Package evaluation of StructuralIdentifiability on Julia 1.13.0-DEV.888 (0e1aa6c7eb*) started at 2025-07-22T15:16:25.809 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.8s ################################################################################ # Installation # Installing StructuralIdentifiability... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [220ca800] + StructuralIdentifiability v0.5.15 Updating `~/.julia/environments/v1.13/Manifest.toml` ⌅ [c3fe647b] + AbstractAlgebra v0.44.13 [a9b6321e] + Atomix v1.1.1 [861a8166] + Combinatorics v1.0.3 [34da2185] + Compat v4.17.0 [864edb3b] + DataStructures v0.18.22 [e2ba6199] + ExprTools v0.1.10 [0b43b601] + Groebner v0.9.4 [18e54dd8] + IntegerMathUtils v0.1.3 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.0 [1914dd2f] + MacroTools v0.5.16 ⌅ [2edaba10] + Nemo v0.49.5 [bac558e1] + OrderedCollections v1.8.1 [3e851597] + ParamPunPam v0.5.2 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.10.4 [fb686558] + RandomExtensions v0.4.4 [220ca800] + StructuralIdentifiability v0.5.15 [a759f4b9] + TimerOutputs v0.5.29 [013be700] + UnsafeAtomics v0.3.0 ⌅ [e134572f] + FLINT_jll v300.200.201+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [3a97d323] + MPFR_jll v4.2.2+0 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.37s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 215.56s ################################################################################ # Testing # Testing StructuralIdentifiability Status `/tmp/jl_uNeCDA/Project.toml` ⌅ [c3fe647b] AbstractAlgebra v0.44.13 [4c88cf16] Aqua v0.8.13 [2a0fbf3d] CPUSummary v0.2.6 [861a8166] Combinatorics v1.0.3 [864edb3b] DataStructures v0.18.22 [0b43b601] Groebner v0.9.4 [c8e1da08] IterTools v1.10.0 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.49.5 [3e851597] ParamPunPam v0.5.2 [aea7be01] PrecompileTools v1.3.2 [27ebfcd6] Primes v0.5.7 [276daf66] SpecialFunctions v2.5.1 [220ca800] StructuralIdentifiability v0.5.15 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_uNeCDA/Manifest.toml` ⌅ [c3fe647b] AbstractAlgebra v0.44.13 [4c88cf16] Aqua v0.8.13 [a9b6321e] Atomix v1.1.1 [2a0fbf3d] CPUSummary v0.2.6 [861a8166] Combinatorics v1.0.3 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.17.0 [adafc99b] CpuId v0.3.1 [864edb3b] DataStructures v0.18.22 [ab62b9b5] DeepDiffs v1.2.0 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [0b43b601] Groebner v0.9.4 [615f187c] IfElse v0.1.1 [18e54dd8] IntegerMathUtils v0.1.3 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.49.5 [bac558e1] OrderedCollections v1.8.1 [3e851597] ParamPunPam v0.5.2 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.10.4 [fb686558] RandomExtensions v0.4.4 [276daf66] SpecialFunctions v2.5.1 [aedffcd0] Static v1.2.0 [220ca800] StructuralIdentifiability v0.5.15 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e134572f] FLINT_jll v300.200.201+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [3a97d323] MPFR_jll v4.2.2+0 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 6405.8 ms ✓ AbstractAlgebra → TestExt 1 dependency successfully precompiled in 7 seconds. 18 already precompiled. Resolving package versions... Installed ImplicitDiscreteSolve ─ v0.1.3 Updating `/tmp/jl_uNeCDA/Project.toml` [961ee093] + ModelingToolkit v10.13.0 Updating `/tmp/jl_uNeCDA/Manifest.toml` [47edcb42] + ADTypes v1.15.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.19.0 [4c555306] + ArrayLayouts v1.11.2 [e2ed5e7c] + Bijections v0.2.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.7.0 [70df07ce] + BracketingNonlinearSolve v1.3.0 [d360d2e6] + ChainRulesCore v1.25.2 [fb6a15b2] + CloseOpenIntervals v0.1.13 [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [2b5f629d] + DiffEqBase v6.178.0 [459566f4] + DiffEqCallbacks v4.8.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.3 [8d63f2c5] + DispatchDoctor v0.4.26 [31c24e10] + Distributions v0.25.120 [5b8099bc] + DomainSets v0.7.15 [7c1d4256] + DynamicPolynomials v0.6.2 [06fc5a27] + DynamicQuantities v1.8.