Package evaluation of EcologicalNetworksDynamics on Julia 1.13.0-DEV.888 (0e1aa6c7eb*) started at 2025-07-23T06:28:17.489


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# Set-up
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Installing PkgEval dependencies (TestEnv)...

Set-up completed after 10.8s


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# Installation
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Installing EcologicalNetworksDynamics...
   Resolving package versions...
   Installed CommonWorldInvalidations ──────────── v1.0.0
   Installed Extents ───────────────────────────── v0.1.6
   Installed MKL_jll ───────────────────────────── v2025.2.0+0
   Installed AlmostBlockDiagonals ──────────────── v0.1.10
   Installed SIMDTypes ─────────────────────────── v0.1.0
   Installed Optim ─────────────────────────────── v1.13.2
   Installed OrderedCollections ────────────────── v1.8.1
   Installed BoundaryValueDiffEqShooting ───────── v1.9.0
   Installed Functors ──────────────────────────── v0.5.2
   Installed PreallocationTools ────────────────── v0.4.29
   Installed EnzymeCore ────────────────────────── v0.8.12
   Installed OrdinaryDiffEqRosenbrock ──────────── v1.12.0
   Installed FastPower ─────────────────────────── v1.1.3
   Installed Sundials ──────────────────────────── v4.28.0
   Installed CpuId ─────────────────────────────── v0.3.1
   Installed BoundaryValueDiffEqFIRK ───────────── v1.9.0
   Installed Distances ─────────────────────────── v0.10.12
   Installed StaticArrayInterface ──────────────── v1.8.0
   Installed QuadGK ────────────────────────────── v2.11.2
   Installed NonlinearSolveSpectralMethods ─────── v1.2.0
   Installed OrdinaryDiffEqExponentialRK ───────── v1.5.0
   Installed NaNMath ───────────────────────────── v1.1.3
   Installed OpenSpecFun_jll ───────────────────── v0.5.6+0
   Installed NonlinearSolveBase ────────────────── v1.13.0
   Installed OrdinaryDiffEqFIRK ────────────────── v1.13.0
   Installed FastBroadcast ─────────────────────── v0.3.5
   Installed BoundaryValueDiffEqMIRKN ──────────── v1.8.0
   Installed DiffEqCallbacks ───────────────────── v4.8.0
   Installed Tables ────────────────────────────── v1.12.1
   Installed EnumX ─────────────────────────────── v1.0.5
   Installed OrdinaryDiffEqQPRK ────────────────── v1.1.0
   Installed NLSolversBase ─────────────────────── v7.10.0
   Installed LinearSolve ───────────────────────── v3.23.0
   Installed InverseFunctions ──────────────────── v0.1.17
   Installed BracketingNonlinearSolve ──────────── v1.3.0
   Installed Reexport ──────────────────────────── v1.2.2
   Installed OrdinaryDiffEqLowOrderRK ──────────── v1.3.0
   Installed DiffEqBase ────────────────────────── v6.178.0
   Installed JumpProcesses ─────────────────────── v9.16.1
   Installed BandedMatrices ────────────────────── v1.9.4
   Installed Preferences ───────────────────────── v1.4.3
   Installed NonlinearSolve ────────────────────── v4.10.0
   Installed Missings ──────────────────────────── v1.2.0
   Installed RegistryInstances ─────────────────── v0.1.0
   Installed MaybeInplace ──────────────────────── v0.1.4
   Installed TableTraits ───────────────────────── v1.0.1
   Installed Static ────────────────────────────── v1.2.0
   Installed Jieko ─────────────────────────────── v0.2.1
   Installed LaTeXStrings ──────────────────────── v1.4.0
   Installed SortingAlgorithms ─────────────────── v1.2.1
   Installed Crayons ───────────────────────────── v4.1.1
   Installed LevyArea ──────────────────────────── v1.0.0
   Installed UnPack ────────────────────────────── v1.0.2
   Installed RecursiveArrayTools ───────────────── v3.35.0
   Installed OrdinaryDiffEqNordsieck ───────────── v1.1.0
   Installed OrdinaryDiffEqLinear ──────────────── v1.3.0
   Installed ADTypes ───────────────────────────── v1.15.0
   Installed OrdinaryDiffEqAdamsBashforthMoulton ─ v1.2.0
   Installed Inflate ───────────────────────────── v0.1.5
   Installed MacroTools ────────────────────────── v0.5.16
   Installed DataStructures ────────────────────── v0.18.22
   Installed URIs ──────────────────────────────── v1.6.1
