Package evaluation of StateSpaceDynamics on Julia 1.13.0-DEV.873 (be59b3b2f4*) started at 2025-07-18T00:58:17.358 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.73s ################################################################################ # Installation # Installing StateSpaceDynamics... Resolving package versions... Installed DiffResults ────────────── v1.1.0 Installed Rmath_jll ──────────────── v0.5.1+0 Installed Adapt ──────────────────── v4.3.0 Installed ConstructionBase ───────── v1.6.0 Installed ForwardDiff ────────────── v0.10.38 Installed MacroTools ─────────────── v0.5.16 Installed FillArrays ─────────────── v1.13.0 Installed DataStructures ─────────── v0.18.22 Installed HypergeometricFunctions ── v0.3.28 Installed OrderedCollections ─────── v1.8.1 Installed AliasTables ────────────── v1.1.3 Installed ArrayInterface ─────────── v7.19.0 Installed Compat ─────────────────── v4.17.0 Installed StatsBase ──────────────── v0.34.5 Installed DataAPI ────────────────── v1.16.0 Installed Optim ──────────────────── v1.13.2 Installed Statistics ─────────────── v1.11.1 Installed ProgressMeter ──────────── v1.10.4 Installed CommonSubexpressions ───── v0.3.1 Installed StaticArraysCore ───────── v1.4.3 Installed StatsAPI ───────────────── v1.7.1 Installed PositiveFactorizations ─── v0.2.4 Installed IrrationalConstants ────── v0.2.4 Installed StaticArrays ───────────── v1.9.14 Installed PrecompileTools ────────── v1.3.2 Installed OpenSpecFun_jll ────────── v0.5.6+0 Installed NaNMath ────────────────── v1.1.3 Installed QuadGK ─────────────────── v2.11.2 Installed DiffRules ──────────────── v1.15.1 Installed Requires ───────────────── v1.3.1 Installed ArrayLayouts ───────────── v1.11.1 Installed LogExpFunctions ────────── v0.3.29 Installed Rmath ──────────────────── v0.8.0 Installed Parameters ─────────────── v0.12.3 Installed FiniteDiff ─────────────── v2.27.0 Installed PtrArrays ──────────────── v1.3.0 Installed EnumX ──────────────────── v1.0.5 Installed StatsFuns ──────────────── v1.5.0 Installed NLSolversBase ──────────── v7.10.0 Installed Distributions ──────────── v0.25.120 Installed Reexport ───────────────── v1.2.2 Installed Setfield ───────────────── v1.1.2 Installed Missings ───────────────── v1.2.0 Installed JLLWrappers ────────────── v1.7.0 Installed Preferences ────────────── v1.4.3 Installed SpecialFunctions ───────── v2.5.1 Installed LineSearches ───────────── v7.4.0 Installed SortingAlgorithms ──────── v1.2.1 Installed UnPack ─────────────────── v1.0.2 Installed PDMats ─────────────────── v0.11.35 Installed ADTypes ────────────────── v1.15.0 Installed DocStringExtensions ────── v0.9.5 Installed DifferentiationInterface ─ v0.7.3 Installed StateSpaceDynamics ─────── v0.1.1 Installing 2 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.13/Project.toml` [19cf8126] + StateSpaceDynamics v0.1.1 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.15.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.19.0 [4c555306] + ArrayLayouts v1.11.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.17.0 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.3 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 ⌅ [f6369f11] + ForwardDiff v0.10.38 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [d3d80556] + LineSearches v7.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [19cf8126] + StateSpaceDynamics v0.1.1 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3a884ed6] + UnPack v1.0.