Package evaluation of OnlinePCA on Julia 1.13.0-DEV.888 (0e1aa6c7eb*) started at 2025-07-22T23:59:40.857 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.61s ################################################################################ # Installation # Installing OnlinePCA... Resolving package versions... Installed PlotlyJS ─ v0.18.16 Installed WebIO ──── v0.8.21 Updating `~/.julia/environments/v1.13/Project.toml` [975b03d1] + OnlinePCA v0.3.10 Updating `~/.julia/environments/v1.13/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [c7e460c6] + ArgParse v1.2.0 [bf4720bc] + AssetRegistry v0.1.0 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [35d6a980] + ColorSchemes v3.30.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.17.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [38e38edf] + GLM v1.9.0 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.17 [9fb69e20] + Hiccup v0.2.2 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.4 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [97c1335a] + JSExpr v0.5.4 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [4d4711f2] + MatrixMarket v0.5.2 [739be429] + MbedTLS v1.1.9 [e1d29d7a] + Missings v1.2.0 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [510215fc] + Observables v0.5.5 [975b03d1] + OnlinePCA v0.3.10 [4d8831e6] + OpenSSL v1.5.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.21 [f0f68f2c] + PlotlyJS v0.18.16 [f2990250] + PlotlyKaleido v2.3.0 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [b718987f] + TextWrap v1.0.2 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [f7e6163d] + Kaleido_jll v0.2.1+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [c8ffd9c3] + MbedTLS_jll v2.28.6+2 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [477f73a3] + libaec_jll v1.1.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.14.1+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Building WebIO ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0eef0765186f7452e52236fa42ca8c9b3c11c6e3/build.log` Building PlotlyJS → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b816b0f301b074e002476159a9ada5691eebaf61/build.log` Installation completed after 28.55s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 493.18s ################################################################################ # Testing # Testing OnlinePCA Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_yzRIcL/Project.toml` [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.120 [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.13.0 [975b03d1] + OnlinePCA v0.3.10 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [37e2e46d] ~ LinearAlgebra ⇒ v1.13.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.13.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_yzRIcL/Manifest.toml` [bf4720bc] + AssetRegistry v0.1.0 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.15 [944b1d66] ↑ CodecZlib v0.7.6 ⇒ v0.7.8 [6b39b394] + CodecZstd v0.8.6 [35d6a980] + ColorSchemes v3.30.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] ↑ Compat v4.16.0 ⇒ v4.17.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [a93c6f00] + DataFrames v1.7.0 [864edb3b] ↑ DataStructures v0.18.20 ⇒ v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.120 [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [38e38edf] + GLM v1.9.0 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.17 [9fb69e20] + Hiccup v0.2.2 [34004b35] ↑ HypergeometricFunctions v0.3.24 ⇒ v0.3.28 [842dd82b] + InlineStrings v1.4.4 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] ↑ JLLWrappers v1.5.0 ⇒ v1.7.0 [97c1335a] + JSExpr v0.5.4 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] ↑ LogExpFunctions v0.3.28 ⇒ v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.9 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [510215fc] + Observables v0.5.5 [975b03d1] + OnlinePCA v0.3.10 [4d8831e6] + OpenSSL v1.5.0 [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.1 [90014a1f] ↑ PDMats v0.11.31 ⇒ v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.21 [f0f68f2c] + PlotlyJS v0.18.16 [f2990250] + PlotlyKaleido v2.3.0 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] ↑ PtrArrays v1.2.0 ⇒ v1.3.0 [1fd47b50] ↑ QuadGK v2.10.1 ⇒ v2.11.2 [ae029012] + Requires v1.3.1 [79098fc4] ↑ Rmath v0.7.1 ⇒ v0.8.