   Installed GenericSchur ──────────────────────── v0.5.5
   Installed DiffResults ───────────────────────── v1.1.0
   Installed OpenSSH_jll ───────────────────────── v10.0.1+0
   Installed ManualMemory ──────────────────────── v0.1.8
   Installed AbstractTrees ─────────────────────── v0.4.5
   Installed FillArrays ────────────────────────── v1.13.0
   Installed oneTBB_jll ────────────────────────── v2022.0.0+0
   Installed CodecZlib ─────────────────────────── v0.7.8
   Installed ArnoldiMethod ─────────────────────── v0.4.0
   Installed StatsBase ─────────────────────────── v0.34.5
   Installed SciMLJacobianOperators ────────────── v0.1.8
   Installed IntelOpenMP_jll ───────────────────── v2025.2.0+0
   Installed CEnum ─────────────────────────────── v0.5.0
   Installed SparseMatrixColorings ─────────────── v0.4.21
   Installed ExprTools ─────────────────────────── v0.1.10
   Installed ArrayInterface ────────────────────── v7.19.0
   Installed RandomNumbers ─────────────────────── v1.6.0
   Installed DataValueInterfaces ───────────────── v1.0.0
   Installed BoundaryValueDiffEq ───────────────── v5.18.0
   Installed CommonSubexpressions ──────────────── v0.3.1
   Installed LayoutPointers ────────────────────── v0.1.17
   Installed Expat_jll ─────────────────────────── v2.6.5+0
   Installed LoggingExtras ─────────────────────── v1.1.0
   Installed SparseConnectivityTracer ──────────── v1.0.0
   Installed GPUArraysCore ─────────────────────── v0.2.0
   Installed IrrationalConstants ───────────────── v0.2.4
   Installed SimpleTraits ──────────────────────── v0.9.4
   Installed BitFlags ──────────────────────────── v0.1.9
   Installed ArrayLayouts ──────────────────────── v1.11.2
   Installed HTTP ──────────────────────────────── v1.10.17
   Installed ConcreteStructs ───────────────────── v0.2.3
   Installed IOCapture ─────────────────────────── v0.2.5
   Installed Setfield ──────────────────────────── v1.1.2
   Installed SimpleBufferStream ────────────────── v1.2.0
   Installed TruncatedStacktraces ──────────────── v1.4.0
   Installed PDMats ────────────────────────────── v0.11.35
   Installed OrdinaryDiffEqPRK ─────────────────── v1.1.0
   Installed OrdinaryDiffEqRKN ─────────────────── v1.2.0
   Installed OrdinaryDiffEqStabilizedIRK ───────── v1.3.0
   Installed Moshi ─────────────────────────────── v0.3.7
   Installed NonlinearSolveQuasiNewton ─────────── v1.7.0
   Installed SteadyStateDiffEq ─────────────────── v2.5.0
   Installed OrdinaryDiffEqExtrapolation ───────── v1.5.0
   Installed DocStringExtensions ───────────────── v0.9.5
   Installed ResettableStacks ──────────────────── v1.1.1
   Installed CompositionsBase ──────────────────── v0.1.2
   Installed OrdinaryDiffEqHighOrderRK ─────────── v1.2.0
   Installed Rmath_jll ─────────────────────────── v0.5.1+0
   Installed CommonSolve ───────────────────────── v0.2.4
   Installed ForwardDiff ───────────────────────── v1.0.1
   Installed DifferentiationInterface ──────────── v0.7.3
   Installed SimpleUnPack ──────────────────────── v1.1.0
   Installed Sundials_jll ──────────────────────── v5.2.3+0
   Installed AliasTables ───────────────────────── v1.1.3
   Installed BitTwiddlingConvenienceFunctions ──── v0.1.6
   Installed ConcurrentUtilities ───────────────── v2.5.0
   Installed BoundaryValueDiffEqMIRK ───────────── v1.9.0
   Installed IteratorInterfaceExtensions ───────── v1.0.0
   Installed FunctionWrappersWrappers ──────────── v0.1.3
   Installed OrdinaryDiffEqStabilizedRK ────────── v1.2.0
   Installed LineSearch ────────────────────────── v0.1.4
   Installed SciMLOperators ────────────────────── v1.3.1
   Installed RecipesBase ───────────────────────── v1.3.4
   Installed DataAPI ───────────────────────────── v1.16.0
   Installed Mangal ────────────────────────────── v0.5.1
   Installed Krylov ────────────────────────────── v0.10.1
   Installed Documenter ────────────────────────── v1.14.1
   Installed OrdinaryDiffEq ────────────────────── v6.101.0
   Installed StaticArrays ──────────────────────── v1.9.14
   Installed StaticArraysCore ──────────────────── v1.4.3
