Package evaluation of Stheno on Julia 1.13.0-DEV.868 (f2a8e18a98*) started at 2025-07-15T17:23:21.481 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.71s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.1 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.25.2 [34da2185] + Compat v4.17.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 3.87s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 31.71s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_IfrNyI/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.32 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_IfrNyI/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.1 [a9b6321e] Atomix v1.1.1 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.25.2 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.17.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.3 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.37 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.2 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.3.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.37+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 8944.3 ms ✓ Documenter 1 dependency successfully precompiled in 9 seconds. 29 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#281` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 19m24.2s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1183s / 98.4% 29.0GiB / 99.3% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 740s 63.6% 740s 20.2GiB 70.1% 20.2GiB addition 1 412s 35.4% 412s 11.7GiB 40.7% 11.7GiB Standardised Tests (correlated sum) 1 228s 19.6% 228s 6.39GiB 22.2% 6.39GiB adj_ad 9 25.1s 2.2% 2.79s 1.01GiB 3.5% 115MiB adj_fd 9 8.96s 0.8% 995ms 311MiB 1.1% 34.5MiB Standardised Tests (independent sum) 1 136s 11.7% 136s 5.02GiB 17.5% 5.02GiB adj_ad 9 26.2s 2.2% 2.91s 1.22GiB 4.2% 139MiB adj_fd 9 10.4s 0.9% 1.16s 295MiB 1.0% 32.8MiB Correlated GPs 1 45.4s 3.9% 45.4s 278MiB 0.9% 278MiB Consistency Tests 1 19.6s 1.7% 19.6s 122MiB 0.4% 122MiB Verify mean / kernel numerically 1 3.06s 0.3% 3.06s 41.4MiB 0.1% 41.4MiB Consistency Tests 1 1.82s 0.2% 1.82s 14.3MiB 0.0% 14.3MiB product 1 154s 13.2% 154s 3.90GiB 13.6% 3.90GiB multiply by function 1 89.7s 7.7% 89.7s 2.08GiB 7.2% 2.08GiB Diff Tests 1 49.8s 4.3% 49.8s 1.57GiB 5.5% 1.57GiB adj_ad 9 19.2s 1.6% 2.13s 865MiB 2.9% 96.1MiB adj_fd 9 6.10s 0.5% 677ms 110MiB 0.4% 12.3MiB Consistency Tests 1 6.25s 0.5% 6.25s 103MiB 0.4% 103MiB multiply by constant 1 63.8s 5.5% 63.8s 1.82GiB 6.3% 1.82GiB Diff Tests 1 47.7s 4.1% 47.7s 1.77GiB 6.2% 1.77GiB adj_ad 9 15.4s 1.3% 1.71s 790MiB 2.7% 87.8MiB adj_fd 9 10.2s 0.9% 1.14s 289MiB 1.0% 32.1MiB Consistency Tests 1 4.29s 0.4% 4.29s 19.4MiB 0.1% 19.4MiB GP mul errors 1 13.5ms 0.0% 13.5ms 40.0KiB 0.0% 40.0KiB compose 1 80.8s 6.9% 80.8s 2.32GiB 8.1% 2.32GiB general 1 48.8s 4.2% 48.8s 1.49GiB 5.2% 1.49GiB