlined] │ │ [6] (::HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}})(req::HTTP.Messages.Request; cookies::Bool, cookiejar::HTTP.Cookies.CookieJar, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.CookieRequest ~/.julia/packages/HTTP/JcAHX/src/clientlayers/CookieRequest.jl:42 │ │ [7] managecookies │ │ @ ~/.julia/packages/HTTP/JcAHX/src/clientlayers/CookieRequest.jl:19 [inlined] │ │ [8] (::HTTP.HeadersRequest.var"#defaultheaders#headerslayer##0"{HTTP.HeadersRequest.var"#defaultheaders#1#headerslayer##1"{HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}})(req::HTTP.Messages.Request; iofunction::Nothing, decompress::Nothing, basicauth::Bool, detect_content_type::Bool, canonicalize_headers::Bool, kw::@Kwargs{verbose::Int64}) │ │ @ HTTP.HeadersRequest ~/.julia/packages/HTTP/JcAHX/src/clientlayers/HeadersRequest.jl:71 │ │ [9] defaultheaders │ │ @ ~/.julia/packages/HTTP/JcAHX/src/clientlayers/HeadersRequest.jl:14 [inlined] │ │ [10] (::HTTP.RedirectRequest.var"#redirects#redirectlayer##0"{HTTP.RedirectRequest.var"#redirects#1#redirectlayer##1"{HTTP.HeadersRequest.var"#defaultheaders#headerslayer##0"{HTTP.HeadersRequest.var"#defaultheaders#1#headerslayer##1"{HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}})(req::HTTP.Messages.Request; redirect::Bool, redirect_limit::Int64, redirect_method::Nothing, forwardheaders::Bool, response_stream::Nothing, kw::@Kwargs{verbose::Int64}) │ │ @ HTTP.RedirectRequest ~/.julia/packages/HTTP/JcAHX/src/clientlayers/RedirectRequest.jl:25 │ │ [11] redirects │ │ @ ~/.julia/packages/HTTP/JcAHX/src/clientlayers/RedirectRequest.jl:14 [inlined] │ │ [12] (::HTTP.MessageRequest.var"#makerequest#messagelayer##0"{HTTP.MessageRequest.var"#makerequest#1#messagelayer##1"{HTTP.RedirectRequest.var"#redirects#redirectlayer##0"{HTTP.RedirectRequest.var"#redirects#1#redirectlayer##1"{HTTP.HeadersRequest.var"#defaultheaders#headerslayer##0"{HTTP.HeadersRequest.var"#defaultheaders#1#headerslayer##1"{HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}}}})(method::String, url::URIs.URI, headers::Nothing, body::Vector{UInt8}; copyheaders::Bool, response_stream::Nothing, http_version::HTTP.Strings.HTTPVersion, verbose::Int64, kw::@Kwargs{}) │ │ @ HTTP.MessageRequest ~/.julia/packages/HTTP/JcAHX/src/clientlayers/MessageRequest.jl:35 │ │ [13] makerequest │ │ @ ~/.julia/packages/HTTP/JcAHX/src/clientlayers/MessageRequest.jl:24 [inlined] │ │ [14] request(stack::HTTP.MessageRequest.var"#makerequest#messagelayer##0"{HTTP.MessageRequest.var"#makerequest#1#messagelayer##1"{HTTP.RedirectRequest.var"#redirects#redirectlayer##0"{HTTP.RedirectRequest.var"#redirects#1#redirectlayer##1"{HTTP.HeadersRequest.var"#defaultheaders#headerslayer##0"{HTTP.HeadersRequest.var"#defaultheaders#1#headerslayer##1"{HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}}}}, method::String, url::String, h::Nothing, b::Vector{UInt8}, q::Nothing; headers::Nothing, body::Vector{UInt8}, query::Nothing, kw::@Kwargs{}) │ │ @ HTTP ~/.julia/packages/HTTP/JcAHX/src/HTTP.jl:457 │ │ [15] request(stack::Function, method::String, url::String, h::Nothing, b::Vector{UInt8}, q::Nothing) │ │ @ HTTP ~/.julia/packages/HTTP/JcAHX/src/HTTP.jl:455 │ │ [16] #request#21 │ │ @ ~/.julia/packages/HTTP/JcAHX/src/HTTP.jl:315 [inlined] │ │ [17] request (repeats 2 times) │ │ @ ~/.julia/packages/HTTP/JcAHX/src/HTTP.jl:313 [inlined] │ │ [18] get │ │ @ ~/.julia/packages/HTTP/JcAHX/src/HTTP.jl:518 [inlined] │ │ [19] #51 │ │ @ ~/.julia/packages/HTTP/JcAHX/src/precompile.jl:36 [inlined] │ │ [20] withenv(::HTTP.var"#51#52"{String}, ::Pair{String, Union{Nothing, String}}, ::Vararg{Pair{String, Union{Nothing, String}}}) │ │ @ Base ./env.jl:265 │ │ [21] macro expansion │ │ @ ~/.julia/packages/HTTP/JcAHX/src/precompile.jl:35 [inlined] │ │ [22] macro expansion │ │ @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] │ │ [23] macro expansion │ │ @ ~/.julia/packages/HTTP/JcAHX/src/precompile.jl:34 [inlined] │ │ [24] macro expansion │ │ @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] │ │ [25] top-level scope │ │ @ ~/.julia/packages/HTTP/JcAHX/src/precompile.jl:4 │ │ [26] include(mapexpr::Function, mod::Module, _path::String) │ │ @ Base ./Base.jl:312 │ │ [27] top-level scope │ │ @ ~/.julia/packages/HTTP/JcAHX/src/HTTP.jl:643 │ │ [28] include(mod::Module, _path::String) │ │ @ Base ./Base.jl:311 │ │ [29] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ │ @ Base ./loading.jl:3002 │ │ [30] top-level scope │ │ @ stdin:5 │ │ [31] eval(m::Module, e::Any) │ │ @ Core ./boot.jl:489 │ │ [32] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ │ @ Base ./loading.jl:2848 │ │ [33] include_string │ │ @ ./loading.jl:2858 [inlined] │ │ [34] exec_options(opts::Base.JLOptions) │ │ @ Base ./client.jl:318 │ │ [35] _start() │ └ @ Base ./client.jl:553 └ ┌ PlotlyBase → DistributionsExt │ WARNING: Constructor for type "Plot" was extended in `DistributionsExt` without explicit qualification or import. │ NOTE: Assumed "Plot" refers to `PlotlyBase.Plot`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Plot end`. │ Hint: To silence the warning, qualify `Plot` as `PlotlyBase.Plot` in the method signature or explicitly `import PlotlyBase: Plot`. └ ┌ WebSockets │ WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. │ WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. └ Parsed args: csvfile => /tmp/jl_dsLLUK/Data.csv binfile => /tmp/jl_dsLLUK/Data.zst 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 ####### Binarization of MM (Julia API) ####### ####### Binarization of MM (Command line) ####### Parsed args: binfile => /tmp/jl_dsLLUK/Data.mtx.zst mmfile => /tmp/jl_dsLLUK/Data.mtx ####### Binarization of Binary COO (Julia API) ####### ####### Binarization of Binary COO (Command line) ####### Parsed args: binfile => /tmp/jl_dsLLUK/Data.bincoo.zst bincoofile => /tmp/jl_dsLLUK/Data.bincoo ####### Summarization (Julia API) ####### 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: outdir => /tmp/jl_xxPfgZ binfile => /tmp/jl_dsLLUK/Data.zst pseudocount => 1.0 mode => dense 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Julia API) ####### 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: outdir => /tmp/jl_XTTXYc binfile => /tmp/jl_dsLLUK/Data.mtx.zst pseudocount => 1.0 mode => sparse_mm 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### HVG (Julia API) ####### Highly Variable Genes are calculated... ####### HVG (Command line) ####### Parsed args: rowcv2list => /tmp/jl_xxPfgZ/Feature_CV2s.csv outdir => /tmp/jl_xxPfgZ binfile => /tmp/jl_dsLLUK/Data.zst rowvarlist => /tmp/jl_xxPfgZ/Feature_Vars.csv rowmeanlist => /tmp/jl_xxPfgZ/Feature_Means.csv Highly Variable Genes are calculated... ####### Filtering (Julia API) ####### ####### Filtering (Command line) ####### Parsed args: input => /tmp/jl_dsLLUK/Data.zst direct1 => + outdir => /tmp/jl_xxPfgZ direct2 => + thr2 => 10 samplelist => /tmp/jl_xxPfgZ/Sample_NoCounts.csv featurelist => /tmp/jl_xxPfgZ/Feature_Means.csv thr1 => 10 Parsed args: input => /tmp/jl_dsLLUK/Data.zst direct1 => + outdir => /tmp/jl_xxPfgZ direct2 => + thr2 => 10 samplelist => featurelist => /tmp/jl_xxPfgZ/Feature_Means.csv thr1 => 10 Parsed args: input => /tmp/jl_dsLLUK/Data.zst direct1 => + outdir => /tmp/jl_xxPfgZ direct2 => + thr2 => 10 samplelist => /tmp/jl_xxPfgZ/Sample_NoCounts.csv featurelist => thr1 => 10 ####### GD (Julia API) ####### ####### GD (Command line) ####### Parsed args: scheduling => "robbins-monro" rowmeanlist => "/tmp/jl_xxPfgZ/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xxPfgZ" input => "/tmp/jl_dsLLUK/Data.zst" outdir => "/tmp/jl_xxPfgZ" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Parsed args: scheduling => "momentum" rowmeanlist => "/tmp/jl_xxPfgZ/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xxPfgZ" input => "/tmp/jl_dsLLUK/Data.zst" outdir => "/tmp/jl_xxPfgZ" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => "/tmp/jl_xxPfgZ/Eigen_vectors.csv" lower => 0 