Package evaluation of SequencerJ on Julia 1.13.0-DEV.868 (f2a8e18a98*) started at 2025-07-15T16:49:50.921 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.95s ################################################################################ # Installation # Installing SequencerJ... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [348581b9] + SequencerJ v1.0.0 Updating `~/.julia/environments/v1.13/Manifest.toml` ⌅ [ec485272] + ArnoldiMethod v0.1.0 [da1fd8a2] + CodeTracking v1.3.9 [34da2185] + Compat v4.17.0 [807dbc54] + Compiler v0.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [8bb1440f] + DelimitedFiles v1.9.1 ⌅ [b4f34e82] + Distances v0.9.2 [ffbed154] + DocStringExtensions v0.9.5 ⌅ [aa1b3936] + GraphIO v0.5.0 ⌃ [86223c79] + Graphs v1.9.0 [d25df0c9] + Inflate v0.1.5 [92d709cd] + IrrationalConstants v0.2.4 [aa1ae85d] + JuliaInterpreter v0.10.3 [093fc24a] + LightGraphs v1.3.5 [2ab3a3ac] + LogExpFunctions v0.3.29 [6f1432cf] + LoweredCodeUtils v3.4.1 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 ⌅ [189a3867] + Reexport v0.2.0 [ae029012] + Requires v1.3.1 [295af30f] + Revise v3.8.0 [348581b9] + SequencerJ v1.0.0 [699a6c99] + SimpleTraits v0.9.4 [47aef6b3] + SimpleWeightedGraphs v1.5.0 [a2af1166] + SortingAlgorithms v1.2.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.14.1+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 1.24s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 508.18s ################################################################################ # Testing # Testing SequencerJ Status `/tmp/jl_zhJIBk/Project.toml` ⌅ [b4f34e82] Distances v0.9.2 ⌅ [aa1b3936] GraphIO v0.5.0 ⌅ [82e4d734] ImageIO v0.4.1 ⌃ [916415d5] Images v0.24.1 [093fc24a] LightGraphs v1.3.5 ⌃ [dca85d43] QuartzImageIO v0.7.3 ⌅ [189a3867] Reexport v0.2.0 [295af30f] Revise v3.8.0 [348581b9] SequencerJ v1.0.0 [47aef6b3] SimpleWeightedGraphs v1.5.0 ⌅ [2913bbd2] StatsBase v0.33.21 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_zhJIBk/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 ⌅ [ec485272] ArnoldiMethod v0.1.0 ⌃ [13072b0f] AxisAlgorithms v1.0.1 [39de3d68] AxisArrays v0.4.7 ⌅ [fa961155] CEnum v0.4.2 [aafaddc9] CatIndices v0.2.2 [d360d2e6] ChainRulesCore v1.25.2 [da1fd8a2] CodeTracking v1.3.9 ⌅ [3da002f7] ColorTypes v0.10.12 ⌅ [c3611d14] ColorVectorSpace v0.8.7 ⌅ [5ae59095] Colors v0.12.11 [34da2185] Compat v4.17.0 [807dbc54] Compiler v0.1.1 [ed09eef8] ComputationalResources v0.3.2 [150eb455] CoordinateTransformations v0.6.4 [dc8bdbbb] CustomUnitRanges v1.0.2 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 ⌅ [b4f34e82] Distances v0.9.2 [ffbed154] DocStringExtensions v0.9.5 [4f61f5a4] FFTViews v0.3.2 [7a1cc6ca] FFTW v1.9.0 [5789e2e9] FileIO v1.17.0 [53c48c17] FixedPointNumbers v0.8.5 ⌅ [aa1b3936] GraphIO v0.5.0 [a2bd30eb] Graphics v1.1.3 ⌃ [86223c79] Graphs v1.9.0 [bbac6d45] IdentityRanges v0.3.1 ⌃ [2803e5a7] ImageAxes v0.6.9 ⌃ [f332f351] ImageContrastAdjustment v0.3.7 ⌅ [a09fc81d] ImageCore v0.8.22 ⌃ [51556ac3] ImageDistances v0.2.13 ⌅ [6a3955dd] ImageFiltering v0.6.21 ⌅ [82e4d734] ImageIO v0.4.1 ⌃ [6218d12a] ImageMagick v1.2.1 ⌃ [bc367c6b] ImageMetadata v0.9.5 ⌅ [787d08f9] ImageMorphology v0.2.11 ⌅ [2996bd0c] ImageQualityIndexes v0.2.2 ⌃ [4e3cecfd] ImageShow v0.3.1 ⌅ [02fcd773] ImageTransformations v0.8.13 ⌃ [916415d5] Images v0.24.1 ⌅ [9b13fd28] IndirectArrays v0.5.1 [d25df0c9] Inflate v0.1.5 ⌅ [a98d9a8b] Interpolations v0.13.6 [8197267c] IntervalSets v0.7.11 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.0 [aa1ae85d] JuliaInterpreter v0.10.3 [093fc24a] LightGraphs v1.3.5 [2ab3a3ac] LogExpFunctions v0.3.29 [6f1432cf] LoweredCodeUtils v3.4.1 [1914dd2f] MacroTools v0.5.16 [dbb5928d] MappedArrays v0.4.2 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [77ba4419] NaNMath v1.1.3 ⌃ [f09324ee] Netpbm v1.0.1 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 ⌅ [f57f5aa1] PNGFiles v0.3.17 [5432bcbf] PaddedViews v0.5.12 [d96e819e] Parameters v0.12.