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [276daf66] ↑ SpecialFunctions v2.4.0 ⇒ v2.5.1 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [82ae8749] ↑ StatsAPI v1.7.0 ⇒ v1.7.1 [2913bbd2] ↑ StatsBase v0.34.3 ⇒ v0.34.5 [4c63d2b9] ↑ StatsFuns v1.3.1 ⇒ v1.5.0 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] ↑ TranscodingStreams v0.11.2 ⇒ v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [f7e6163d] + Kaleido_jll v0.2.1+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [c8ffd9c3] ↑ MbedTLS_jll v2.28.2+1 ⇒ v2.28.6+2 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [f50d1b31] ↑ Rmath_jll v0.4.3+0 ⇒ v0.5.1+0 [477f73a3] + libaec_jll v1.1.3+0 [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.13.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0 [44cfe95a] ↑ Pkg v1.10.0 ⇒ v1.13.0 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] ~ REPL ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.13.0 [f489334b] + StyledStrings v1.11.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.3.0+1 [deac9b47] ↑ LibCURL_jll v8.4.0+0 ⇒ v8.14.1+1 [e37daf67] ↑ LibGit2_jll v1.6.4+0 ⇒ v1.9.1+0 [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1 [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2025.7.15 [4536629a] ↑ OpenBLAS_jll v0.3.23+4 ⇒ v0.3.29+0 [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.10.1+0 [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.13.1+0 [8e850ede] ↑ nghttp2_jll v1.52.0+1 ⇒ v1.65.0+0 [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.5.0+2 Test Successfully re-resolved Status `/tmp/jl_yzRIcL/Project.toml` [c7e460c6] ArgParse v1.2.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.120 [1a297f60] FillArrays v1.13.0 [4d4711f2] MatrixMarket v0.5.2 [975b03d1] OnlinePCA v0.3.10 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_yzRIcL/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [c7e460c6] ArgParse v1.2.0 [bf4720bc] AssetRegistry v0.1.0 [d1d4a3ce] BitFlags v0.1.9 [ad839575] Blink v0.12.9 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.6 [35d6a980] ColorSchemes v3.30.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [34da2185] Compat v4.17.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [53c48c17] FixedPointNumbers v0.8.5 [de31a74c] FunctionalCollections v0.5.0 [38e38edf] GLM v1.9.0 [f67ccb44] HDF5 v0.17.2 [cd3eb016] HTTP v1.10.17 [9fb69e20] Hiccup v0.2.2 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.4 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [97c1335a] JSExpr v0.5.4 [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [50d2b5c4] Lazy v0.15.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [4d4711f2] MatrixMarket v0.5.2 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [ffc61752] Mustache v1.0.21 [a975b10e] Mux v1.0.2 [510215fc] Observables v0.5.5 [975b03d1] OnlinePCA v0.3.10 [4d8831e6] OpenSSL v1.5.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [a03496cd] PlotlyBase v0.8.21 [f0f68f2c] PlotlyJS v0.18.16 [f2990250] PlotlyKaleido v2.3.0 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [3eaba693] StatsModels v0.7.4 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [b718987f] TextWrap v1.0.2 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.2 [0f1e0344] WebIO v0.8.21 [104b5d7c] WebSockets v1.6.0 [cc8bc4a8] Widgets v0.6.7 [76eceee3] WorkerUtilities v1.6.1 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.1+0 [f7e6163d] Kaleido_jll v0.2.1+0 [7cb0a576] MPICH_jll v4.3.1+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [c8ffd9c3] MbedTLS_jll v2.28.6+2 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.8+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [477f73a3] libaec_jll v1.1.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Testing Running tests... Precompiling packages... 10461.4 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 13 seconds. 49 already precompiled. /tmp/jl_DAoWZI Running all tests... ####### Binarization of CSV (Julia API) ####### 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 ####### Binarization of CSV (Command line) ####### Precompiling packages... 1899.5 ms ✓ WorkerUtilities 1006.3 ms ✓ TextWrap 1113.9 ms ✓ DelimitedFiles 1003.5 ms ✓ ShiftedArrays 7367.0 ms ✓ Lazy 2341.7 ms ✓ CodecZstd 1521.3 ms ✓ MatrixMarket 1428.2 ms ✓ Mustache 2232.4 ms ✓ Widgets 1133.4 ms ✓ Pidfile 1446.5 ms ✓ FunctionalCollections 1490.4 ms ✓ Hiccup 1236.7 ms ✓ InlineStrings → ParsersExt 1819.1 ms ✓ Kaleido_jll 4990.7 ms ✓ WebSockets 2358.9 ms ✓ ArgParse 14634.1 ms ✓ PlotlyBase 6506.4 ms ✓ StatsModels 1760.6 ms ✓ AssetRegistry 3450.7 ms ✓ WeakRefStrings 1934.6 ms ✓ PlotlyKaleido 12323.3 ms ✓ PlotlyBase → DistributionsExt 18262.2 ms ✓ PlotlyBase → DataFramesExt 8408.8 ms ✓ GLM 8887.8 ms ✓ Mux 10170.5 ms ✓ WebIO 74672.5 ms ✓ CSV 7876.8 ms ✓ JSExpr 13163.5 ms ✓ Blink 21966.5 ms ✓ PlotlyJS 13706.3 ms ✓ PlotlyJS → CSVExt 22629.8 ms ✓ PlotlyJS → DataFramesExt 22127.7 ms ✓ OnlinePCA 33 dependencies successfully precompiled in 301 seconds. 