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building StateSpaceDynamics → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0ec6b0fe096ace18afbae1bd8cfc34fe6bef7436/build.log` Installation completed after 11.79s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4620.3 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 26 already precompiled. Precompiling package dependencies... Precompilation completed after 628.97s ################################################################################ # Testing # Testing StateSpaceDynamics Status `/tmp/jl_aLY1Ik/Project.toml` [4c88cf16] Aqua v0.8.13 [336ed68f] CSV v0.10.15 [a2441757] Coverage v1.6.1 [a93c6f00] DataFrames v1.7.0 [31c24e10] Distributions v0.25.120 ⌅ [f6369f11] ForwardDiff v0.10.38 [98e50ef6] JuliaFormatter v2.1.2 [23992714] MAT v0.10.7 [429524aa] Optim v1.13.2 [276daf66] SpecialFunctions v2.5.1 [19cf8126] StateSpaceDynamics v0.1.1 [4c63d2b9] StatsFuns v1.5.0 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_aLY1Ik/Manifest.toml` [47edcb42] ADTypes v1.15.0 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.13 [4fba245c] ArrayInterface v7.19.0 [4c555306] ArrayLayouts v1.11.1 [d1d4a3ce] BitFlags v0.1.9 [e1450e63] BufferedStreams v1.2.2 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [a80b9123] CommonMark v0.9.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.17.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [a2441757] Coverage v1.6.1 [c36e975a] CoverageTools v1.3.2 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.3 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 ⌅ [f6369f11] ForwardDiff v0.10.38 [c27321d9] Glob v1.3.1 [f67ccb44] HDF5 v0.17.2 [cd3eb016] HTTP v1.10.17 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.4 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 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[8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time Package Wide Tests | 11 11 1m44.9s Test Summary: | Pass Total Time SLDS Tests | 4062 4062 1m48.1s Fitting LDS via EM... 6%|███ | ETA: 0:00:03 (27.64 ms/it) Fitting LDS via EM... 82%|█████████████████████████████████████████ | ETA: 0:00:00 ( 9.47 ms/it) Fitting LDS via EM... 98%|█████████████████████████████████████████████████ | ETA: 0:00:00 ( 9.39 ms/it) Fitting LDS via EM... 100%|██████████████████████████████████████████████████| Time: 0:00:00 ( 9.34 ms/it) Fitting LDS via EM... 5%|██▌ | ETA: 0:00:02 (20.68 ms/it) Fitting LDS via EM... 10%|█████ | ETA: 0:00:02 (20.82 ms/it) Fitting LDS via EM... 15%|███████▌ | ETA: 0:00:02 (22.99 ms/it) Fitting LDS via EM... 20%|██████████ | ETA: 0:00:02 (22.25 ms/it) Fitting LDS via EM... 25%|████████████▌ | ETA: 0:00:02 (21.83 ms/it) Fitting LDS via EM... 30%|███████████████ | ETA: 0:00:02 (22.67 ms/it) Fitting LDS via EM... 35%|█████████████████▌ | ETA: 0:00:01 (22.32 ms/it) Fitting LDS via EM... 40%|████████████████████ | ETA: 0:00:01 (22.06 ms/it) Fitting LDS via EM... 45%|██████████████████████▌ | ETA: 0:00:01 (22.42 ms/it) Fitting LDS via EM... 50%|█████████████████████████ | ETA: 0:00:01 (22.19 ms/it) Fitting LDS via EM... 55%|███████████████████████████▌ | ETA: 0:00:01 (22.47 ms/it) Fitting LDS via EM... 60%|██████████████████████████████ | ETA: 0:00:01 (22.30 ms/it) Fitting LDS via EM... 65%|████████████████████████████████▌ | ETA: 0:00:01 (22.14 ms/it) Fitting LDS via EM... 70%|███████████████████████████████████ | ETA: 0:00:01 (22.26 ms/it) Fitting LDS via EM... 75%|█████████████████████████████████████▌ | ETA: 0:00:01 (22.13 ms/it) Fitting LDS via EM... 80%|████████████████████████████████████████ | ETA: 0:00:00 (22.31 ms/it) Fitting LDS via EM... 85%|██████████████████████████████████████████▌ | ETA: 0:00:00 (22.19 ms/it) Fitting LDS via EM... 90%|█████████████████████████████████████████████ | ETA: 