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 ⌃ [dca85d43] QuartzImageIO v0.7.3 [94ee1d12] Quaternions v0.7.6 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [c1ae055f] RealDot v0.1.0 ⌅ [189a3867] Reexport v0.2.0 [ae029012] Requires v1.3.1 [295af30f] Revise v3.8.0 [6038ab10] Rotations v1.7.1 [348581b9] SequencerJ v1.0.0 [699a6c99] SimpleTraits v0.9.4 [47aef6b3] SimpleWeightedGraphs v1.5.0 [a2af1166] SortingAlgorithms v1.2.1 ⌅ [276daf66] SpecialFunctions v1.6.2 [cae243ae] StackViews v0.1.2 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 ⌅ [2913bbd2] StatsBase v0.33.21 ⌅ [06e1c1a7] TiledIteration v0.3.1 [3a884ed6] UnPack v1.0.2 ⌅ [efce3f68] WoodburyMatrices v0.5.6 [f5851436] FFTW_jll v3.3.11+0 [61579ee1] Ghostscript_jll v9.55.0+4 ⌅ [c73af94c] ImageMagick_jll v6.9.13025+0 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [aacddb02] JpegTurbo_jll v3.1.1+0 [88015f11] LERC_jll v4.0.1+0 [89763e89] Libtiff_jll v4.7.1+0 [d3a379c0] LittleCMS_jll v2.16.0+0 [856f044c] MKL_jll v2025.0.1+1 [643b3616] OpenJpeg_jll v2.5.4+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [ffd25f8a] XZ_jll v5.8.1+0 [b53b4c65] libpng_jll v1.6.50+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... Info Given SequencerJ was explicitly requested, output will be shown live  WARNING: Method definition bfs_parents(LightGraphs.AbstractGraph{T} where T, Integer) in module LightGraphs at /home/pkgeval/.julia/packages/LightGraphs/IgJif/src/traversals/bfs.jl:35 overwritten in module SequencerJ at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/src/bfs.jl:6. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 17112.4 ms ? SequencerJ WARNING: Method definition bfs_parents(LightGraphs.AbstractGraph{T} where T, Integer) in module LightGraphs at /home/pkgeval/.julia/packages/LightGraphs/IgJif/src/traversals/bfs.jl:35 overwritten in module SequencerJ at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/src/bfs.jl:6. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: Method definition bfs_parents(LightGraphs.AbstractGraph{T} where T, Integer) in module LightGraphs at /home/pkgeval/.julia/packages/LightGraphs/IgJif/src/traversals/bfs.jl:35 overwritten in module SequencerJ at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/src/bfs.jl:6. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(LightGraphs.bfs_parents), LightGraphs.AbstractGraph{T} where T, Integer) in module LightGraphs at /home/pkgeval/.julia/packages/LightGraphs/IgJif/src/traversals/bfs.jl:35 overwritten in module SequencerJ at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/src/bfs.jl:6. ┌ Warning: Replacing docs for `SequencerJ.EMD :: NTuple{4, Any}` in module `SequencerJ` └ @ Base.Docs docs/Docs.jl:253 ┌ Warning: Replacing docs for `SequencerJ.Energy :: NTuple{4, Any}` in module `SequencerJ` └ @ Base.Docs docs/Docs.jl:253 Precompiling packages... 6315.6 ms ✓ Interpolations 6941.0 ms ✓ FFTW 9699.7 ms ✓ SpecialFunctions 6234.8 ms ✓ PNGFiles 5304.1 ms ✓ ImageAxes 11448.4 ms ✓ ImageMagick 1489.9 ms ✓ FFTViews 8220.9 ms ✓ ColorVectorSpace 7621.8 ms ✓ ImageMorphology 10522.5 ms ✓ Netpbm 27336.5 ms ✓ ImageFiltering 8861.8 ms ✓ ImageTransformations 9460.8 ms ✓ ImageMetadata 7689.1 ms ✓ ImageDistances 10807.8 ms ✓ ImageContrastAdjustment 10062.4 ms ✓ ImageQualityIndexes Info Given Images was explicitly requested, output will be shown live  WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/y4lLj/src/Interpolations.jl:454 declares type variable N but does not use it. WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/y4lLj/src/Interpolations.jl:457 declares type variable N but does not use it. WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/y4lLj/src/gridded/gridded.jl:37 declares type variable pad but does not use it. WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/y4lLj/src/gridded/gridded.jl:60 declares type variable pad but does not use it. WARNING: method definition for interpolate! at /home/pkgeval/.julia/packages/Interpolations/y4lLj/src/deprecations.jl:30 declares type variable TWeights but does not use it. WARNING: Constructor for type "IndexStyle" was extended in `ImageTransformations` without explicit qualification or import.  NOTE: Assumed "IndexStyle" refers to `Base.IndexStyle`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function IndexStyle end`.  Hint: To silence the warning, qualify `IndexStyle` as `Base.IndexStyle` in the method signature or explicitly `import Base: IndexStyle`. WARNING: Constructor for type "Alg" was extended in `ImageFiltering` without explicit qualification or import.  NOTE: Assumed "Alg" refers to `Algorithm.Alg`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Alg end`.  