127 already precompiled. 2 dependencies had output during precompilation: ┌ PlotlyBase → DistributionsExt │ WARNING: Constructor for type "Plot" was extended in `DistributionsExt` without explicit qualification or import. │ NOTE: Assumed "Plot" refers to `PlotlyBase.Plot`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Plot end`. │ Hint: To silence the warning, qualify `Plot` as `PlotlyBase.Plot` in the method signature or explicitly `import PlotlyBase: Plot`. └ ┌ WebSockets │ WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. │ WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. └ Parsed args: csvfile => /tmp/jl_DAoWZI/Data.csv binfile => /tmp/jl_DAoWZI/Data.zst 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 ####### Binarization of MM (Julia API) ####### ####### Binarization of MM (Command line) ####### Parsed args: binfile => /tmp/jl_DAoWZI/Data.mtx.zst mmfile => /tmp/jl_DAoWZI/Data.mtx ####### Binarization of Binary COO (Julia API) ####### ####### Binarization of Binary COO (Command line) ####### Parsed args: binfile => /tmp/jl_DAoWZI/Data.bincoo.zst bincoofile => /tmp/jl_DAoWZI/Data.bincoo ####### Summarization (Julia API) ####### 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: outdir => /tmp/jl_MrmAOX binfile => /tmp/jl_DAoWZI/Data.zst pseudocount => 1.0 mode => dense 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Julia API) ####### 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: outdir => /tmp/jl_3HvUaD binfile => /tmp/jl_DAoWZI/Data.mtx.zst pseudocount => 1.0 mode => sparse_mm 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### HVG (Julia API) ####### Highly Variable Genes are calculated... ####### HVG (Command line) ####### Parsed args: rowcv2list => /tmp/jl_MrmAOX/Feature_CV2s.csv outdir => /tmp/jl_MrmAOX binfile => /tmp/jl_DAoWZI/Data.zst rowvarlist => /tmp/jl_MrmAOX/Feature_Vars.csv rowmeanlist => /tmp/jl_MrmAOX/Feature_Means.csv Highly Variable Genes are calculated... ####### Filtering (Julia API) ####### ####### Filtering (Command line) ####### Parsed args: input => /tmp/jl_DAoWZI/Data.zst direct1 => + outdir => /tmp/jl_MrmAOX direct2 => + thr2 => 10 samplelist => /tmp/jl_MrmAOX/Sample_NoCounts.csv featurelist => /tmp/jl_MrmAOX/Feature_Means.csv thr1 => 10 Parsed args: input => /tmp/jl_DAoWZI/Data.zst direct1 => + outdir => /tmp/jl_MrmAOX direct2 => + thr2 => 10 samplelist => featurelist => /tmp/jl_MrmAOX/Feature_Means.csv thr1 => 10 Parsed args: input => /tmp/jl_DAoWZI/Data.zst direct1 => + outdir => /tmp/jl_MrmAOX direct2 => + thr2 => 10 samplelist => /tmp/jl_MrmAOX/Sample_NoCounts.csv featurelist => thr1 => 10 ####### GD (Julia API) ####### ####### GD (Command line) ####### Parsed args: scheduling => "robbins-monro" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Parsed args: scheduling => "momentum" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => "/tmp/jl_MrmAOX/Eigen_vectors.csv" lower => 0 offsetStoch => 1.0f-6 Parsed args: scheduling => "nag" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => "/tmp/jl_MrmAOX/Loadings.csv" initW => nothing lower => 0 offsetStoch => 1.0f-6 Parsed args: scheduling => "adagrad" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 ####### Oja (Julia API) ####### Progress: 1%|▎ | ETA: 0:02:49 Progress: 1%|▍ | ETA: 0:03:09 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:02:30 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:02:38 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:03:27 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### Oja (Command line) ####### Parsed args: scheduling => "robbins-monro" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:06:33 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scheduling => "momentum" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:07:08 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scheduling => "nag" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:08:59 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scheduling => "adagrad" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:08:15 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 ####### SGD (Julia API) ####### Progress: 1%|▎ | ETA: 0:02:57 Progress: 1%|▍ | ETA: 0:03:45 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:03:57 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:04:18 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:04:27 