Package evaluation of Stheno on Julia 1.13.0-DEV.888 (0e1aa6c7eb*) started at 2025-07-22T17:40:48.601 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.0s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.2 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.25.2 [34da2185] + Compat v4.17.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.66s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 67.71s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_GMqyco/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.32 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_GMqyco/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.2 [a9b6321e] Atomix v1.1.1 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.25.2 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.17.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.3 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.37 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.2 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.4.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.14 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.37+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 9362.6 ms ✓ Documenter 1 dependency successfully precompiled in 10 seconds. 29 already precompiled. Precompiling packages... 13005.7 ms ✓ ChainRules 9083.9 ms ✓ UnsafeAtomics → UnsafeAtomicsLLVM 9033.5 ms ✓ KernelAbstractions 9969.1 ms ✓ ForwardDiff 3605.3 ms ✓ KernelAbstractions → SparseArraysExt 3013.5 ms ✓ KernelAbstractions → LinearAlgebraExt 3068.5 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 4292.4 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 27180.8 ms ✓ GPUArrays 70078.9 ms ✓ Zygote 10 dependencies successfully precompiled in 153 seconds. 95 already precompiled. Precompiling packages... 10656.9 ms ✓ Zygote → ZygoteDistancesExt 1 dependency successfully precompiled in 12 seconds. 109 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#284` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 19m25.6s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1184s / 98.4% 29.0GiB / 99.3% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 746s 64.0% 746s 20.2GiB 70.2% 20.2GiB addition 1 421s 36.1% 421s 11.7GiB 40.8% 11.7GiB Standardised Tests (correlated sum) 1 232s 19.9% 232s 6.39GiB 22.2% 6.39GiB adj_ad 9 25.6s 2.2% 2.85s 1.01GiB 3.5% 115MiB adj_fd 9 8.91s 0.8% 990ms 311MiB 1.1% 34.6MiB Standardised Tests (independent sum) 1 139s 11.9% 139s 5.02GiB 17.5% 5.02GiB adj_ad 9 26.5s 2.3% 2.95s 1.22GiB 4.2% 139MiB adj_fd 9 10.5s 0.9% 1.17s 295MiB 1.0% 32.8MiB Correlated GPs 1 46.3s 4.0% 46.3s 278MiB 0.9% 278MiB Consistency Tests 1 19.8s 1.7% 19.8s 122MiB 0.4% 122MiB Verify mean / kernel numerically 1 3.22s 0.3% 3.22s 41.5MiB 0.1% 41.5MiB Consistency Tests 1 1.97s 0.2% 1.97s 14.3MiB 0.0% 14.3MiB product 1 151s 13.0% 151s 3.90GiB 13.6% 3.90GiB multiply by function 1 89.3s 7.7% 89.3s 2.08GiB 7.2% 2.08GiB Diff Tests 1 49.6s 4.3% 49.6s 1.57GiB 5.5% 1.57GiB adj_ad 9 19.2s 1.6% 2.13s 865MiB 2.9% 96.1MiB adj_fd 9 5.74s 0.5% 637ms 110MiB 0.4% 12.3MiB Consistency Tests 1 6.70s 0.6% 6.70s 103MiB 0.4% 103MiB multiply by constant 1 62.1s 5.3% 62.1s 1.82GiB 6.3% 1.82GiB Diff