Package evaluation of BoundaryLayerDynamics on Julia 1.13.0-DEV.888 (0e1aa6c7eb*) started at 2025-07-22T19:03:07.533 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 12.08s ################################################################################ # Installation # Installing BoundaryLayerDynamics... Resolving package versions... Installed HDF5 ─ v0.16.16 Updating `~/.julia/environments/v1.13/Project.toml` [9d12ad70] + BoundaryLayerDynamics v1.0.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 ⌅ [79e6a3ab] + Adapt v3.7.2 ⌃ [4fba245c] + ArrayInterface v7.7.1 [9d12ad70] + BoundaryLayerDynamics v1.0.0 [34da2185] + Compat v4.17.0 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.5 [e2ba6199] + ExprTools v0.1.10 [7a1cc6ca] + FFTW v1.9.0 ⌅ [46192b85] + GPUArraysCore v0.1.5 ⌅ [f67ccb44] + HDF5 v0.16.16 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [da04e1cc] + MPI v0.20.22 [3da0fdf6] + MPIPreferences v0.1.11 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [eebad327] + PkgVersion v0.3.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [3cdcf5f2] + RecipesBase v1.3.4 ⌅ [731186ca] + RecursiveArrayTools v2.38.10 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 ⌅ [2efcf032] + SymbolicIndexingInterface v0.2.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [a759f4b9] + TimerOutputs v0.5.29 [f5851436] + FFTW_jll v3.3.11+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [477f73a3] + libaec_jll v1.1.3+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.14.1+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building HDF5 → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/114e20044677badbc631ee6fdc80a67920561a29/build.log` Installation completed after 19.59s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 32.42s ################################################################################ # Testing # Testing BoundaryLayerDynamics Status `/tmp/jl_oBKAQx/Project.toml` [9d12ad70] BoundaryLayerDynamics v1.0.0 ⌅ [f67ccb44] HDF5 v0.16.16 [da04e1cc] MPI v0.20.22 [a759f4b9] TimerOutputs v0.5.29 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_oBKAQx/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 ⌅ [79e6a3ab] Adapt v3.7.2 ⌃ [4fba245c] ArrayInterface v7.7.1 [9d12ad70] BoundaryLayerDynamics v1.0.0 [34da2185] Compat v4.17.0 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [7a1cc6ca] FFTW v1.9.0 ⌅ [46192b85] GPUArraysCore v0.1.5 ⌅ [f67ccb44] HDF5 v0.16.16 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [da04e1cc] MPI v0.20.22 [3da0fdf6] MPIPreferences v0.1.11 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [eebad327] PkgVersion v0.3.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [3cdcf5f2] RecipesBase v1.3.4 ⌅ [731186ca] RecursiveArrayTools v2.38.10 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 ⌅ [2efcf032] SymbolicIndexingInterface v0.2.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [a759f4b9] TimerOutputs v0.5.29 [f5851436] FFTW_jll v3.3.11+0 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.1+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [856f044c] MKL_jll v2025.2.0+0 [7cb0a576] MPICH_jll v4.3.1+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.8+0 [477f73a3] libaec_jll v1.1.3+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Testing BoundaryLayerDynamics.jl... (single process) Test Summary: | Pass Total Time Atmospheric Boundary Layer Simulations | 290 290 16m09.1s ─────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 985s / 98.4% 28.4GiB / 99.3% Section ncalls time %tot avg alloc %tot avg ─────────────────────────────────────────────────────────────────────────────────────────────── BoundaryLayerDynamics.jl Tests 1 969s 100.0% 969s 28.2GiB 100.0% 28.2GiB Advection 1 341s 35.2% 341s 4.81GiB 17.0% 4.81GiB Nonlinear Processes 28 234s 24.1% 