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### SGD (Command line) ####### Parsed args: scheduling => "robbins-monro" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:06:24 Progress: 1%|▍ | ETA: 0:05:13 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scheduling => "momentum" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:07:03 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scheduling => "nag" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:09:44 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 Parsed args: scheduling => "adagrad" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:10:31 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 ####### CCIPCA (Julia API) ####### Progress: 1%|▎ | ETA: 0:02:04 Progress: 1%|▍ | ETA: 0:02:36 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### CCIPCA (Command line) ####### Parsed args: rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" pseudocount => 1.0f0 rowvarlist => "" colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-15 Progress: 1%|▎ | ETA: 0:09:35 Progress: 1%|▍ | ETA: 0:07:54 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 ####### RSGD (Julia API) ####### Progress: 1%|▎ | ETA: 0:16:52 Progress: 1%|▍ | ETA: 0:12:59 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 Progress: 1%|▎ | ETA: 0:04:18 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:05:39 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:04:42 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### RSGD (Command line) ####### Parsed args: scheduling => "robbins-monro" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:14:16 Progress: 1%|▍ | ETA: 0:10:34 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scheduling => "momentum" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:15:15 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scheduling => "nag" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:16:21 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scheduling => "adagrad" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:16:36 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 ####### SVRG (Julia API) ####### Progress: 1%|▎ | ETA: 0:05:03 Progress: 1%|▍ | ETA: 0:05:43 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:06:22 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:09:22 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:07:59 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 ####### SVRG (Command line) ####### Parsed args: scheduling => "robbins-monro" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:15:07 Progress: 1%|▍ | ETA: 0:12:03 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 Parsed args: scheduling => "momentum" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:17:40 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 Parsed args: scheduling => "nag" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:19:34 Progress: 100%|█████████████████████████████████████████| Time: 0:00:08 Parsed args: scheduling => "adagrad" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:19:08 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 ####### RSVRG (Julia API) ####### Progress: 1%|▎ | ETA: 0:04:28 Progress: 1%|▍ | ETA: 0:05:23 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:05:45 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:08:59 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:07:51 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 ####### RSVRG (Command line) ####### Parsed args: scheduling => "robbins-monro" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:22:56 Progress: 1%|▍ | ETA: 0:17:08 Progress: 100%|█████████████████████████████████████████| Time: 0:00:10 Parsed args: scheduling => "momentum" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:22:17 Progress: 100%|█████████████████████████████████████████| Time: 0:00:09 Parsed args: scheduling => "nag" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:25:04 Progress: 100%|█████████████████████████████████████████| Time: 0:00:10 Parsed args: scheduling => "adagrad" rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:25:30 Progress: 100%|█████████████████████████████████████████| Time: 0:00:10 ####### Orthogonal Iteration (Julia API) ####### Progress: 0%|▏ | ETA: 0:06:13 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### Orthogonal Iteration (Command line) ####### Parsed args: rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" pseudocount => 1.0f0 rowvarlist => "" colsumlist => "" upper => 1.0f38 cper => 1.0f0 scale => "ftt" numepoch => "3" expvar => 0.1f0 perm => false initV => nothing initW => nothing lower => 0 Progress: 0%|▏ | ETA: 0:22:34 Progress: 33%|█████████████▊ | ETA: 0:00:10 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 ####### Randomized Block Krylov Iteration (Julia API) ####### Progress: 0%|▏ | ETA: 0:00:48 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 Q' A Q' A' A svd(Q' A' A) Q*U ####### Randomized Block Krylov Iteration (Command line) ####### Parsed args: rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" pseudocount => 1.0f0 rowvarlist => "" colsumlist => "" upper => 1.0f38 cper => 1.0f0 scale => "ftt" numepoch => "3" expvar => 0.1f0 perm => false initV => nothing initW => nothing lower => 0 Progress: 0%|▏ | ETA: 0:25:48 Progress: 33%|█████████████▊ | ETA: 0:00:10 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 Q' A Q' A' A svd(Q' A' A) Q*U ####### ARNOLDI (Julia API) ####### Progress: 20%|████████▎ | ETA: 0:00:02 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 ####### ARNOLDI (Command line) ####### Parsed args: rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" pseudocount => 1.0f0 rowvarlist => "" colsumlist => "" cper => 1.0f0 scale => "ftt" numepoch => "3" expvar => 0.1f0 perm => false Progress: 67%|███████████████████████████▍ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 ####### LANCZOS (Julia API) ####### Progress: 20%|████████▎ | ETA: 0:00:00 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 ####### LANCZOS (Command line) ####### Parsed args: rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" pseudocount => 1.0f0 rowvarlist => "" colsumlist => "" cper => 1.0f0 scale => "ftt" numepoch => "3" expvar => 0.1f0 perm => false Progress: 67%|███████████████████████████▍ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 ####### HALKO (Julia API) ####### Random Projection : Y = A Ω Progress: 1%|▎ | ETA: 0:00:59 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 QR factorization : Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Calculation of small matrix : B = Q' A SVD with small matrix : svd(B) ####### HALKO (Command line) ####### Parsed args: rowmeanlist => "/tmp/jl_MrmAOX/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_MrmAOX" input => "/tmp/jl_DAoWZI/Data.zst" outdir => "/tmp/jl_MrmAOX" pseudocount => 1.0f0 rowvarlist => "" colsumlist => "" noversamples => 5 cper => 1.0f0 niter => 3 scale => "ftt" perm => false initV => nothing initW => nothing ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 580 running 1 of 1 signal (10): User defined signal 1 process_node! at ./../usr/share/julia/Compiler/src/ssair/ir.jl:1467 iterate_compact at ./../usr/share/julia/Compiler/src/ssair/ir.jl:1949 iterate at ./../usr/share/julia/Compiler/src/ssair/ir.jl:1871 [inlined] adce_pass! at ./../usr/share/julia/Compiler/src/ssair/passes.jl:2103 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1035 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1048 [inlined] optimize at ./../usr/share/julia/Compiler/src/optimize.jl:1021 jfptr_optimize_82797.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 finish_nocycle at ./../usr/share/julia/Compiler/src/typeinfer.jl:232 jfptr_finish_nocycle_84211.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4476 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1378 add_codeinsts_to_jit! at ./../usr/share/julia/Compiler/src/typeinfer.jl:1529 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1562 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1570 jfptr_typeinf_ext_toplevel_84463.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 jl_apply at /source/src/julia.h:2345 [inlined] jl_type_infer at /source/src/gf.c:462 jl_compile_method_internal at /source/src/gf.c:3306 _jl_invoke at /source/src/gf.c:3799 [inlined] ijl_apply_generic at /source/src/gf.c:4004 #halko#87 at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/halko.jl:38 halko at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/halko.jl:33 unknown function (ip: 0x7133de5c825f) at (unknown file) _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 main at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/bin/halko:71 unknown function (ip: 0x7133de5b1f4f) at (unknown file) _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 jl_apply at /source/src/julia.h:2345 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2848 _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 _include at ./loading.jl:2908 include at ./Base.jl:309 exec_options at ./client.jl:320 _start at ./client.jl:553 jfptr__start_63823.