offsetStoch => 1.0f-6 Parsed args: scheduling => "nag" rowmeanlist => "/tmp/jl_xxPfgZ/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xxPfgZ" input => "/tmp/jl_dsLLUK/Data.zst" outdir => "/tmp/jl_xxPfgZ" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => "/tmp/jl_xxPfgZ/Loadings.csv" initW => nothing lower => 0 offsetStoch => 1.0f-6 Parsed args: scheduling => "adagrad" rowmeanlist => "/tmp/jl_xxPfgZ/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xxPfgZ" input => "/tmp/jl_dsLLUK/Data.zst" outdir => "/tmp/jl_xxPfgZ" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 ####### Oja (Julia API) ####### Progress: 1%|▎ | ETA: 0:02:42 Progress: 1%|▍ | ETA: 0:03:02 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:02:45 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:02:49 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:03:40 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### Oja (Command line) ####### Parsed args: scheduling => "robbins-monro" rowmeanlist => "/tmp/jl_xxPfgZ/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xxPfgZ" input => "/tmp/jl_dsLLUK/Data.zst" outdir => "/tmp/jl_xxPfgZ" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:05:59 Progress: 1%|▌ | ETA: 0:03:37 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Parsed args: scheduling => "momentum" rowmeanlist => "/tmp/jl_xxPfgZ/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xxPfgZ" input => "/tmp/jl_dsLLUK/Data.zst" outdir => "/tmp/jl_xxPfgZ" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:06:36 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Parsed args: scheduling => "nag" rowmeanlist => "/tmp/jl_xxPfgZ/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xxPfgZ" input => "/tmp/jl_dsLLUK/Data.zst" outdir => "/tmp/jl_xxPfgZ" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:09:05 Progress: 14%|█████▉ | ETA: 0:00:27 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 Parsed args: scheduling => "adagrad" rowmeanlist => "/tmp/jl_xxPfgZ/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xxPfgZ" input => "/tmp/jl_dsLLUK/Data.zst" outdir => "/tmp/jl_xxPfgZ" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:08:14 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 ####### SGD (Julia API) ####### Progress: 1%|▎ | ETA: 0:03:10 Progress: 1%|▍ | ETA: 0:03:57 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:04:11 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:04:28 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:04:31 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### SGD (Command line) ####### Parsed args: scheduling => "robbins-monro" rowmeanlist => "/tmp/jl_xxPfgZ/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xxPfgZ" input => "/tmp/jl_dsLLUK/Data.zst" outdir => "/tmp/jl_xxPfgZ" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:07:44 Progress: 1%|▍ | ETA: 0:06:10 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scheduling => "momentum" rowmeanlist => "/tmp/jl_xxPfgZ/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xxPfgZ" input => "/tmp/jl_dsLLUK/Data.zst" outdir => "/tmp/jl_xxPfgZ" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:07:18 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scheduling => "nag" rowmeanlist => "/tmp/jl_xxPfgZ/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xxPfgZ" input => "/tmp/jl_dsLLUK/Data.zst" outdir => "/tmp/jl_xxPfgZ" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:10:57 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 Parsed args: scheduling => "adagrad" rowmeanlist => "/tmp/jl_xxPfgZ/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xxPfgZ" input => "/tmp/jl_dsLLUK/Data.zst" outdir => "/tmp/jl_xxPfgZ" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:09:50 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 ####### CCIPCA (Julia API) ####### Progress: 1%|▎ | ETA: 0:02:07 Progress: 1%|▍ | ETA: 0:02:32 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### CCIPCA (Command