   Installed FastGaussQuadrature ───────────────── v1.0.2
   Installed OrdinaryDiffEqBDF ─────────────────── v1.7.0
   Installed StringManipulation ────────────────── v0.4.1
   Installed Requires ──────────────────────────── v1.3.1
   Installed SciMLStructures ───────────────────── v1.7.0
   Installed StringCases ───────────────────────── v0.1.0
   Installed OrdinaryDiffEqDifferentiation ─────── v1.10.1
   Installed OrdinaryDiffEqSymplecticRK ────────── v1.3.0
   Installed FunctionWrappers ──────────────────── v1.1.3
   Installed OrdinaryDiffEqNonlinearSolve ──────── v1.11.0
   Installed DiffRules ─────────────────────────── v1.15.1
   Installed LogExpFunctions ───────────────────── v0.3.29
   Installed DifferentialEquations ─────────────── v7.16.1
   Installed OrdinaryDiffEqLowStorageRK ────────── v1.3.0
   Installed Git_jll ───────────────────────────── v2.50.1+0
   Installed OrdinaryDiffEqCore ────────────────── v1.26.2
   Installed JSON ──────────────────────────────── v0.21.4
   Installed Parsers ───────────────────────────── v2.8.3
   Installed PrettyTables ──────────────────────── v2.4.0
   Installed NonlinearSolveFirstOrder ──────────── v1.6.0
   Installed FastClosures ──────────────────────── v0.3.2
   Installed OrdinaryDiffEqExplicitRK ──────────── v1.1.0
   Installed SciMLBase ─────────────────────────── v2.104.0
   Installed Rmath ─────────────────────────────── v0.8.0
   Installed FiniteDiff ────────────────────────── v2.27.0
   Installed GeoFormatTypes ────────────────────── v0.4.4
   Installed Distributions ─────────────────────── v0.25.120
   Installed CloseOpenIntervals ────────────────── v0.1.13
   Installed BoundaryValueDiffEqCore ───────────── v1.11.1
   Installed BoundaryValueDiffEqAscher ─────────── v1.8.0
   Installed TestItems ─────────────────────────── v1.0.0
   Installed StatsFuns ─────────────────────────── v1.5.0
   Installed Polyester ─────────────────────────── v0.7.18
   Installed OrdinaryDiffEqFeagin ──────────────── v1.1.0
   Installed JLLWrappers ───────────────────────── v1.7.0
   Installed ThreadingUtilities ────────────────── v0.5.5
   Installed OrdinaryDiffEqIMEXMultistep ───────── v1.4.0
   Installed Accessors ─────────────────────────── v0.1.42
   Installed OrdinaryDiffEqDefault ─────────────── v1.5.0
   Installed OrdinaryDiffEqSSPRK ───────────────── v1.3.0
   Installed OrdinaryDiffEqSDIRK ───────────────── v1.4.0
   Installed OrdinaryDiffEqPDIRK ───────────────── v1.3.1
   Installed StochasticDiffEq ──────────────────── v6.80.0
   Installed Adapt ─────────────────────────────── v4.3.0
   Installed RuntimeGeneratedFunctions ─────────── v0.5.15
   Installed OrdinaryDiffEqVerner ──────────────── v1.3.0
   Installed Graphs ────────────────────────────── v1.13.0
   Installed ExponentialUtilities ──────────────── v1.27.0
   Installed ConstructionBase ──────────────────── v1.6.0
   Installed HypergeometricFunctions ───────────── v0.3.28
   Installed PoissonRandom ─────────────────────── v0.4.5
   Installed SymbolicIndexingInterface ─────────── v0.3.42
   Installed Random123 ─────────────────────────── v1.7.1
   Installed ExceptionUnwrapping ───────────────── v0.1.11
   Installed FastAlmostBandedMatrices ──────────── v0.1.5
   Installed Compat ────────────────────────────── v4.17.0
   Installed PositiveFactorizations ────────────── v0.2.4
   Installed TranscodingStreams ────────────────── v0.11.3
   Installed Statistics ────────────────────────── v1.11.1
   Installed PrecompileTools ───────────────────── v1.3.2
   Installed StatsAPI ──────────────────────────── v1.7.1
   Installed LazyArrays ────────────────────────── v2.6.1
   Installed OpenSSL ───────────────────────────── v1.5.0
   Installed MbedTLS ───────────────────────────── v1.1.9
   Installed TimerOutputs ──────────────────────── v0.5.29
   Installed MarkdownAST ───────────────────────── v0.1.2
   Installed StrideArraysCore ──────────────────── v0.5.7
   Installed CPUSummary ────────────────────────── v0.2.6
   Installed MatrixFactorizations ──────────────── v3.0.1
   Installed NLsolve ───────────────────────────── v4.5.1