Hint: To silence the warning, qualify `Alg` as `Algorithm.Alg` in the method signature or explicitly `import Algorithm: Alg`. 89855.3 ms ✓ Images 17 dependencies successfully precompiled in 239 seconds. 118 already precompiled. 4 dependencies had output during precompilation: ┌ ImageTransformations │ WARNING: Constructor for type "IndexStyle" was extended in `ImageTransformations` without explicit qualification or import. │ NOTE: Assumed "IndexStyle" refers to `Base.IndexStyle`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function IndexStyle end`. │ Hint: To silence the warning, qualify `IndexStyle` as `Base.IndexStyle` in the method signature or explicitly `import Base: IndexStyle`. └ ┌ ImageFiltering │ WARNING: Constructor for type "Alg" was extended in `ImageFiltering` without explicit qualification or import. │ NOTE: Assumed "Alg" refers to `Algorithm.Alg`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Alg end`. │ Hint: To silence the warning, qualify `Alg` as `Algorithm.Alg` in the method signature or explicitly `import Algorithm: Alg`. └ ┌ Interpolations │ WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/y4lLj/src/Interpolations.jl:454 declares type variable N but does not use it. │ WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/y4lLj/src/Interpolations.jl:457 declares type variable N but does not use it. │ WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/y4lLj/src/gridded/gridded.jl:37 declares type variable pad but does not use it. │ WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/y4lLj/src/gridded/gridded.jl:60 declares type variable pad but does not use it. │ WARNING: method definition for interpolate! at /home/pkgeval/.julia/packages/Interpolations/y4lLj/src/deprecations.jl:30 declares type variable TWeights but does not use it. └ ┌ Images │ [Output was shown above] └ ┌ Warning: _findmod is deprecated and will be removed. Use `Base.require(::Base.PkgId)` instead. │ caller = (::ImageIO.var"#checked_import##0#checked_import##1"{Symbol})() at ImageIO.jl:17 └ @ Core ~/.julia/packages/ImageIO/uPn5K/src/ImageIO.jl:17 WARNING: Detected access to binding `ImageIO.PNGFiles` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. Precompiling packages... 5109.4 ms ✓ ImageMagick_jll 11778.9 ms ✓ ImageMagick 2 dependencies successfully precompiled in 17 seconds. 55 already precompiled. Euclidean Distance Matrix: Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/algotests.jl:10 Test threw exception Expression: pairwise(Euclidean(), A, dims = 1) ≈ expected UndefVarError: `pairwise` not defined in `Main` Hint: It looks like two or more modules export different bindings with this name, resulting in ambiguity. Try explicitly importing it from a particular module, or qualifying the name with the module it should come from. Hint: a global variable of this name also exists in StatsAPI. - Also exported by StatsBase. Hint: a global variable of this name also exists in Distances. - Also exported by SequencerJ. - Also exported by ImageDistances. Stacktrace: [1] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/algotests.jl:6 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/algotests.jl:7 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [5] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/algotests.jl:10 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 [inlined] autoscale produces one integer result: Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:28 Test threw exception Expression: autoscale(A) isa Int MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::SubArray{Float64, 2, Matrix{Float64}, Tuple{Base.Slice{Base.OneTo{Int64}}, Vector{Int64}}, false}, scales::Int64, metrics::Tuple{Euclidean, EMD, KLDivergence, Energy}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] autoscale(A::Matrix{Float64}; scales::Vector{Int64}, metrics::Tuple{Euclidean, EMD, KLDivergence, Energy}, grid::Nothing, p::Float64) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:171 [7] autoscale(A::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:158 [8] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [10] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:27 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [12] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:28 