line) ####### Parsed args: rowmeanlist => "/tmp/jl_xxPfgZ/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xxPfgZ" input => "/tmp/jl_dsLLUK/Data.zst" outdir => "/tmp/jl_xxPfgZ" pseudocount => 1.0f0 rowvarlist => "" colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-15 Progress: 1%|▎ | ETA: 0:08:18 Progress: 1%|▍ | ETA: 0:06:48 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 ####### RSGD (Julia API) ####### Progress: 1%|▎ | ETA: 0:15:17 Progress: 1%|▍ | ETA: 0:11:45 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 Progress: 1%|▎ | ETA: 0:04:12 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:05:21 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:04:39 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### RSGD (Command line) ####### Parsed args: scheduling => "robbins-monro" rowmeanlist => "/tmp/jl_xxPfgZ/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xxPfgZ" input => "/tmp/jl_dsLLUK/Data.zst" outdir => "/tmp/jl_xxPfgZ" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:14:01 Progress: 1%|▍ | ETA: 0:10:24 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scheduling => "momentum" rowmeanlist => "/tmp/jl_xxPfgZ/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xxPfgZ" input => "/tmp/jl_dsLLUK/Data.zst" outdir => "/tmp/jl_xxPfgZ" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:13:48 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 Parsed args: scheduling => "nag" rowmeanlist => "/tmp/jl_xxPfgZ/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xxPfgZ" input => "/tmp/jl_dsLLUK/Data.zst" outdir => "/tmp/jl_xxPfgZ" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:15:19 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scheduling => "adagrad" rowmeanlist => "/tmp/jl_xxPfgZ/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xxPfgZ" input => "/tmp/jl_dsLLUK/Data.zst" outdir => "/tmp/jl_xxPfgZ" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:16:30 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 ####### SVRG (Julia API) ####### Progress: 1%|▎ | ETA: 0:04:50 Progress: 1%|▍ | ETA: 0:05:47 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:06:25 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:09:24 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:08:13 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 ####### SVRG (Command line) ####### Parsed args: scheduling => "robbins-monro" rowmeanlist => "/tmp/jl_xxPfgZ/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xxPfgZ" input => "/tmp/jl_dsLLUK/Data.zst" outdir => "/tmp/jl_xxPfgZ" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:15:34 Progress: 1%|▍ | ETA: 0:12:17 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 Parsed args: scheduling => "momentum" rowmeanlist => "/tmp/jl_xxPfgZ/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xxPfgZ" input => "/tmp/jl_dsLLUK/Data.zst" outdir => "/tmp/jl_xxPfgZ" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1775 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm16MetadataTracking7untrackEPvRNS_8MetadataE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZNK4llvm14TargetLowering26SimplifyDemandedVectorEltsENS_7SDValueERKNS_5APIntERS2_S5_RNS0_17TargetLoweringOptEjb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_111DAGCombiner26SimplifyDemandedVectorEltsEN4llvm7SDValueERKNS1_5APIntEb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_111DAGCombiner26SimplifyDemandedVectorEltsEN4llvm7SDValueE.constprop.