Package evaluation of BoundaryLayerDynamics on Julia 1.13.0-DEV.897 (a39797a4fb*) started at 2025-07-24T18:57:55.868 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.4s ################################################################################ # Installation # Installing BoundaryLayerDynamics... Resolving package versions... Installed HDF5 ─ v0.16.16 Updating `~/.julia/environments/v1.13/Project.toml` [9d12ad70] + BoundaryLayerDynamics v1.0.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 ⌅ [79e6a3ab] + Adapt v3.7.2 ⌃ [4fba245c] + ArrayInterface v7.7.1 [9d12ad70] + BoundaryLayerDynamics v1.0.0 [34da2185] + Compat v4.17.0 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.5 [e2ba6199] + ExprTools v0.1.10 [7a1cc6ca] + FFTW v1.9.0 ⌅ [46192b85] + GPUArraysCore v0.1.5 ⌅ [f67ccb44] + HDF5 v0.16.16 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [da04e1cc] + MPI v0.20.22 [3da0fdf6] + MPIPreferences v0.1.11 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [eebad327] + PkgVersion v0.3.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [3cdcf5f2] + RecipesBase v1.3.4 ⌅ [731186ca] + RecursiveArrayTools v2.38.10 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 ⌅ [2efcf032] + SymbolicIndexingInterface v0.2.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [a759f4b9] + TimerOutputs v0.5.29 [f5851436] + FFTW_jll v3.3.11+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [477f73a3] + libaec_jll v1.1.3+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.14.1+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building HDF5 → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/114e20044677badbc631ee6fdc80a67920561a29/build.log` Installation completed after 16.78s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 28.98s ################################################################################ # Testing # Testing BoundaryLayerDynamics Status `/tmp/jl_o9maAg/Project.toml` [9d12ad70] BoundaryLayerDynamics v1.0.0 ⌅ [f67ccb44] HDF5 v0.16.16 [da04e1cc] MPI v0.20.22 [a759f4b9] TimerOutputs v0.5.29 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_o9maAg/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 ⌅ [79e6a3ab] Adapt v3.7.2 ⌃ [4fba245c] ArrayInterface v7.7.1 [9d12ad70] BoundaryLayerDynamics v1.0.0 [34da2185] Compat v4.17.0 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [7a1cc6ca] FFTW v1.9.0 ⌅ [46192b85] GPUArraysCore v0.1.5 ⌅ [f67ccb44] HDF5 v0.16.16 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [da04e1cc] MPI v0.20.22 [3da0fdf6] MPIPreferences v0.1.11 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [eebad327] PkgVersion v0.3.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [3cdcf5f2] RecipesBase v1.3.4 ⌅ [731186ca] RecursiveArrayTools v2.38.10 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 ⌅ [2efcf032] SymbolicIndexingInterface v0.2.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [a759f4b9] TimerOutputs v0.5.29 [f5851436] FFTW_jll v3.3.11+0 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.1+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [856f044c] MKL_jll v2025.2.0+0 [7cb0a576] MPICH_jll v4.3.1+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.8+0 [477f73a3] libaec_jll v1.1.3+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 18526.2 ms ✓ HDF5 1 dependency successfully precompiled in 19 seconds. 41 already precompiled. Precompiling packages... 9214.4 ms ✓ RecursiveArrayTools 1 dependency successfully precompiled in 9 seconds. 