0:00:00 (22.09 ms/it) Fitting LDS via EM... 95%|███████████████████████████████████████████████▌ | ETA: 0:00:00 (22.15 ms/it) Fitting LDS via EM... 100%|██████████████████████████████████████████████████| Time: 0:00:02 (22.03 ms/it) Test Summary: | Pass Total Time GaussianLDS Tests | 66 66 1m54.2s WARNING: Method definition test_Gradient() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:78 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:68. WARNING: Method definition test_Hessian() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:94 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:84. WARNING: Method definition test_smooth() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:117 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:109. WARNING: Method definition test_initial_observation_parameter_updates() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:158 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:161. WARNING: Method definition test_initial_observation_parameter_updates(Int64) in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:158 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:161. WARNING: Method definition test_state_model_parameter_updates() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:195 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:198. WARNING: Method definition test_state_model_parameter_updates(Int64) in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:195 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:198. WARNING: Method definition test_EM() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:285 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:237. WARNING: Method definition test_EM(Int64) in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:285 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:237. Fitting Poisson LDS via LaPlaceEM... 2%|█ | ETA: 0:00:17 ( 0.17 s/it) Fitting Poisson LDS via LaPlaceEM... 6%|███ | ETA: 0:00:07 (76.16 ms/it) Fitting Poisson LDS via LaPlaceEM... 10%|█████ | ETA: 0:00:14 ( 0.15 s/it) Fitting Poisson LDS via LaPlaceEM... 13%|██████▌ | ETA: 0:00:11 ( 0.13 s/it) Fitting Poisson LDS via LaPlaceEM... 16%|████████ | ETA: 0:00:09 ( 0.11 s/it) Fitting Poisson LDS via LaPlaceEM... 20%|██████████ | ETA: 0:00:08 (95.46 ms/it) Fitting Poisson LDS via LaPlaceEM... 23%|███████████▌ | ETA: 0:00:07 (88.37 ms/it) Fitting Poisson LDS via LaPlaceEM... 25%|████████████▌ | ETA: 0:00:07 (86.81 ms/it) Fitting Poisson LDS via LaPlaceEM... 28%|██████████████ | ETA: 0:00:06 (81.85 ms/it) Fitting Poisson LDS via LaPlaceEM... 31%|███████████████▌ | ETA: 0:00:05 (77.29 ms/it) Fitting Poisson LDS via LaPlaceEM... 34%|█████████████████ | ETA: 0:00:05 (73.46 ms/it) Fitting Poisson LDS via LaPlaceEM... 37%|██████████████████▌ | ETA: 0:00:04 (71.03 ms/it) Fitting Poisson LDS via LaPlaceEM... 40%|████████████████████ | ETA: 0:00:04 (68.34 ms/it) Fitting Poisson LDS via LaPlaceEM... 43%|█████████████████████▌ | ETA: 0:00:04 (65.96 ms/it) Fitting Poisson LDS via LaPlaceEM... 46%|███████████████████████ | ETA: 0:00:03 (63.85 ms/it) Fitting Poisson LDS via LaPlaceEM... 49%|████████████████████████▌ | ETA: 0:00:03 (62.56 ms/it) Fitting Poisson LDS via LaPlaceEM... 52%|██████████████████████████ | ETA: 0:00:03 (61.05 ms/it) Fitting Poisson LDS via LaPlaceEM... 55%|███████████████████████████▌ | ETA: 0:00:03 (59.70 ms/it) Fitting Poisson LDS via LaPlaceEM... 58%|█████████████████████████████ | ETA: 0:00:02 (58.81 ms/it) Fitting Poisson LDS via LaPlaceEM... 61%|██████████████████████████████▌ | ETA: 0:00:02 (57.60 ms/it) Fitting Poisson LDS via LaPlaceEM... 