Diff Tests 1 42.7s 3.7% 42.7s 1.44GiB 5.0% 1.44GiB adj_ad 9 13.2s 1.1% 1.47s 700MiB 2.4% 77.8MiB adj_fd 9 5.41s 0.5% 602ms 109MiB 0.4% 12.1MiB Consistency Tests 1 4.74s 0.4% 4.74s 38.2MiB 0.1% 38.2MiB Stretch 1 26.1s 2.2% 26.1s 746MiB 2.5% 746MiB scalar stretch 1 25.3s 2.2% 25.3s 733MiB 2.5% 733MiB scalar input 1 24.5s 2.1% 24.5s 730MiB 2.5% 730MiB adj_fd 9 8.85s 0.8% 984ms 277MiB 0.9% 30.8MiB adj_ad 9 3.27s 0.3% 363ms 140MiB 0.5% 15.5MiB vector input 1 827ms 0.1% 827ms 3.19MiB 0.0% 3.19MiB Vector stretch 1 621ms 0.1% 621ms 9.45MiB 0.0% 9.45MiB Matrix stretch 1 133ms 0.0% 133ms 2.96MiB 0.0% 2.96MiB Shift 1 3.08s 0.3% 3.08s 39.4MiB 0.1% 39.4MiB Shift{Vector{Float64}} 1 1.66s 0.1% 1.66s 14.1MiB 0.0% 14.1MiB Shift{Float64} 1 1.42s 0.1% 1.42s 25.2MiB 0.1% 25.2MiB Select 1 1.60s 0.1% 1.60s 31.8MiB 0.1% 31.8MiB evaluation 1 713ms 0.1% 713ms 20.2MiB 0.1% 20.2MiB idx isa Vector 1 517ms 0.0% 517ms 7.68MiB 0.0% 7.68MiB idx isa Integer 1 369ms 0.0% 369ms 3.88MiB 0.0% 3.88MiB Periodic 1 1.19s 0.1% 1.19s 33.1MiB 0.1% 33.1MiB cross 1 31.3s 2.7% 31.3s 1.37GiB 4.8% 1.37GiB block arrays 1 17.0s 1.5% 17.0s 785MiB 2.7% 785MiB Stheno._collect ∘ _mortar 1 14.3s 1.2% 14.3s 660MiB 2.2% 660MiB BlockMatrix 1 7.60s 0.7% 7.60s 366MiB 1.2% 366MiB adj_fd 1 1.01s 0.1% 1.01s 111MiB 0.4% 111MiB adj_ad 1 59.7ms 0.0% 59.7ms 2.35MiB 0.0% 2.35MiB BlockVector 1 6.69s 0.6% 6.69s 294MiB 1.0% 294MiB adj_fd 1 835ms 0.1% 835ms 12.3MiB 0.0% 12.3MiB adj_ad 1 226ms 0.0% 226ms 15.6MiB 0.1% 15.6MiB fdm stuff 1 2.73s 0.2% 2.73s 125MiB 0.4% 125MiB Correctness tests 1 8.13s 0.7% 8.13s 387MiB 1.3% 387MiB Standardised Tests 1 6.13s 0.5% 6.13s 234MiB 0.8% 234MiB gp 1 198s 17.0% 198s 4.37GiB 15.2% 4.37GiB sparse gp 1 21.0s 1.8% 21.0s 380MiB 1.3% 380MiB SparseFiniteGP inference 1 15.6s 1.3% 15.6s 267MiB 0.9% 267MiB SparseFiniteGP methods 1 4.93s 0.4% 4.93s 108MiB 0.4% 108MiB SparseFiniteGP Constructors 1 399ms 0.0% 399ms 4.08MiB 0.0% 4.08MiB adj_ad 2 20.3s 1.7% 10.1s 820MiB 2.8% 410MiB gp 1 16.1s 1.4% 16.1s 257MiB 0.9% 257MiB GP 1 15.7s 1.4% 15.7s 254MiB 0.9% 254MiB independent GPs 1 341ms 0.0% 341ms 2.59MiB 0.0% 2.59MiB wrapped AbstractGP 1 12.5ms 0.0% 12.5ms 286KiB 0.0% 286KiB adj_fd 2 2.60s 0.2% 1.30s 41.0MiB 0.1% 20.5MiB derived_gp 1 163μs 0.0% 163μs 1.59KiB 0.0% 1.59KiB gaussian_process_probabilistic_programme 1 143s 12.3% 143s 2.26GiB 7.9% 2.26GiB Zygote 1 27.4s 2.4% 27.4s 0.97GiB 3.4% 0.97GiB nested gppp 1 16.5s 1.4% 16.5s 88.7MiB 0.3% 88.7MiB External Consistency 1 14.2s 1.2% 14.2s 93.1MiB 0.3% 93.1MiB split 1 664ms 0.1% 664ms 11.6MiB 0.0% 11.6MiB gppp macro 1 55.2ms 0.0% 55.2ms 567KiB 0.0% 567KiB doctests 1 74.8s 6.4% 74.8s 1.70GiB 5.9% 1.70GiB BlockData 1 7.31s 0.6% 7.31s 261MiB 0.9% 261MiB vcat(::GPPPInput...) 1 2.32s 0.2% 2.32s 100MiB 0.3% 100MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1209.55s PkgEval succeeded after 1277.06s