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 jl_apply at /source/src/julia.h:2345 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7133df981249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== Random Projection : Y = A Ω ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 189 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_47924.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 jl_apply at /source/src/julia.h:2345 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Progress: 1%|▎ | ETA: 0:07:32Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007133c5800010 Total snapshots: 367. Utilization: 100% ╎307 @Base/client.jl:553 _start() ╎ 307 @Base/client.jl:320 exec_options(opts::Base.JLOptions) ╎ 307 @Base/Base.jl:309 include(mod::Module, _path::String) ╎ 307 @Base/loading.jl:2908 _include(mapexpr::Function, mod::Module, _pat… ╎ 307 @Base/loading.jl:2848 include_string(mapexpr::typeof(identity), mo… ╎ 307 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 307 @OnlinePCA/bin/halko:71 main() ╎ ╎ 307 @OnlinePCA/…/halko.jl:33 kwcall(::@NamedTuple{input::String, sc… 306╎ ╎ 307 @OnlinePCA/…halko.jl:38 halko(; input::String, outdir::Nothing…  Progress: 100%|█████████████████████████████████████████| Time: 0:00:10 QR factorization : Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) Progress: 1%|▎ | ETA: 0:04:04 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Calculation of small matrix : B = Q' A SVD with small matrix : svd(B) ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_47924.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 jl_apply at /source/src/julia.h:2345 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007ea28e401870 Total snapshots: 436. Utilization: 0% ╎436 @Base/task.jl:1129 wait_forever() 435╎ 436 @Base/task.jl:1192 wait() ####### ALGORITHM971 (Julia API) ####### [189] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/test/test_algorithm971.jl:2 abstract_eval_value at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3014 [inlined] collect_argtypes at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3027 abstract_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3069 [inlined] abstract_eval_statement_expr at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3430 abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3805 [inlined] abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3762 [inlined] typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4311 jfptr_typeinf_local_81573.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4469 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1378 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1561 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1570 jfptr_typeinf_ext_toplevel_84463.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 jl_apply at /source/src/julia.h:2345 [inlined] jl_type_infer at /source/src/gf.c:462 jl_compile_method_internal at /source/src/gf.c:3306 _jl_invoke at /source/src/gf.c:3799 [inlined] ijl_apply_generic at /source/src/gf.c:4004 jl_apply at /source/src/julia.h:2345 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:896 #invokelatest_gr#236 at ./reflection.jl:0 [inlined] invokelatest_gr at ./reflection.jl:1325 [inlined] #handle_message_nothrow#2 at ./logging/logging.jl:432 handle_message_nothrow at ./logging/logging.jl:429 macro expansion at ./logging/logging.jl:417 [inlined] #warning_empty#40 at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 [inlined] warning_empty at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1360 [inlined] #print#5 at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:358 print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 [inlined] print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 [inlined] print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 _peek_report at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:94 unknown function (ip: 0x7f73fb32520f) at (unknown file) _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 jl_apply at /source/src/julia.h:2345 [inlined] jl_f_invokelatest at /source/src/builtins.c:877 profile_printing_listener at ./Base.jl:337 #start_profile_listener##0 at ./Base.jl:355 jfptr_YY.start_profile_listenerYY.YY.0_16685.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3807 [inlined] ijl_apply_generic at /source/src/gf.c:4004 jl_apply at /source/src/julia.h:2345 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 92622709 (Pool: 92621462; Big: 1247); GC: 68 PkgEval terminated after 2732.16s: test duration exceeded the time limit