64%|████████████████████████████████ | ETA: 0:00:02 (56.50 ms/it) Fitting Poisson LDS via LaPlaceEM... 67%|█████████████████████████████████▌ | ETA: 0:00:02 (55.87 ms/it) Fitting Poisson LDS via LaPlaceEM... 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87%|███████████████████████████████████████████▌ | ETA: 0:00:02 ( 0.14 s/it) Fitting Poisson LDS via LaPlaceEM... 88%|████████████████████████████████████████████ | ETA: 0:00:02 ( 0.14 s/it) Fitting Poisson LDS via LaPlaceEM... 89%|████████████████████████████████████████████▌ | ETA: 0:00:01 ( 0.14 s/it) Fitting Poisson LDS via LaPlaceEM... 90%|█████████████████████████████████████████████ | ETA: 0:00:01 ( 0.14 s/it) Fitting Poisson LDS via LaPlaceEM... 91%|█████████████████████████████████████████████▌ | ETA: 0:00:01 ( 0.14 s/it) Fitting Poisson LDS via LaPlaceEM... 92%|██████████████████████████████████████████████ | ETA: 0:00:01 ( 0.14 s/it) Fitting Poisson LDS via LaPlaceEM... 93%|██████████████████████████████████████████████▌ | ETA: 0:00:01 ( 0.14 s/it) Fitting Poisson LDS via LaPlaceEM... 94%|███████████████████████████████████████████████ | ETA: 0:00:01 ( 0.14 s/it) Fitting Poisson LDS via LaPlaceEM... 95%|███████████████████████████████████████████████▌ | ETA: 0:00:01 ( 0.14 s/it) Fitting Poisson LDS via LaPlaceEM... 96%|████████████████████████████████████████████████ | ETA: 0:00:01 ( 0.14 s/it) Fitting Poisson LDS via LaPlaceEM... 97%|████████████████████████████████████████████████▌ | ETA: 0:00:00 ( 0.14 s/it) Fitting Poisson LDS via LaPlaceEM... 98%|█████████████████████████████████████████████████ | ETA: 0:00:00 ( 0.14 s/it) Fitting Poisson LDS via LaPlaceEM... 99%|█████████████████████████████████████████████████▌| ETA: 0:00:00 ( 0.14 s/it) Fitting Poisson LDS via LaPlaceEM... 100%|██████████████████████████████████████████████████| Time: 0:00:13 ( 0.14 s/it) Test Summary: | Pass Total Time PoissonLDS Tests | 62 62 2m31.0s Running EM algorithm... 2%|█ | ETA: 0:02:36 ( 1.59 s/it) Running EM algorithm... 3%|█▌ | ETA: 0:01:49 ( 1.12 s/it) Running EM algorithm... 100%|██████████████████████████████████████████████████| Time: 0:00:03 (33.64 ms/it) ┌ Warning: User did not provide as many emmission models as the function expects (K=2). │ Filling in the rest with deep copies of the provided emission model. │ If this is not the desired behavior, specify all the emission models in the 'B=Vector{EmissionModel}' argument │ rather than 'emission' └ @ StateSpaceDynamics ~/.julia/packages/StateSpaceDynamics/zrsML/src/HiddenMarkovModels.jl:75 Test Summary: | Pass Total Time GaussianHMM Tests | 21 21 42.5s Running EM algorithm... 1%|▌ | ETA: 0:00:45 ( 0.23 s/it) Running EM algorithm... 2%|▊ | ETA: 0:00:43 ( 0.22 s/it) Running EM algorithm... 2%|█ | ETA: 0:00:42 ( 0.21 s/it) Running EM algorithm... 2%|█▎ | ETA: 0:00:41 ( 0.21 s/it) Running EM algorithm... 3%|█▌ | ETA: 0:00:41 ( 0.21 s/it) Running EM algorithm... 4%|█▊ | ETA: 0:00:40 ( 0.21 s/it) Running EM algorithm... 4%|██ | ETA: 0:00:39 ( 0.20 s/it) Running EM algorithm... 4%|██▎ | ETA: 0:00:41 ( 0.21 s/it) Running EM algorithm... 100%|██████████████████████████████████████████████████| Time: 0:00:01 ( 9.66 ms/it) Test Summary: | Pass Broken Total Time Switching Gaussian Regression Tests | 10 2 12 20.3s WARNING: Method definition sample_states(Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/HiddenMarkovModels/SwitchingGaussianRegression.jl:164 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/HiddenMarkovModels/SwitchingPoissonRegression.jl:124. Running EM algorithm... 1%|▌ | ETA: 0:02:11 ( 0.66 s/it) Running EM algorithm... 2%|▊ | ETA: 0:02:14 ( 0.68 s/it) Running EM algorithm... 