   Installed DelayDiffEq ───────────────────────── v5.54.0
   Installed ChainRulesCore ────────────────────── v1.25.2
   Installed Parameters ────────────────────────── v0.12.3
   Installed ExproniconLite ────────────────────── v0.10.14
   Installed LazilyInitializedFields ───────────── v1.3.0
   Installed IfElse ────────────────────────────── v0.1.1
   Installed PtrArrays ─────────────────────────── v1.3.0
   Installed MuladdMacro ───────────────────────── v0.2.4
   Installed Git ───────────────────────────────── v1.4.0
   Installed Libiconv_jll ──────────────────────── v1.18.0+0
   Installed SimpleNonlinearSolve ──────────────── v2.7.0
   Installed LineSearches ──────────────────────── v7.4.0
   Installed MbedTLS_jll ───────────────────────── v2.28.6+2
   Installed DiffEqNoiseProcess ────────────────── v5.24.1
   Installed OrdinaryDiffEqTsit5 ───────────────── v1.2.0
   Installed Decimals ──────────────────────────── v0.4.1
   Installed SpecialFunctions ──────────────────── v2.5.1
   Installed GeoInterface ──────────────────────── v1.5.0
   Installed PolyesterWeave ────────────────────── v0.2.2
   Installed ANSIColoredPrinters ───────────────── v0.0.1
   Installed EcologicalNetworksDynamics ────────── v0.3.0
   Installed OrdinaryDiffEqFunctionMap ─────────── v1.2.0
  Installing 9 artifacts
   Installed artifact Rmath       121.9 KiB
   Installed artifact OpenSpecFun 194.9 KiB
   Installed artifact Expat       271.4 KiB
   Installed artifact oneTBB      435.6 KiB
   Installed artifact MbedTLS     2.1 MiB
   Installed artifact Sundials    2.1 MiB
   Installed artifact Libiconv    1.9 MiB
   Installed artifact OpenSSH     4.2 MiB
   Installed artifact Git         48.8 MiB
    Updating `~/.julia/environments/v1.13/Project.toml`
  [2fd9189a] + EcologicalNetworksDynamics v0.3.0
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [47edcb42] + ADTypes v1.15.0
  [a4c015fc] + ANSIColoredPrinters v0.0.1
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  [7d9f7c33] + Accessors v0.1.42
  [79e6a3ab] + Adapt v4.3.0
  [66dad0bd] + AliasTables v1.1.3
  [a95523ee] + AlmostBlockDiagonals v0.1.10
  [ec485272] + ArnoldiMethod v0.4.0
  [4fba245c] + ArrayInterface v7.19.0
  [4c555306] + ArrayLayouts v1.11.2
  [aae01518] + BandedMatrices v1.9.4
  [d1d4a3ce] + BitFlags v0.1.9
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.6
  [764a87c0] + BoundaryValueDiffEq v5.18.0
  [7227322d] + BoundaryValueDiffEqAscher v1.8.0
  [56b672f2] + BoundaryValueDiffEqCore v1.11.1
  [85d9eb09] + BoundaryValueDiffEqFIRK v1.9.0
  [1a22d4ce] + BoundaryValueDiffEqMIRK v1.9.0
  [9255f1d6] + BoundaryValueDiffEqMIRKN v1.8.0
  [ed55bfe0] + BoundaryValueDiffEqShooting v1.9.0
  [70df07ce] + BracketingNonlinearSolve v1.3.0
  [fa961155] + CEnum v0.5.0
  [2a0fbf3d] + CPUSummary v0.2.6
  [d360d2e6] + ChainRulesCore v1.25.2
  [fb6a15b2] + CloseOpenIntervals v0.1.13
  [944b1d66] + CodecZlib v0.7.8
  [38540f10] + CommonSolve v0.2.4
  [bbf7d656] + CommonSubexpressions v0.3.1
  [f70d9fcc] + CommonWorldInvalidations v1.0.0
  [34da2185] + Compat v4.17.0
  [a33af91c] + CompositionsBase v0.1.2
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  [f0e56b4a] + ConcurrentUtilities v2.5.0
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  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
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  [e2d170a0] + DataValueInterfaces v1.0.0
⌅ [abce61dc] + Decimals v0.4.1
  [bcd4f6db] + DelayDiffEq v5.54.0
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  [2fd9189a] + EcologicalNetworksDynamics v0.3.0
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  [460bff9d] + ExceptionUnwrapping v0.1.11
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  [86223c79] + Graphs v1.13.0
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⌅ [fb77eaff] + Sundials_jll v5.2.3+0
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  [3f19e933] + p7zip_jll v17.5.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 18.43s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
   5790.2 ms  ✓ TestEnv
  1 dependency successfully precompiled in 6 seconds. 26 already precompiled.