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 [inlined] autoscale produces one integer result: Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:33 Test threw exception Expression: autoscale(A) isa Int MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::SubArray{Float64, 2, Matrix{Float64}, Tuple{Base.Slice{Base.OneTo{Int64}}, Vector{Int64}}, false}, scales::Int64, metrics::Tuple{Euclidean, EMD, KLDivergence, Energy}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] autoscale(A::Matrix{Float64}; scales::Vector{Int64}, metrics::Tuple{Euclidean, EMD, KLDivergence, Energy}, grid::Nothing, p::Float64) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:171 [7] autoscale(A::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:158 [8] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [10] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:32 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [12] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:33 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 [inlined] autoscale produces a Fibonacci number: Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:38 Test threw exception Expression: autoscale(A) ∈ SequencerJ.FIB MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::SubArray{Float64, 2, Matrix{Float64}, Tuple{Base.Slice{Base.OneTo{Int64}}, Vector{Int64}}, false}, scales::Int64, metrics::Tuple{Euclidean, EMD, KLDivergence, Energy}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] autoscale(A::Matrix{Float64}; scales::Vector{Int64}, metrics::Tuple{Euclidean, EMD, KLDivergence, Energy}, grid::Nothing, p::Float64) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:171 [7] autoscale(A::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:158 [8] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [10] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:37 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [12] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:38 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 [inlined] autoscale p=0.2: Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:43 Test threw exception Expression: autoscale(A; p = 0.2) ∈ SequencerJ.FIB MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::SubArray{Float64, 2, Matrix{Float64}, Tuple{Base.Slice{Base.OneTo{Int64}}, Vector{Int64}}, false}, scales::Int64, metrics::Tuple{Euclidean, EMD, KLDivergence, Energy}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] autoscale(A::Matrix{Float64}; scales::Vector{Int64}, metrics::Tuple{Euclidean, EMD, KLDivergence, Energy}, grid::Nothing, p::Float64) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:171 [7] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [9] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:42 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [11] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:43 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 [inlined] ┌ Info: Sequencing data with │ shape: (45, 45) │ metric(s): (Euclidean(1.0e-7), EMD(nothing), KLDivergence(), Energy(nothing)) └ scale(s): [2] real image does not fail.: Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:57 Test threw exception Expression: sequence(SMALL; scales = [2]) !== nothing MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::Matrix{Float32}, scales::Tuple{Int64}, metrics::Tuple{Euclidean, EMD, KLDivergence, Energy}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] sequence(A::Matrix{Float32}; scales::Vector{Int64}, metrics::Tuple{Euclidean, EMD, KLDivergence, Energy}, grid::Nothing) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:144 [7] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [9] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:57 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [11] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:57 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 [inlined] ┌ Info: Sequencing data with │ shape: (45, 45) │ metric(s): (Euclidean(1.0e-7), EMD(nothing), KLDivergence(), Energy(nothing)) └ scale(s): [2] small image does not fail.: Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:61 Test threw exception Expression: sequence(SMALL; scales = [2]) !