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.12 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.3 [1a297f60] + FillArrays v1.13.0 [64ca27bc] + FindFirstFunctions v1.4.1 [6a86dc24] + FiniteDiff v2.27.0 [1fa38f19] + Format v1.3.7 ⌅ [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.0 [34004b35] + HypergeometricFunctions v0.3.28 [3263718b] + ImplicitDiscreteSolve v0.1.3 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [82899510] + IteratorInterfaceExtensions v1.0.0 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.1.2 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.16.1 [ba0b0d4f] + Krylov v0.10.1 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.8 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.6.1 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [7ed4a6bd] + LinearSolve v3.23.0 [d8e11817] + MLStyle v0.4.17 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [961ee093] + ModelingToolkit v10.13.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [8913a72c] + NonlinearSolve v4.10.0 [be0214bd] + NonlinearSolveBase v1.13.0 [5959db7a] + NonlinearSolveFirstOrder v1.6.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.7.0 [26075421] + NonlinearSolveSpectralMethods v1.2.0 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [bbf590c4] + OrdinaryDiffEqCore v1.26.2 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.5 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.35.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [9dfe8606] + SCCNonlinearSolve v1.4.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.104.0 [19f34311] + SciMLJacobianOperators v0.1.8 [c0aeaf25] + SciMLOperators v1.3.1 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.7.0 [699a6c99] + SimpleTraits v0.9.4 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.1 [0a514795] + SparseMatrixColorings v0.4.21 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [7792a7ef] + StrideArraysCore v0.5.7 [892a3eda] + StringManipulation v0.4.1 [2efcf032] + SymbolicIndexingInterface v0.3.42 [19f23fe9] + SymbolicLimits v0.2.2 [d1185830] + SymbolicUtils v3.29.0 [0c5d862f] + Symbolics v6.45.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [410a4b4d] + Tricks v0.1.10 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.23.1 [a7c27f48] + Unityper v0.1.6 [897b6980] + WeakValueDicts v0.1.0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [f50d1b31] + Rmath_jll v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [9fa8497b] + Future v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [a63ad114] + Mmap v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [4607b0f0] + SuiteSparse Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Resolving package versions... Updating `/tmp/jl_uNeCDA/Project.toml` [0c5d862f] + Symbolics v6.45.0 No packages added to or removed from `/tmp/jl_uNeCDA/Manifest.toml` Precompiling packages... 2384.3 ms ✓ MaybeInplace 2328.5 ms ✓ SimpleTraits 6960.9 ms ✓ Latexify 2657.0 ms ✓ Accessors → UnitfulExt 3301.1 ms ✓ DispatchDoctor 1658.2 ms ✓ TruncatedStacktraces 3603.8 ms ✓ SciMLOperators 11758.9 ms ✓ CommonMark 10574.0 ms ✓ SparseMatrixColorings 4716.2 ms ✓ Static 26369.9 ms ✓ PrettyTables 1089.6 ms ✓ oneTBB_jll 3082.7 ms ✓ ArnoldiMethod 1388.1 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1248.9 ms ✓ ResettableStacks 15932.4 ms ✓ ArrayLayouts 1121.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1124.5 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1187.8 ms ✓ Accessors → StaticArraysExt 5302.7 ms ✓ MultivariatePolynomials 3109.4 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 1998.4 ms ✓ HypergeometricFunctions 3338.2 ms ✓ IntelOpenMP_jll 6611.1 ms ✓ ForwardDiff 1047.7 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 1799.1 ms ✓ Latexify → SparseArraysExt 777.3 ms ✓ DispatchDoctor → DispatchDoctorEnzymeCoreExt 11591.1 ms ✓ DynamicQuantities 1580.1 ms ✓ DispatchDoctor → DispatchDoctorChainRulesCoreExt 1191.1 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1793.2 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 45564.4 ms ✓ JuliaFormatter 1927.