Precompiling package dependencies...

======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 242 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
wait at ./task.jl:1192
wait_forever at ./task.jl:1129
jfptr_wait_forever_47924.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3807 [inlined]
ijl_apply_generic at /source/src/gf.c:4004
jl_apply at /source/src/julia.h:2345 [inlined]
start_task at /source/src/task.c:1249
unknown function (ip: (nil)) at (unknown file)

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362
Overhead ╎ [+additional indent] Count File:Line  Function
=========================================================
Thread 1 (default) Task 0x000078607b673b20 Total snapshots: 433. Utilization: 0%
   ╎433 @Base/task.jl:1129  wait_forever()
432╎ 433 @Base/task.jl:1192  wait()


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 1 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
wait at ./task.jl:1192
wait_forever at ./task.jl:1129
jfptr_wait_forever_47924.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3807 [inlined]
ijl_apply_generic at /source/src/gf.c:4004
jl_apply at /source/src/julia.h:2345 [inlined]
start_task at /source/src/task.c:1249
unknown function (ip: (nil)) at (unknown file)

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362
Overhead ╎ [+additional indent] Count File:Line  Function
=========================================================
Thread 1 (default) Task 0x000071254ebb01f0 Total snapshots: 422. Utilization: 0%
   ╎422 @Base/task.jl:1129  wait_forever()
421╎ 422 @Base/task.jl:1192  wait()


[242] signal 15: Terminated
in expression starting at /PkgEval.jl/scripts/precompile.jl:37
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
wait at ./task.jl:1192
wait_forever at ./task.jl:1129
jfptr_wait_forever_47924.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3807 [inlined]
ijl_apply_generic at /source/src/gf.c:4004
jl_apply at /source/src/julia.h:2345 [inlined]
start_task at /source/src/task.c:1249
unknown function (ip: (nil)) at (unknown file)
Allocations: 11062430 (Pool: 11061341; Big: 1089); GC: 14

[1] signal 15: Terminated
in expression starting at /PkgEval.jl/scripts/evaluate.jl:152
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
wait at ./task.jl:1192
wait_forever at ./task.jl:1129
jfptr_wait_forever_47924.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3807 [inlined]
ijl_apply_generic at /source/src/gf.c:4004
jl_apply at /source/src/julia.h:2345 [inlined]
start_task at /source/src/task.c:1249
unknown function (ip: (nil)) at (unknown file)
Allocations: 22000491 (Pool: 21999581; Big: 910); GC: 35

PkgEval terminated after 2732.72s: test duration exceeded the time limit