29 already precompiled. Testing BoundaryLayerDynamics.jl... (single process) Test Summary: | Pass Total Time Atmospheric Boundary Layer Simulations | 290 290 16m45.1s ─────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1047s / 96.0% 28.5GiB / 99.0% Section ncalls time %tot avg alloc %tot avg ─────────────────────────────────────────────────────────────────────────────────────────────── BoundaryLayerDynamics.jl Tests 1 1005s 100.0% 1005s 28.2GiB 100.0% 28.2GiB Advection 1 351s 34.9% 351s 4.80GiB 17.0% 4.80GiB Nonlinear Processes 28 240s 23.9% 8.58s 382MiB 1.3% 13.7MiB Resolved Advection 28 239s 23.8% 8.54s 357MiB 1.2% 12.8MiB Linear Processes 28 672μs 0.0% 24.0μs 17.1KiB 0.0% 624B Laminar Flows 1 146s 14.5% 146s 6.04GiB 21.4% 6.04GiB ABL Simulation 1 134s 13.3% 134s 5.58GiB 19.8% 5.58GiB LES 1 126s 12.5% 126s 2.73GiB 9.7% 2.73GiB Nonlinear Processes 2 44.3s 4.4% 22.1s 802MiB 2.8% 401MiB Static Smagorinsky SGS Model 2 34.0s 3.4% 17.0s 545MiB 1.9% 273MiB Linear Processes 2 57.3ms 0.0% 28.6ms 197KiB 0.0% 98.7KiB Pressure 1 61.0s 6.1% 61.0s 3.28GiB 11.6% 3.28GiB Projections 11 110ms 0.0% 10.0ms 3.32MiB 0.0% 309KiB Pressure Solver 11 110ms 0.0% 10.0ms 3.32MiB 0.0% 309KiB Logging 1 55.4s 5.5% 55.4s 1.48GiB 5.2% 1.48GiB ODE 1 39.9s 4.0% 39.9s 1.12GiB 4.0% 1.12GiB Transforms 1 31.7s 3.2% 31.7s 662MiB 2.3% 662MiB Output 1 30.9s 3.1% 30.9s 1.55GiB 5.5% 1.55GiB Diffusion 1 14.6s 1.5% 14.6s 566MiB 2.0% 566MiB Linear Processes 1 1.41s 0.1% 1.41s 11.5MiB 0.0% 11.5MiB Molecular Diffusion 3 1.41s 0.1% 469ms 11.5MiB 0.0% 3.84MiB Nonlinear Processes 1 227ms 0.0% 227ms 1.72MiB 0.0% 1.72MiB Derivatives 1 11.2s 1.1% 11.2s 388MiB 1.3% 388MiB Nonlinear Processes 1 3.11s 0.3% 3.11s 53.5MiB 0.2% 53.5MiB VorticityTest 1 2.50s 0.2% 2.50s 45.7MiB 0.2% 45.7MiB Linear Processes 1 17.3ms 0.0% 17.3ms 74.3KiB 0.0% 74.3KiB Grid 1 2.93s 0.3% 2.93s 55.1MiB 0.2% 55.1MiB ─────────────────────────────────────────────────────────────────────────────────────────────── PrecompilingPrecompilingPrecompilingPrecompiling packages...packages...packages...packages... ExprToolsExprToolsExprTools Being precompiled by another process (pid: 188, pidfile: /home/pkgeval/.julia/compiled/v1.13/ExprTools/eM8wu_gFADj.ji.pidfile) Being precompiled by another process (pid: 188, pidfile: /home/pkgeval/.julia/compiled/v1.13/ExprTools/eM8wu_gFADj.ji.pidfile) Being precompiled by another process (pid: 188, pidfile: /home/pkgeval/.julia/compiled/v1.13/ExprTools/eM8wu_gFADj.ji.pidfile) MPI MPI Being precompiled by another process (pid: 189, pidfile: /home/pkgeval/.julia/compiled/v1.13/MPI/nO0XF_gFADj.ji.pidfile)  Being precompiled by another process (pid: 189, pidfile: /home/pkgeval/.julia/compiled/v1.13/MPI/nO0XF_gFADj.ji.pidfile) Adapt Being precompiled by another process (pid: 190, pidfile: /home/pkgeval/.julia/compiled/v1.13/Adapt/rUIgN_gFADj.ji.pidfile) 6132.0 ms ✓ ExprTools 6011.0 ms ✓ Adapt RecipesBase Being precompiled by another process (pid: 187, pidfile: /home/pkgeval/.julia/compiled/v1.13/RecipesBase/8e2Mm_gFADj.ji.pidfile) SymbolicIndexingInterface Being precompiled by another process (pid: 188, pidfile: /home/pkgeval/.julia/compiled/v1.13/SymbolicIndexingInterface/nIEWT_gFADj.ji.pidfile) 6742.4 ms ✓ SymbolicIndexingInterface 5387.5 ms ✓ Adapt RecipesBase Being precompiled by another process (pid: 187, pidfile: /home/pkgeval/.julia/compiled/v1.13/RecipesBase/8e2Mm_gFADj.ji.pidfile) MPI Being precompiled by another process (pid: 189, pidfile: /home/pkgeval/.julia/compiled/v1.13/MPI/nO0XF_gFADj.ji.pidfile) HDF5 Being precompiled by another process (pid: 190, pidfile: /home/pkgeval/.julia/compiled/v1.13/HDF5/L7Dga_gFADj.ji.pidfile) 34166.7 ms ✓ RecipesBase 6647.3 ms ✓ SymbolicIndexingInterface HDF5 Being precompiled