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseMatrixColoringsExt 1111.8 ms ✓ BitTwiddlingConvenienceFunctions 10080.5 ms ✓ StaticArrayInterface 2959.2 ms ✓ CPUSummary 4560.5 ms ✓ SymbolicIndexingInterface 10050.6 ms ✓ Graphs 3680.7 ms ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 5020.5 ms ✓ BlockArrays 5130.5 ms ✓ DynamicPolynomials 3300.1 ms ✓ StatsFuns 5860.7 ms ✓ MKL_jll 4490.8 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 3286.1 ms ✓ FastPower → FastPowerForwardDiffExt 2066.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 3081.2 ms ✓ Unitful → ForwardDiffExt 4718.0 ms ✓ DynamicQuantities → DynamicQuantitiesUnitfulExt 2304.6 ms ✓ DynamicQuantities → DynamicQuantitiesLinearAlgebraExt 1438.9 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1989.4 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1367.4 ms ✓ CloseOpenIntervals 1592.4 ms ✓ LayoutPointers 2428.3 ms ✓ PolyesterWeave 6080.6 ms ✓ RecursiveArrayTools 6718.8 ms ✓ LazyArrays 3253.5 ms ✓ BlockArrays → BlockArraysAdaptExt 78835.5 ms ✓ SymbolicUtils 4066.6 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1441.6 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 11327.1 ms ✓ Distributions 4919.7 ms ✓ NLSolversBase 2274.9 ms ✓ StrideArraysCore 5793.8 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 15422.9 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 29084.7 ms ✓ SciMLBase 4045.4 ms ✓ LazyArrays → LazyArraysStaticArraysExt 4564.5 ms ✓ LazyArrays → LazyArraysBlockArraysExt 10956.3 ms ✓ SymbolicLimits 5858.7 ms ✓ Distributions → DistributionsTestExt 5829.9 ms ✓ Distributions → DistributionsChainRulesCoreExt 6874.0 ms ✓ LineSearches 2908.9 ms ✓ Polyester 4511.6 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 5670.7 ms ✓ SciMLBase → SciMLBaseMLStyleExt 9875.7 ms ✓ SciMLJacobianOperators 5132.5 ms ✓ SCCNonlinearSolve 11825.8 ms ✓ Optim 3107.3 ms ✓ FastBroadcast 79737.7 ms ✓ LinearSolve 171052.3 ms ✓ Symbolics 22176.9 ms ✓ LineSearch 16184.1 ms ✓ NonlinearSolveBase 3838.4 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 11826.5 ms ✓ LinearSolve → LinearSolveSparseArraysExt 8257.6 ms ✓ LinearSolve → LinearSolveEnzymeExt 11471.7 ms ✓ LinearSolve → LinearSolveForwardDiffExt 15837.8 ms ✓ Symbolics → SymbolicsForwardDiffExt 12036.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 3505.1 ms ✓ LineSearch → LineSearchLineSearchesExt 3522.5 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 3349.0 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 5153.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 8322.4 ms ✓ BracketingNonlinearSolve 3017.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 5126.8 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 6085.2 ms ✓ DiffEqBase 3687.2 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 4001.4 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 6185.9 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 4541.7 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 5033.1 ms ✓ DiffEqBase → DiffEqBaseDistributionsExt 3695.5 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 10719.9 ms ✓ DiffEqCallbacks 7393.2 ms ✓ OrdinaryDiffEqCore 3741.5 ms ✓ NonlinearSolveBase → NonlinearSolveBaseDiffEqBaseExt 3581.9 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 18128.3 ms ✓ SimpleNonlinearSolve 16609.4 ms ✓ DiffEqNoiseProcess 8069.4 ms ✓ JumpProcesses 3578.3 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 10601.1 ms ✓ NonlinearSolveSpectralMethods 32163.7 ms ✓ NonlinearSolveFirstOrder 24948.2 ms ✓ NonlinearSolveQuasiNewton 5329.1 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 6580.1 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveDiffEqBaseExt 6745.6 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 10270.2 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 8937.2 ms ✓ ImplicitDiscreteSolve 36790.2 ms ✓ NonlinearSolve Info Given ModelingToolkit was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in var"#bareiss_update_virtual_colswap_mtk!