Package evaluation of BioMarkovChains on Julia 1.13.0-DEV.888 (0e1aa6c7eb*) started at 2025-07-22T12:28:02.344 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.76s ################################################################################ # Installation # Installing BioMarkovChains... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [f861b655] + BioMarkovChains v1.0.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [f861b655] + BioMarkovChains v1.0.0 [7e6ae17a] + BioSequences v3.5.0 [3c28c6f8] + BioSymbols v5.2.0 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [1e83bf80] + StaticArraysCore v1.4.3 [7200193e] + Twiddle v1.1.2 [2ef45bd6] + VectorizedKmers v0.9.2 [ade2ca70] + Dates v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 Installation completed after 3.75s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 22.44s ################################################################################ # Testing # Testing BioMarkovChains Status `/tmp/jl_qfxAYq/Project.toml` [4c88cf16] Aqua v0.8.13 [f861b655] BioMarkovChains v1.0.0 [7e6ae17a] BioSequences v3.5.0 [c3a54625] JET v0.10.6 [f8b46487] TestItemRunner v1.1.0 [1c621080] TestItems v1.0.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_qfxAYq/Manifest.toml` [4c88cf16] Aqua v0.8.13 [f861b655] BioMarkovChains v1.0.0 [7e6ae17a] BioSequences v3.5.0 [3c28c6f8] BioSymbols v5.2.0 [da1fd8a2] CodeTracking v1.3.9 [34da2185] Compat v4.17.0 [807dbc54] Compiler v0.1.1 [c3a54625] JET v0.10.6 [aa1ae85d] JuliaInterpreter v0.10.3 [70703baa] JuliaSyntax v1.0.2 [6f1432cf] LoweredCodeUtils v3.4.2 [1914dd2f] MacroTools v0.5.16 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [1e83bf80] StaticArraysCore v1.4.3 [f8b46487] TestItemRunner v1.1.0 [1c621080] TestItems v1.0.0 [7200193e] Twiddle v1.1.2 [2ef45bd6] VectorizedKmers v0.9.2 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [83775a58] Zlib_jll v1.3.1+2 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Testing Running tests... Code linting: JET-test failed at /home/pkgeval/.julia/packages/JET/z9poX/src/JETBase.jl:1055 Expression: (JET.report_package)(BioMarkovChains; toplevel_logger = nothing, target_defined_modules = true) ═════ 3 toplevel errors found ═════ ┌ @ /home/pkgeval/.julia/packages/BioMarkovChains/gANgD/src/BioMarkovChains.jl:27 │ ArgumentError: Package PrecompileTools not found in current path. │ - Run `import Pkg; Pkg.add("PrecompileTools")` to install the PrecompileTools package. │ Stacktrace: │ [1] macro expansion │ @ ./loading.jl:2377 [inlined] │ [2] macro expansion │ @ ./lock.jl:376 [inlined] │ [3] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2360 │ [4] require │ @ ./loading.jl:2336 [inlined] │ [5] eval_import_path │ @ ./module.jl:36 [inlined] │ [6] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [7] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) │ @ Base ./module.jl:101 └────────────────────── ┌ @ /home/pkgeval/.julia/packages/BioMarkovChains/gANgD/src/BioMarkovChains.jl:28 │ ArgumentError: Package VectorizedKmers not found in current path. │ - Run `import Pkg; Pkg.add("VectorizedKmers")` to install the VectorizedKmers package. │ Stacktrace: │ [1] macro expansion │ @ ./loading.jl:2377 [inlined] │ [2] macro expansion │ @ ./lock.jl:376 [inlined] │ [3] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2360 │ [4] require │ @ ./loading.jl:2336 [inlined] │ [5] eval_import_path │ @ ./module.jl:36 [inlined] │ [6] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [7] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) │ @ Base ./module.jl:101 └────────────────────── ┌ @ /home/pkgeval/.julia/packages/BioMarkovChains/gANgD/src/workload.jl:1 │ UndefVarError: `@setup_workload` not defined in `BioMarkovChains` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in PrecompileTools. └────────────────────── Test Summary: | Pass Fail Total Time Package | 12 1 13 5m60.0s test/runtests.jl | 12 1 13 5m60.0s tpm | 2 2 6.8s lorm | 1 1 1.7s Code quality | 9 9 3m07.2s Code linting | 1 1 2m44.2s ERROR: LoadError: Some tests did not pass: 12 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/BioMarkovChains/gANgD/test/runtests.jl:1 Testing failed after 422.45s ERROR: LoadError: Package BioMarkovChains errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2661 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2510 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:309 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [12] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 475.03s: package is using an unknown package