8.36s 382MiB 1.3% 13.7MiB Resolved Advection 28 233s 24.0% 8.31s 357MiB 1.2% 12.8MiB Linear Processes 28 716μs 0.0% 25.6μs 17.1KiB 0.0% 624B Laminar Flows 1 138s 14.2% 138s 6.04GiB 21.4% 6.04GiB ABL Simulation 1 131s 13.5% 131s 5.58GiB 19.8% 5.58GiB LES 1 115s 11.8% 115s 2.71GiB 9.6% 2.71GiB Nonlinear Processes 2 38.3s 3.9% 19.1s 802MiB 2.8% 401MiB Static Smagorinsky SGS Model 2 27.6s 2.8% 13.8s 545MiB 1.9% 273MiB Linear Processes 2 59.3ms 0.0% 29.7ms 197KiB 0.0% 98.7KiB Pressure 1 65.0s 6.7% 65.0s 3.28GiB 11.6% 3.28GiB Projections 11 120ms 0.0% 11.0ms 3.32MiB 0.0% 309KiB Pressure Solver 11 120ms 0.0% 10.9ms 3.32MiB 0.0% 309KiB Logging 1 55.6s 5.7% 55.6s 1.48GiB 5.2% 1.48GiB ODE 1 37.1s 3.8% 37.1s 1.13GiB 4.0% 1.13GiB Output 1 29.9s 3.1% 29.9s 1.55GiB 5.5% 1.55GiB Transforms 1 28.8s 3.0% 28.8s 662MiB 2.3% 662MiB Diffusion 1 14.1s 1.5% 14.1s 570MiB 2.0% 570MiB Linear Processes 1 1.42s 0.1% 1.42s 11.5MiB 0.0% 11.5MiB Molecular Diffusion 3 1.42s 0.1% 473ms 11.5MiB 0.0% 3.83MiB Nonlinear Processes 1 219ms 0.0% 219ms 1.72MiB 0.0% 1.72MiB Derivatives 1 10.9s 1.1% 10.9s 388MiB 1.3% 388MiB Nonlinear Processes 1 3.25s 0.3% 3.25s 53.4MiB 0.2% 53.4MiB VorticityTest 1 2.59s 0.3% 2.59s 45.7MiB 0.2% 45.7MiB Linear Processes 1 21.2ms 0.0% 21.2ms 74.3KiB 0.0% 74.3KiB Grid 1 2.69s 0.3% 2.69s 55.1MiB 0.2% 55.1MiB ─────────────────────────────────────────────────────────────────────────────────────────────── PrecompilingPrecompilingPrecompilingPrecompiling packages...packages...packages...packages... SymbolicIndexingInterfaceSymbolicIndexingInterfaceSymbolicIndexingInterface Being precompiled by another process (pid: 178, pidfile: /home/pkgeval/.julia/compiled/v1.13/SymbolicIndexingInterface/nIEWT_gFADj.ji.pidfile) Being precompiled by another process (pid: 178, pidfile: /home/pkgeval/.julia/compiled/v1.13/SymbolicIndexingInterface/nIEWT_gFADj.ji.pidfile) Being precompiled by another process (pid: 178, pidfile: /home/pkgeval/.julia/compiled/v1.13/SymbolicIndexingInterface/nIEWT_gFADj.ji.pidfile) HDF5 Being precompiled by another process (pid: 176, pidfile: /home/pkgeval/.julia/compiled/v1.13/HDF5/L7Dga_gFADj.ji.pidfile) HDF5 Being precompiled by another process (pid: 176, pidfile: /home/pkgeval/.julia/compiled/v1.13/HDF5/L7Dga_gFADj.ji.pidfile) RecipesBase Being precompiled by another process (pid: 177, pidfile: /home/pkgeval/.julia/compiled/v1.13/RecipesBase/8e2Mm_gFADj.ji.pidfile) 6098.7 ms ✓ SymbolicIndexingInterface 5013.5 ms ✓ Adapt RecipesBase Being precompiled by another process (pid: 177, pidfile: /home/pkgeval/.julia/compiled/v1.13/RecipesBase/8e2Mm_gFADj.ji.pidfile) MPI Being precompiled by another process (pid: 175, pidfile: /home/pkgeval/.julia/compiled/v1.13/MPI/nO0XF_gFADj.ji.pidfile) HDF5 Being precompiled by another process (pid: 176, pidfile: /home/pkgeval/.julia/compiled/v1.13/HDF5/L7Dga_gFADj.ji.pidfile) 7786.9 ms ✓ ArrayInterface 5319.1 ms ✓ GPUArraysCore 28614.9 ms ✓ RecipesBase MPI Being precompiled by another process (pid: 175, pidfile: /home/pkgeval/.julia/compiled/v1.13/MPI/nO0XF_gFADj.ji.pidfile) 5972.4 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 5133.8 ms ✓ Adapt 35738.6 ms ✓ SymbolicIndexingInterface 7193.3 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 27504.6 ms ✓ RecipesBase 8622.6 ms ✓ ArrayInterface 6683.8 ms ✓ GPUArraysCore 15650.9 ms ? RecursiveArrayTools 6214.4 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 5275.0 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 71415.4 ms ✓ MPI 62504.8 ms ✓ MPI 12600.1 ms ✓ RecursiveArrayTools 44632.7 ms ✓ MPI 3449.5 ms ✓ Adapt 76912.2 ms ✓ SymbolicIndexingInterface 74912.8 ms ✓ RecipesBase 4388.4 ms ✓ ArrayInterface 3283.2 ms ✓ GPUArraysCore 3479.2 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 3422.6 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 8083.8 ms ✓ RecursiveArrayTools 97836.4 ms ✓ HDF5 87845.9 ms ✓ HDF5 9 dependencies successfully precompiled in 103 seconds. 