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_111DAGCombiner12visitVSELECTEPN4llvm6SDNodeE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_111DAGCombiner7combineEPN4llvm6SDNodeE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm12SelectionDAG7CombineENS_12CombineLevelEPNS_14BatchAAResultsENS_15CodeGenOptLevelE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm16SelectionDAGISel17CodeGenAndEmitDAGEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm16SelectionDAGISel20SelectAllBasicBlocksERKNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm16SelectionDAGISel20runOnMachineFunctionERNS_15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm22SelectionDAGISelLegacy20runOnMachineFunctionERNS_15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1613 addModule at /source/src/jitlayers.cpp:2094 jl_compile_codeinst_now at /source/src/jitlayers.cpp:685 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:876 jl_compile_method_internal at /source/src/gf.c:3527 _jl_invoke at /source/src/gf.c:4007 [inlined] ijl_apply_generic at /source/src/gf.c:4212 #svrg##0 at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/svrg.jl:110 #open#334 at ./io.jl:420 unknown function (ip: 0x738d6c885e48) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 open at ./io.jl:417 svrg at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/svrg.jl:89 unknown function (ip: 0x738d6c874ddd) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 #svrg#71 at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/svrg.jl:63 svrg at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/svrg.jl:47 unknown function (ip: 0x738d6c86535b) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 main at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/bin/svrg:120 unknown function (ip: 0x738d6c84ddef) at (unknown file) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2346 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 Progress: 1%|▎ | ETA: 0:12:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 eval at ./boot.jl:489 include_string at ./loading.jl:2848 _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 _include at ./loading.jl:2908 include at ./Base.jl:311 exec_options at ./client.jl:320 _start at ./client.jl:553 jfptr__start_66188.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2346 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x738d6dbb4249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 812 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_54969.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2346 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_54969.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2346 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007fe6760f1000 Total snapshots: 177. Utilization: 0% ╎177 @Base/task.jl:1129 wait_forever() 176╎ 177 @Base/task.jl:1192 wait() [1779] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/bin/svrg:145 [812] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/test/test_svrg.jl:74 _ZN4llvm9CallGraphD1Ev at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) ijl_subtype_env at /source/src/subtype.c:2266 subtype_tuple_tail at /source/src/subtype.c:1294 [inlined] subtype_tuple at /source/src/subtype.c:1376 [inlined] subtype at /source/src/subtype.c:1550 subtype_unionall at /source/src/subtype.c:965 subtype at /source/src/subtype.c:1513 exists_subtype at /source/src/subtype.c:1793 [inlined] forall_exists_subtype at /source/src/subtype.c:1822 ijl_subtype_env at /source/src/subtype.c:2281 local_forall_exists_subtype at /source/src/subtype.c:1630 forall_exists_equal at /source/src/subtype.c:1775 subtype at /source/src/subtype.c:1556 subtype_unionall at /source/src/subtype.c:965 subtype at /source/src/subtype.c:1513 subtype_unionall at /source/src/subtype.c:972 subtype at /source/src/subtype.c:1510 exists_subtype at /source/src/subtype.c:1793 [inlined] forall_exists_subtype at /source/src/subtype.c:1822 ijl_subtype_env at /source/src/subtype.c:2281 subtype_tuple_tail at /source/src/subtype.c:1294 [inlined] subtype_tuple at /source/src/subtype.c:1376 [inlined] subtype at /source/src/subtype.c:1550 exists_subtype at /source/src/subtype.c:1793 [inlined] forall_exists_subtype at /source/src/subtype.c:1822 ijl_types_equal at /source/src/subtype.c:2391 [inlined] ijl_types_equal at /source/src/subtype.c:2321 jl_specializations_get_linfo_ at /source/src/gf.c:237 PkgEval terminated after 2732.37s: test duration exceeded the time limit