2%|█ | ETA: 0:02:07 ( 0.65 s/it) Running EM algorithm... 2%|█▎ | ETA: 0:01:56 ( 0.60 s/it) Running EM algorithm... 3%|█▌ | ETA: 0:01:48 ( 0.56 s/it) Running EM algorithm... 4%|█▊ | ETA: 0:01:39 ( 0.52 s/it) Running EM algorithm... 4%|██ | ETA: 0:01:33 ( 0.49 s/it) Running EM algorithm... 4%|██▎ | ETA: 0:01:29 ( 0.47 s/it) Running EM algorithm... 5%|██▌ | ETA: 0:01:24 ( 0.44 s/it) Running EM algorithm... 6%|██▊ | ETA: 0:01:20 ( 0.42 s/it) Running EM algorithm... 6%|███ | ETA: 0:01:16 ( 0.40 s/it) Running EM algorithm... 6%|███▎ | ETA: 0:01:12 ( 0.39 s/it) Running EM algorithm... 7%|███▌ | ETA: 0:01:09 ( 0.37 s/it) Running EM algorithm... 8%|███▊ | ETA: 0:01:06 ( 0.36 s/it) Running EM algorithm... 8%|████ | ETA: 0:01:04 ( 0.35 s/it) Running EM algorithm... 8%|████▎ | ETA: 0:01:02 ( 0.34 s/it) Running EM algorithm... 9%|████▌ | ETA: 0:01:00 ( 0.33 s/it) Running EM algorithm... 10%|████▊ | ETA: 0:01:07 ( 0.37 s/it) Running EM algorithm... 10%|█████ | ETA: 0:01:05 ( 0.36 s/it) Running EM algorithm... 10%|█████▎ | ETA: 0:01:04 ( 0.36 s/it) Running EM algorithm... 11%|█████▌ | ETA: 0:01:03 ( 0.36 s/it) Running EM algorithm... 100%|██████████████████████████████████████████████████| Time: 0:00:07 (39.24 ms/it) Test Summary: | Pass Total Time Switching Poisson Regression Tests | 7 7 28.8s Running EM algorithm... 1%|▌ | ETA: 0:01:10 ( 0.35 s/it) Running EM algorithm... 2%|▊ | ETA: 0:01:18 ( 0.40 s/it) Running EM algorithm... 2%|█ | ETA: 0:01:22 ( 0.42 s/it) Running EM algorithm... 2%|█▎ | ETA: 0:01:22 ( 0.42 s/it) Running EM algorithm... 3%|█▌ | ETA: 0:01:22 ( 0.42 s/it) Running EM algorithm... 4%|█▊ | ETA: 0:01:21 ( 0.42 s/it) Running EM algorithm... 4%|██ | ETA: 0:01:20 ( 0.41 s/it) Running EM algorithm... 4%|██▎ | ETA: 0:01:18 ( 0.41 s/it) Running EM algorithm... 5%|██▌ | ETA: 0:01:17 ( 0.41 s/it) Running EM algorithm... 6%|██▊ | ETA: 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100%|██████████████████████████████████████████████████| Time: 0:00:13 (69.16 ms/it) Test Summary: | Pass Total Time Switching Bernoulli Regression Tests | 8 8 28.2s Iteration: 1, Log-likelihood: -18.420197906347713 Iteration: 2, Log-likelihood: -18.42019790634771 Convergence reached at iteration 2 Iteration: 1, Log-likelihood: -17.574492121149383 Iteration: 1, Log-likelihood: -16.54289537733556 Iteration: 1, Log-likelihood: -15.545460822429856 Iteration: 1, Log-likelihood: -15.03695160150654 Iteration: 1, Log-likelihood: -14.67608551995618 Iteration: 1, Log-likelihood: -14.419822374627294 Iteration: 1, Log-likelihood: -14.211407148804224 Iteration: 1, Log-likelihood: -13.849719386818103 Iteration: 1, Log-likelihood: -12.99692867178915 Iteration: 1, Log-likelihood: -11.858749290719349 Iteration: 1, Log-likelihood: -1410.3890434104903 Iteration: 2, Log-likelihood: -1410.345944184673 Iteration: 3, Log-likelihood: -1410.3281813162178 Iteration: 4, Log-likelihood: -1410.3207576591587 Iteration: 5, Log-likelihood: -1410.3175939608784 Iteration: 6, Log-likelihood: -1410.3161983330367 Iteration: 7, Log-likelihood: -1410.3155412439128 Convergence reached at iteration 7 Iteration: 1, Log-likelihood: -1411.1399107753048 Iteration: 1, Log-likelihood: -1410.9225829153652 Iteration: 1, Log-likelihood: -1410.827413912956 Iteration: 1, Log-likelihood: -1410.760101909889 Iteration: 1, Log-likelihood: -1410.7053215208532 Iteration: 1, Log-likelihood: -1410.659108365288 Iteration: 1, Log-likelihood: -1410.6195940531038 Iteration: 1, Log-likelihood: -1410.5855229423146 Iteration: 1, Log-likelihood: -1410.5559443548207 Iteration: 1, Log-likelihood: -1410.530110962685 Iteration: 1, Log-likelihood: -892.896613102367 