Tests 1 46.4s 4.0% 46.4s 1.77GiB 6.2% 1.77GiB adj_ad 9 14.5s 1.2% 1.61s 790MiB 2.7% 87.8MiB adj_fd 9 9.92s 0.9% 1.10s 289MiB 1.0% 32.1MiB Consistency Tests 1 4.08s 0.4% 4.08s 19.5MiB 0.1% 19.5MiB GP mul errors 1 11.4ms 0.0% 11.4ms 40.0KiB 0.0% 40.0KiB compose 1 81.6s 7.0% 81.6s 2.32GiB 8.1% 2.32GiB general 1 49.2s 4.2% 49.2s 1.49GiB 5.2% 1.49GiB Diff Tests 1 43.1s 3.7% 43.1s 1.44GiB 5.0% 1.44GiB adj_ad 9 13.5s 1.2% 1.50s 700MiB 2.4% 77.8MiB adj_fd 9 5.53s 0.5% 615ms 109MiB 0.4% 12.1MiB Consistency Tests 1 4.87s 0.4% 4.87s 38.2MiB 0.1% 38.2MiB Stretch 1 26.6s 2.3% 26.6s 746MiB 2.5% 746MiB scalar stretch 1 25.9s 2.2% 25.9s 733MiB 2.5% 733MiB scalar input 1 25.1s 2.2% 25.1s 730MiB 2.5% 730MiB adj_fd 9 9.52s 0.8% 1.06s 277MiB 0.9% 30.8MiB adj_ad 9 3.09s 0.3% 343ms 139MiB 0.5% 15.5MiB vector input 1 775ms 0.1% 775ms 3.19MiB 0.0% 3.19MiB Vector stretch 1 615ms 0.1% 615ms 9.78MiB 0.0% 9.78MiB Matrix stretch 1 136ms 0.0% 136ms 2.96MiB 0.0% 2.96MiB Shift 1 3.02s 0.3% 3.02s 39.4MiB 0.1% 39.4MiB Shift{Vector{Float64}} 1 1.59s 0.1% 1.59s 14.1MiB 0.0% 14.1MiB Shift{Float64} 1 1.43s 0.1% 1.43s 25.2MiB 0.1% 25.2MiB Select 1 1.60s 0.1% 1.60s 31.8MiB 0.1% 31.8MiB evaluation 1 713ms 0.1% 713ms 20.2MiB 0.1% 20.2MiB idx isa Vector 1 513ms 0.0% 513ms 7.68MiB 0.0% 7.68MiB idx isa Integer 1 374ms 0.0% 374ms 3.88MiB 0.0% 3.88MiB Periodic 1 1.15s 0.1% 1.15s 33.1MiB 0.1% 33.1MiB cross 1 32.2s 2.8% 32.2s 1.37GiB 4.8% 1.37GiB block arrays 1 17.6s 1.5% 17.6s 774MiB 2.6% 774MiB Stheno._collect ∘ _mortar 1 14.8s 1.3% 14.8s 665MiB 2.3% 665MiB BlockMatrix 1 7.68s 0.7% 7.68s 366MiB 1.2% 366MiB adj_fd 1 969ms 0.1% 969ms 111MiB 0.4% 111MiB adj_ad 1 59.2ms 0.0% 59.2ms 2.35MiB 0.0% 2.35MiB BlockVector 1 7.11s 0.6% 7.11s 299MiB 1.0% 299MiB adj_fd 1 829ms 0.1% 829ms 12.3MiB 0.0% 12.3MiB adj_ad 1 219ms 0.0% 219ms 15.6MiB 0.1% 15.6MiB fdm stuff 1 2.84s 0.2% 2.84s 109MiB 0.4% 109MiB Correctness tests 1 8.26s 0.7% 8.26s 393MiB 1.3% 393MiB Standardised Tests 1 6.28s 0.5% 6.28s 234MiB 0.8% 234MiB gp 1 200s 17.2% 200s 4.37GiB 15.2% 4.37GiB sparse gp 1 21.6s 1.9% 21.6s 380MiB 1.3% 380MiB SparseFiniteGP inference 1 16.6s 1.4% 16.6s 267MiB 0.9% 267MiB SparseFiniteGP methods 1 4.59s 0.4% 4.59s 108MiB 0.4% 108MiB SparseFiniteGP Constructors 1 382ms 0.0% 382ms 4.08MiB 0.0% 4.08MiB adj_ad 2 20.3s 1.7% 10.1s 822MiB 2.8% 411MiB gp 1 16.0s 1.4% 16.0s 256MiB 0.9% 256MiB GP 1 15.7s 1.4% 15.7s 253MiB 0.9% 253MiB independent GPs 1 292ms 0.0% 292ms 2.59MiB 0.0% 2.59MiB wrapped AbstractGP 1 12.9ms 0.0% 12.9ms 286KiB 0.0% 286KiB adj_fd 2 2.65s 0.2% 1.33s 41.0MiB 0.1% 20.5MiB derived_gp 1 182μs 0.0% 182μs 1.59KiB 0.0% 1.59KiB gaussian_process_probabilistic_programme 1 140s 12.0% 140s 2.26GiB 7.9% 2.26GiB Zygote 1 20.7s 1.8% 20.7s 0.96GiB 3.3% 0.96GiB nested gppp 1 16.5s 1.4% 16.5s 89.3MiB 0.3% 89.3MiB External Consistency 1 13.9s 1.2% 13.9s 93.1MiB 0.3% 93.1MiB split 1 612ms 0.1% 612ms 11.6MiB 0.0% 11.6MiB gppp macro 1 53.0ms 0.0% 53.0ms 568KiB 0.0% 568KiB doctests 1 71.9s 6.2% 71.9s 1.70GiB 5.9% 1.70GiB BlockData 1 6.91s 0.6% 6.91s 261MiB 0.9% 261MiB vcat(::GPPPInput...) 1 2.09s 0.2% 2.09s 100MiB 0.3% 100MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1377.65s PkgEval succeeded after 1487.39s