69 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 1 dependency had output during precompilation: ┌ RecursiveArrayTools │ ┌ Warning: Module ArrayInterface with build ID fafbfcfd-6143-808a-9fed-d0655488ba13 is missing from the cache. │ │ This may mean ArrayInterface [4fba245c-0d91-5ea0-9b3e-6abc04ee57a9] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2616 └  98696.1 ms ✓ HDF5 10 dependencies successfully precompiled in 104 seconds. 69 already precompiled. 99298.9 ms ✓ HDF5 10 dependencies successfully precompiled in 104 seconds. 69 already precompiled. 24989.4 ms ✓ RecipesBase Precompiling packages... Precompiling packages... Precompiling packages... RecursiveArrayTools Being precompiled by another process (pid: 178, pidfile: /home/pkgeval/.julia/compiled/v1.13/RecursiveArrayTools/6B7tG_gFADj.ji.pidfile) RecursiveArrayTools Being precompiled by another process (pid: 178, pidfile: /home/pkgeval/.julia/compiled/v1.13/RecursiveArrayTools/6B7tG_gFADj.ji.pidfile) 24919.5 ms ✓ RecursiveArrayTools 1 dependency successfully precompiled in 27 seconds. 29 already precompiled. 23929.8 ms ✓ RecursiveArrayTools 1 dependency successfully precompiled in 26 seconds. 29 already precompiled. 21662.8 ms ✓ RecursiveArrayTools 1 dependency successfully precompiled in 25 seconds. 29 already precompiled. 54240.3 ms ✓ MPI 1450.0 ms ✓ Adapt 180483.7 ms ✓ SymbolicIndexingInterface 2262.9 ms ✓ ArrayInterface 1840.2 ms ✓ GPUArraysCore 1861.2 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1706.1 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 3914.9 ms ✓ RecursiveArrayTools 10 dependencies successfully precompiled in 195 seconds. 69 already precompiled. Fatal error in internal_Init_thread: Other MPI error, error stack: internal_Init_thread(71)...........: MPI_Init_thread(argc=(nil), argv=(nil), required=2, provided=0x7ffc0c8200e0) failed MPII_Init_thread(257)..............: MPID_Init(65)......................: init_world(169)....................: channel initialization failed MPIDI_CH3_Init(84).................: MPID_nem_init(314).................: MPID_nem_tcp_init(175).............: MPID_nem_tcp_get_business_card(400): GetSockInterfaceAddr(373)..........: gethostbyname failed, BoundaryLayerDynamics-primary-RT4lpI3C (errno 2) Fatal error in internal_Init_thread: Other MPI error, error stack: internal_Init_thread(71)...........: MPI_Init_thread(argc=(nil), argv=(nil), required=2, provided=0x7fffe1a3bf20) failed MPII_Init_thread(257)..............: MPID_Init(65)......................: init_world(169)....................: channel initialization failed MPIDI_CH3_Init(84).................: MPID_nem_init(314).................: MPID_nem_tcp_init(175).............: MPID_nem_tcp_get_business_card(400): GetSockInterfaceAddr(373)..........: gethostbyname failed, BoundaryLayerDynamics-primary-RT4lpI3C (errno 2) Error During MPI Tests (n=4) at /home/pkgeval/.julia/packages/BoundaryLayerDynamics/x9Zng/test/runtests.jl:47 Stacktrace: [1] top-level scope @ ~/.julia/packages/BoundaryLayerDynamics/x9Zng/test/runtests.jl:47 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [3] top-level scope @ none:6 [4] eval(m::Module, e::Any) @ Core ./boot.jl:489 [5] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [6] _start() @ Base ./client.jl:553 Testing failed after 1016.72s ERROR: LoadError: Package BoundaryLayerDynamics errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2661 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2510 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:309 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [12] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1314.27s: package tests unexpectedly errored