Package evaluation of DANDIArchive on Julia 1.13.0-DEV.888 (0e1aa6c7eb*) started at 2025-07-22T14:45:22.969 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.5s ################################################################################ # Installation # Installing DANDIArchive... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [47d7f1a7] + DANDIArchive v0.51.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [992eb4ea] + CondaPkg v0.2.29 [47d7f1a7] + DANDIArchive v0.51.0 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [0f8b85d8] + JSON3 v1.14.3 [1914dd2f] + MacroTools v0.5.16 [0b3b1443] + MicroMamba v0.1.14 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [6099a3de] + PythonCall v0.9.26 [ae029012] + Requires v1.3.1 [6c6a2e73] + Scratch v1.3.0 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [e17b2a0c] + UnsafePointers v1.0.0 [f8abcde7] + micromamba_jll v1.5.8+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.14.1+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Installation completed after 1.26s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 77.23s ################################################################################ # Testing # Testing DANDIArchive Status `/tmp/jl_SDwVwI/Project.toml` [47d7f1a7] DANDIArchive v0.51.0 [f43a241f] Downloads v1.7.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_SDwVwI/Manifest.toml` [992eb4ea] CondaPkg v0.2.29 [47d7f1a7] DANDIArchive v0.51.0 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [0f8b85d8] JSON3 v1.14.3 [1914dd2f] MacroTools v0.5.16 [0b3b1443] MicroMamba v0.1.14 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [6099a3de] PythonCall v0.9.26 [ae029012] Requires v1.3.1 [6c6a2e73] Scratch v1.3.0 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [e17b2a0c] UnsafePointers v1.0.0 [f8abcde7] micromamba_jll v1.5.8+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [83775a58] Zlib_jll v1.3.1+2 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Testing Running tests... CondaPkg Found dependencies: /home/pkgeval/.julia/packages/DANDIArchive/B2vzr/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/avYrV/CondaPkg.toml CondaPkg Resolving changes + dandi + h5py + openssl + pynwb + python CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_SDwVwI/.CondaPkg ✔ Created /tmp/jl_SDwVwI/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_SDwVwI/.CondaPkg/pixi.toml │ [dependencies] │ pynwb = "*" │ h5py = "*" │ openssl = ">=3, <3.6" │ dandi = "==0.51" │ │ [dependencies.python] │ build = "*cpython*" │ channel = "conda-forge" │ version = ">=3.8,<4" │ │ [project] │ description = "automatically generated by CondaPkg.jl" │ name = ".CondaPkg" │ channel-priority = "strict" │ platforms = ["linux-64"] └ channels = ["conda-forge"] CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_SDwVwI/.CondaPkg/pixi.toml ✔ The default environment has been installed. ERROR: LoadError: InitError: Python: ModuleNotFoundError: No module named 'hdmf.array' Python stacktrace: [1] @ /tmp/jl_SDwVwI/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/hdmf_zarr/zarr_utils.py:14 [2] @ /tmp/jl_SDwVwI/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/hdmf_zarr/backend.py:24 [3] @ /tmp/jl_SDwVwI/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/hdmf_zarr/__init__.py:1 [4] @ /tmp/jl_SDwVwI/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/nwbinspector/_nwb_inspection.py:12 [5] @ /tmp/jl_SDwVwI/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/nwbinspector/__init__.py:6 [6] @ /tmp/jl_SDwVwI/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/dandi/files/bases.py:22 [7] @ /tmp/jl_SDwVwI/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/dandi/files/_private.py:17 [8] @ /tmp/jl_SDwVwI/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/dandi/files/__init__.py:23 [9] @ /tmp/jl_SDwVwI/.CondaPkg/.pixi/envs/default/lib/python3.11/site-packages/dandi/download.py:52 Stacktrace: [1] pythrow() @ PythonCall.Core ~/.julia/packages/PythonCall/avYrV/src/Core/err.jl:89 [2] errcheck @ ~/.julia/packages/PythonCall/avYrV/src/Core/err.jl:10 [inlined] [3] pyimport(m::String) @ PythonCall.Core ~/.julia/packages/PythonCall/avYrV/src/Core/builtins.jl:1560 [4] top-level scope @ none:1 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] EvalInto @ ./boot.jl:494 [inlined] [7] |> @ ./operators.jl:973 [inlined] [8] _broadcast_getindex_evalf @ ./broadcast.jl:701 [inlined] [9] _broadcast_getindex @ ./broadcast.jl:674 [inlined] [10] _getindex @ ./broadcast.jl:622 [inlined] [11] getindex @ ./broadcast.jl:618 [inlined] [12] copyto_nonleaf!(dest::Vector{PythonCall.Core.Py}, bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(|>), Tuple{Base.Broadcast.Extruded{Vector{Expr}, Tuple{Bool}, Tuple{Int64}}, Base.RefValue{Core.EvalInto}}}, iter::Base.OneTo{Int64}, state::Int64, count::Int64) @ Base.Broadcast ./broadcast.jl:1106 [13] copy @ ./broadcast.jl:943 [inlined] [14] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(|>), Tuple{Vector{Expr}, Base.RefValue{Core.EvalInto}}}) @ Base.Broadcast ./broadcast.jl:896 [15] __init__() @ DANDIArchive ~/.julia/packages/DANDIArchive/B2vzr/src/DANDIArchive.jl:14 [16] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1417 [17] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1405 [18] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1293 [19] _include_from_serialized @ ./loading.jl:1247 [inlined] [20] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2089 [21] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2602 [22] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2468 [23] macro expansion @ ./loading.jl:2396 [inlined] [24] macro expansion @ ./lock.jl:376 [inlined] [25] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [26] require @ ./loading.jl:2336 [inlined] [27] eval_import_path @ ./module.jl:36 [inlined] [28] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [29] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [30] top-level scope @ ~/.julia/packages/DANDIArchive/B2vzr/test/runtests.jl:1 [31] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [32] top-level scope @ none:6 [33] eval(m::Module, e::Any) @ Core ./boot.jl:489 [34] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [35] _start() @ Base ./client.jl:553 during initialization of module DANDIArchive in expression starting at /home/pkgeval/.julia/packages/DANDIArchive/B2vzr/test/runtests.jl:1 Testing failed after 77.11s ERROR: LoadError: Package DANDIArchive errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2661 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2510 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:309 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [12] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 226.08s: package tests unexpectedly errored