#1386"(Any, typeof(ModelingToolkit.bareiss_update_virtual_colswap_mtk!), Any, ModelingToolkit.SparseMatrixCLIL{T, Ti} where Ti<:Integer where T, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/ModelingToolkit/Ma5jP/src/systems/sparsematrixclil.jl 332070.0 ms ✓ ModelingToolkit 121 dependencies successfully precompiled in 1493 seconds. 187 already precompiled. 1 dependency had output during precompilation: ┌ ModelingToolkit │ [Output was shown above] └ Precompiling packages... 11632.7 ms ✓ Groebner → GroebnerDynamicPolynomialsExt 1 dependency successfully precompiled in 12 seconds. 44 already precompiled. Precompiling packages... 113390.9 ms ✓ Symbolics → SymbolicsNemoExt 27522.9 ms ✓ Symbolics → SymbolicsGroebnerExt 2 dependencies successfully precompiled in 143 seconds. 163 already precompiled. 1 dependency had output during precompilation: ┌ Symbolics → SymbolicsNemoExt │ [ Info: Assuming ((1//128)*(√((5120//1)*(a^4)) - (80//1)*(a^2))) != 0 │ [ Info: Assuming ((1//128)*(√((5120//1)*(a^4)) - (80//1)*(a^2))) != 0 └ Precompiling packages... 64405.0 ms ✓ ModelingToolkit → MTKDeepDiffsExt 1 dependency successfully precompiled in 67 seconds. 309 already precompiled. Precompiling packages... 82644.0 ms ✓ StructuralIdentifiability → ModelingToolkitSIExt 1 dependency successfully precompiled in 85 seconds. 326 already precompiled. [ Info: Testing started [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y ┌ Warning: New variable c, treating as a scalar parameter └ @ StructuralIdentifiability ~/.julia/packages/StructuralIdentifiability/Tp10P/src/pb_representation.jl:94 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: a [ Info: Parameters: b [ Info: Inputs: c [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: a, b [ Info: Parameters: k1, k2 [ Info: Inputs: c [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y 2.349998 seconds (935.71 k allocations: 50.749 MiB, 99.48% compilation time) 0.002430 seconds (7.36 k allocations: 337.266 KiB) 0.002277 seconds (10.84 k allocations: 487.188 KiB) 0.002110 seconds (10.63 k allocations: 477.219 KiB) 0.002649 seconds (14.56 k allocations: 657.430 KiB) 0.001487 seconds (7.79 k allocations: 358.359 KiB) 0.001039 seconds (7.49 k allocations: 303.344 KiB) 16.106650 seconds (6.51 M allocations: 353.233 MiB, 1.00% gc time, 99.78% compilation time) [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: u [ Info: Outputs: y 0.339661 seconds (110.61 k allocations: 6.249 MiB, 98.02% compilation time) [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: u [ Info: Outputs: y 0.012659 seconds (9.49 k allocations: 536.352 KiB, 87.09% compilation time) [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a, b [ Info: Inputs: u [ Info: Outputs: y Coefficient extraction for rational functions: Test Failed at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/test/extract_coefficients.jl:27 Expression: Set(C) == Set([x // 1, (y + 3) // 1, y ^ 2 // 1, one(R) // 1, 3 * one(R) // 1, -((x ^ 2 + y ^ 2)) // 1]) Evaluated: Set(AbstractAlgebra.Generic.FracFieldElem{QQMPolyRingElem}[1//3*x, 1//3*y + 1, -1//3*x^2 - 1//3*y^2, 1//3, 1, 1//3*y^2]) == Set(AbstractAlgebra.Generic.FracFieldElem{QQMPolyRingElem}[-x^2 - y^2, x, y^2, y + 3, 1, 3]) Stacktrace: [1] top-level scope @ ~/.julia/packages/StructuralIdentifiability/Tp10P/test/extract_coefficients.jl:2 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [3] macro expansion @ ~/.julia/packages/StructuralIdentifiability/Tp10P/test/extract_coefficients.jl:27 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:741 [inlined] [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y1, y2 IOEQS: Dict{QQMPolyRingElem, QQMPolyRingElem}(y2(t)_1 => -a*y2(t)_0 + a*u(t)_0 + y2(t)_1 - u(t)_1, y1(t)_2 => -y1(t)_0 + y1(t)_2) [ Info: Summary of the model: [ Info: State variables: x0, x1 [ Info: Parameters: a01, a12, a21 [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x0, x1 [ Info: Parameters: a, b, c, d [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: S, I, W, R [ Info: Parameters: a, bi, bw, gam, k, mu, xi [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4 [ Info: Parameters: alpha, b, beta, c, delta, gama, sigma [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a1, a2, a21 [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a1, a2, a21 [ Info: Inputs: u [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a01, a12, a13, a21, a31 [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: S, E, In [ Info: Parameters: N, a, b, nu [ Info: Inputs: [ Info: Outputs: y1, y2 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 39 running 1 of 1 signal (10): User defined signal 1 sym_in at ./tuple.jl:665 in at ./tuple.jl:669 [inlined] is_relevant_expr at ./../usr/share/julia/Compiler/src/ssair/ir.jl:581 [inlined] userefs at ./../usr/share/julia/Compiler/src/ssair/ir.jl:644 [inlined] renumber_ssa2! at ./../usr/share/julia/Compiler/src/ssair/ir.jl:1349 process_node! at ./../usr/share/julia/Compiler/src/ssair/ir.jl:1535 iterate_compact at ./../usr/share/julia/Compiler/src/ssair/ir.jl:1949 iterate at ./../usr/share/julia/Compiler/src/ssair/ir.jl:1871 [inlined] sroa_pass! at ./../usr/share/julia/Compiler/src/ssair/passes.jl:1504 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1035 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1048 [inlined] optimize at ./../usr/share/julia/Compiler/src/optimize.jl:1021 jfptr_optimize_82797.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 finish_nocycle at ./../usr/share/julia/Compiler/src/typeinfer.jl:232 jfptr_finish_nocycle_84211.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4476 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1378 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1561 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1570 jfptr_typeinf_ext_toplevel_84463.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 jl_apply at /source/src/julia.h:2345 [inlined] jl_type_infer at /source/src/gf.c:462 jl_compile_method_internal at /source/src/gf.c:3306 _jl_invoke at /source/src/gf.c:3799 [inlined] ijl_apply_generic at /source/src/gf.c:4004 jl_apply at /source/src/julia.h:2345 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2848 _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 _include at ./loading.jl:2908 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 unknown function (ip: 0x704d6f9190b2) at (unknown file) _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/test/runtests.jl:161 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/test/runtests.jl:159 [inlined] macro expansion at ./timing.jl:645 [inlined] top-level scope at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/test/runtests.jl:158 _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_invoke at /source/src/gf.c:3814 jl_toplevel_eval_flex at /source/src/toplevel.c:762 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2848 _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 _include at ./loading.jl:2908 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_56592.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 jl_apply at /source/src/julia.h:2345 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 exec_options at ./client.jl:286 _start at ./client.jl:553 jfptr__start_63823.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 jl_apply at /source/src/julia.h:2345 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x704d8c8d0249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_47924.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 jl_apply at /source/src/julia.h:2345 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000704c42a01870 Total snapshots: 416. Utilization: 0% ╎416 @Base/task.jl:1129 wait_forever() 415╎ 416 @Base/task.jl:1192 wait() [39] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/test/identifiability.jl:1 PkgEval terminated after 2723.35s: test duration exceeded the time limit