Iteration: 2, Log-likelihood: -892.122878868696 Iteration: 3, Log-likelihood: -891.9678772709893 Iteration: 4, Log-likelihood: -891.9054393178176 Iteration: 5, Log-likelihood: -891.8682377864981 Iteration: 6, Log-likelihood: -891.8406692465404 Iteration: 7, Log-likelihood: -891.8182132377837 Iteration: 8, Log-likelihood: -891.7991955657872 Iteration: 9, Log-likelihood: -891.7827822346169 Iteration: 10, Log-likelihood: -891.768442966547 Iteration: 1, Log-likelihood: -896.3568702489905 Iteration: 1, Log-likelihood: -893.9408330691386 Iteration: 1, Log-likelihood: -893.0591743606725 Iteration: 1, Log-likelihood: -892.6784941603324 Iteration: 1, Log-likelihood: -892.4873565583898 Iteration: 1, Log-likelihood: -892.3771717021043 Iteration: 1, Log-likelihood: -892.304715171918 Iteration: 1, Log-likelihood: -892.251299821564 Iteration: 1, Log-likelihood: -892.208436059346 Iteration: 1, Log-likelihood: -892.172130120179 Test Summary: | Pass Total Time MixtureModels.jl Tests | 129 129 11.3s Test Summary: | Pass Total Time GaussianRegression Tests | 27 27 10.3s Test Summary: | Pass Total Time BernoulliRegression Tests | 24 24 8.1s Test Summary: | Pass Broken Total Time PoissonRegression Tests | 22 2 24 10.8s Test Summary: | Pass Total Time 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-0.6918632740594237 3.389221993149247 4.462966446171181 -2.8672832969917748 2.685773105078346 0.9291174864371362 -0.6467342005883577 1.6894415081349734 0.04409118889605633 4.112699986696434 1.2603712364312318 3.3476280880410867 0.5761750153545778 0.20687556322192996 1.3251416108219003 -1.403847223407897 -2.4488219895594185 1.27790277717705 -4.949109634062314 2.158988535017849 -4.799521668833384 -3.7979055163303004 -0.740139339712004 -0.7287632443856997]Test Summary: | Pass Total Time AutoRegressive HMM Tests | 10 10 7.8s Test Summary: | Pass Total Time Utilities.jl Tests | 76 76 7.2s Fitting Probabilistic PCA... 2%|▌ | ETA: 0:00:27 Fitting Probabilistic PCA... 100%|███████████████████████| Time: 0:00:00 Test Summary: | Pass Total Time PPCA Tests | 23 23 10.7s Running EM algorithm... 2%|█ | ETA: 0:01:01 ( 0.62 s/it) Running EM algorithm... 3%|█▌ | ETA: 0:00:54 ( 0.56 s/it) Running EM algorithm... 4%|██ | ETA: 0:00:50 ( 0.53 s/it) Running EM algorithm... 5%|██▌ | ETA: 0:00:48 ( 0.50 s/it) Running EM algorithm... 6%|███ | ETA: 0:00:46 ( 0.49 s/it) Running EM algorithm... 7%|███▌ | ETA: 0:00:44 ( 0.48 s/it) Running EM algorithm... 8%|████ | ETA: 0:00:43 ( 0.47 s/it) Running EM algorithm... 9%|████▌ | ETA: 0:00:42 ( 0.46 s/it) Running EM algorithm... 10%|█████ | ETA: 0:00:41 ( 0.46 s/it) Running EM algorithm... 11%|█████▌ | ETA: 0:00:41 ( 0.46 s/it) Running EM algorithm... 12%|██████ | ETA: 0:00:40 ( 0.45 s/it) Running EM algorithm... 13%|██████▌ | ETA: 0:00:39 ( 0.45 s/it) Running EM algorithm... 14%|███████ | ETA: 0:00:38 ( 0.45 s/it) Running EM algorithm... 15%|███████▌ | ETA: 0:00:38 ( 0.44 s/it) Running EM algorithm... 100%|██████████████████████████████████████████████████| Time: 0:00:06 (66.54 ms/it) Running EM algorithm... 2%|█ | ETA: 0:00:28 ( 0.28 s/it) Running EM algorithm... 5%|██▌ | ETA: 0:00:13 ( 0.14 s/it) Running EM algorithm... 8%|████ | ETA: 0:00:10 ( 0.11 s/it) Running EM algorithm... 11%|█████▌ | ETA: 0:00:08 (87.07 ms/it) Running EM algorithm... 14%|███████ | ETA: 0:00:07 (76.33 ms/it) Running EM algorithm... 100%|██████████████████████████████████████████████████| Time: 0:00:01 (11.82 ms/it) Test Summary: | Pass Total Time Viterbi and Class Probability Tests | 37 37 17.1s Testing StateSpaceDynamics tests passed Testing completed after 718.41s PkgEval succeeded after 1524.33s