by another process (pid: 190, pidfile: /home/pkgeval/.julia/compiled/v1.13/HDF5/L7Dga_gFADj.ji.pidfile) 43652.2 ms ✓ ExprTools 40843.9 ms ✓ Adapt TimerOutputs Being precompiled by another process (pid: 188, pidfile: /home/pkgeval/.julia/compiled/v1.13/TimerOutputs/hd2yD_gFADj.ji.pidfile) 8508.1 ms ✓ ArrayInterface 6717.0 ms ✓ GPUArraysCore 6742.1 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 6754.4 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 16003.7 ms ✓ RecursiveArrayTools 86805.2 ms ✓ MPI 87963.4 ms ✓ MPI 4410.4 ms ✓ Adapt 81078.5 ms ✓ TimerOutputs 57119.5 ms ✓ TimerOutputs 7148.4 ms ✓ ArrayInterface 5205.8 ms ✓ GPUArraysCore 94817.7 ms ✓ RecipesBase 93436.7 ms ✓ MPI 5189.4 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 25838.4 ms ✓ RecipesBase 5285.6 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 5080.1 ms ✓ SymbolicIndexingInterface HDF5 Being precompiled by another process (pid: 190, pidfile: /home/pkgeval/.julia/compiled/v1.13/HDF5/L7Dga_gFADj.ji.pidfile) 124811.1 ms ✓ ExprTools 7005.2 ms ✓ ArrayInterface 11333.7 ms ✓ RecursiveArrayTools 126853.1 ms ✓ HDF5 135686.8 ms ✓ ExprTools 4799.6 ms ✓ GPUArraysCore 117126.4 ms ✓ HDF5 12 dependencies successfully precompiled in 139 seconds. 67 already precompiled. 93921.5 ms ✓ HDF5 12 dependencies successfully precompiled in 140 seconds. 67 already precompiled. 8071.7 ms ✓ ArrayInterface 6659.7 ms ✓ GPUArraysCore 141586.8 ms ✓ SymbolicIndexingInterface 141613.6 ms ✓ RecipesBase 147728.2 ms ✓ MPI TimerOutputs Being precompiled by another process (pid: 189, pidfile: /home/pkgeval/.julia/compiled/v1.13/TimerOutputs/hd2yD_gFADj.ji.pidfile) 6772.5 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 6964.6 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 15907.9 ms ✓ RecursiveArrayTools 62210.7 ms ✓ TimerOutputs 48476.1 ms ✓ TimerOutputs 12 dependencies successfully precompiled in 201 seconds. 67 already precompiled. 4463.4 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 78482.1 ms ✓ HDF5 4103.1 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 7631.1 ms ✓ RecursiveArrayTools 12 dependencies successfully precompiled in 218 seconds. 67 already precompiled. Fatal error in internal_Init_thread: Other MPI error, error stack: internal_Init_thread(71)...........: MPI_Init_thread(argc=(nil), argv=(nil), required=2, provided=0x7fff39793470) failed MPII_Init_thread(257)..............: MPID_Init(65)......................: init_world(169)....................: channel initialization failed MPIDI_CH3_Init(84).................: MPID_nem_init(314).................: MPID_nem_tcp_init(175).............: MPID_nem_tcp_get_business_card(400): GetSockInterfaceAddr(373)..........: gethostbyname failed, BoundaryLayerDynamics-primary-gdW7e994 (errno 2) Error During MPI Tests (n=4) at /home/pkgeval/.julia/packages/BoundaryLayerDynamics/x9Zng/test/runtests.jl:47 Stacktrace: [1] top-level scope @ ~/.julia/packages/BoundaryLayerDynamics/x9Zng/test/runtests.jl:47 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [3] top-level scope @ none:6 [4] eval(m::Module, e::Any) @ Core ./boot.jl:489 [5] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [6] _start() @ Base ./client.jl:553 Testing failed after 1076.89s ERROR: LoadError: Package BoundaryLayerDynamics errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2661 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2510 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:311 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [12] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1393.93s: package tests unexpectedly errored