== nothing MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::Matrix{Float32}, scales::Tuple{Int64}, metrics::Tuple{Euclidean, EMD, KLDivergence, Energy}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] sequence(A::Matrix{Float32}; scales::Vector{Int64}, metrics::Tuple{Euclidean, EMD, KLDivergence, Energy}, grid::Nothing) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:144 [7] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [9] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:61 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [11] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:61 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 [inlined] ┌ Info: Sequencing data with │ shape: (45, 45) │ metric(s): (Euclidean(1.0e-7), EMD(nothing), KLDivergence(), Energy(nothing)) └ scale(s): [1, 2, 8] small image, multiple scales.: Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:65 Test threw exception Expression: sequence(SMALL; scales = [1, 2, 8]) !== nothing MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::Matrix{Float32}, scales::Tuple{Int64, Int64, Int64}, metrics::Tuple{Euclidean, EMD, KLDivergence, Energy}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] sequence(A::Matrix{Float32}; scales::Vector{Int64}, metrics::Tuple{Euclidean, EMD, KLDivergence, Energy}, grid::Nothing) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:144 [7] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [9] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:65 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [11] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:65 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 [inlined] ┌ Info: Sequencing data with │ shape: (427, 640) │ metric(s): (KLDivergence(), EMD(nothing)) └ scale(s): [2] large image does not fail.: Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:69 Test threw exception Expression: sequence(BIG; scales = [2], metrics = (KLD, WASS1D)) !== nothing MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::Matrix{Float32}, scales::Tuple{Int64}, metrics::Tuple{KLDivergence, EMD}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] sequence(A::Matrix{Float32}; scales::Vector{Int64}, metrics::Tuple{KLDivergence, EMD}, grid::Nothing) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:144 [7] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [9] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:69 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [11] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:69 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 [inlined] ┌ Info: Sequencing data with │ shape: (45, 45) │ metric(s): (Euclidean(1.0e-7), EMD(nothing), KLDivergence(), Energy(nothing)) └ scale(s): 1 reorder small image, scale=1: Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:72 Got exception outside of a @test MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::Matrix{Float32}, scales::Tuple{Int64}, metrics::Tuple{Euclidean, EMD, KLDivergence, Energy}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] sequence(A::Matrix{Float32}; scales::Int64, metrics::Tuple{Euclidean, EMD, KLDivergence, Energy}, grid::Nothing) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:144 [7] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [9] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:73 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [11] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:75 [inlined] [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [16] _start() @ Base ./client.jl:553 ┌ Info: Sequencing data with │ shape: (45, 45) │ metric(s): (Euclidean(1.0e-7), EMD(nothing), KLDivergence(), Energy(nothing)) └ scale(s): nothing reorder small image, autoscale: Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:84 Got exception outside of a @test MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::SubArray{Float32, 2, Matrix{Float32}, Tuple{Base.Slice{Base.OneTo{Int64}}, Vector{Int64}}, false}, scales::Int64, metrics::Tuple{Euclidean, EMD, KLDivergence, Energy}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] autoscale(A::Matrix{Float32}; scales::Vector{Int64}, metrics::Tuple{Euclidean, EMD, KLDivergence, Energy}, grid::Vector{Float64}, p::Float64) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:171 [7] autoscale @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:158 [inlined] [8] #9 @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:138 [inlined] [9] with_logstate(f::SequencerJ.var"#9#10"{Tuple{Euclidean, EMD, KLDivergence, Energy}, Matrix{Float32}, Vector{Float64}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:540 [10] with_logger @ ./logging/logging.jl:651 [inlined] [11] sequence(A::Matrix{Float32}; scales::Nothing, metrics::Tuple{Euclidean, EMD, KLDivergence, Energy}, grid::Nothing) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:137 [12] sequence(A::Matrix{Float32}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:105 [13] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [15] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:85 [inlined] [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [17] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:87 [inlined] [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [19] top-level scope @ none:6 [20] eval(m::Module, e::Any) @ Core ./boot.jl:489 [21] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [22] _start() @ Base ./client.jl:553 ┌ Info: Sequencing data with │ shape: (135, 76) │ metric(s): (KLDivergence(), Euclidean(1.0e-7)) └ scale(s): (1, 2) reorder med image, orig. portrait, scales=(1,2): Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:96 Got exception outside of a @test MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::Matrix{Float32}, scales::Tuple{Int64, Int64}, metrics::Tuple{KLDivergence, Euclidean}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] sequence(A::Matrix{Float32}; scales::Tuple{Int64, Int64}, metrics::Tuple{KLDivergence, Euclidean}, grid::Nothing) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:144 [7] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [9] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:97 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [11] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:99 [inlined] [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [16] _start() @ Base ./client.jl:553 ┌ Info: Sequencing data with │ shape: (135, 76) │ metric(s): (KLDivergence(), Euclidean(1.0e-7)) └ scale(s): nothing reorder med image, orig. portrait, autoscale: Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:108 Got exception outside of a @test MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::SubArray{Float32, 2, Matrix{Float32}, Tuple{Base.Slice{Base.OneTo{Int64}}, Vector{Int64}}, false}, scales::Int64, metrics::Tuple{KLDivergence, Euclidean}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] autoscale(A::Matrix{Float32}; scales::Vector{Int64}, metrics::Tuple{KLDivergence, Euclidean}, grid::Vector{Float64}, p::Float64) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:171 [7] autoscale @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:158 [inlined] [8] #9 @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:138 [inlined] [9] with_logstate(f::SequencerJ.var"#9#10"{Tuple{KLDivergence, Euclidean}, Matrix{Float32}, Vector{Float64}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:540 [10] with_logger @ ./logging/logging.jl:651 [inlined] [11] sequence(A::Matrix{Float32}; scales::Nothing, metrics::Tuple{KLDivergence, Euclidean}, grid::Nothing) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:137 [12] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [14] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:109 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [16] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:111 [inlined] [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [18] top-level scope @ none:6 [19] eval(m::Module, e::Any) @ Core ./boot.jl:489 [20] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [21] _start() @ Base ./client.jl:553 ┌ Info: Sequencing data with │ shape: (76, 135) │ metric(s): (KLDivergence(), Euclidean(1.0e-7)) └ scale(s): (1, 2) reorder med image, landscape, scales=(1,2): Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:120 Got exception outside of a @test MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::Matrix{Float32}, scales::Tuple{Int64, Int64}, metrics::Tuple{KLDivergence, Euclidean}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] sequence(A::Matrix{Float32}; scales::Tuple{Int64, Int64}, metrics::Tuple{KLDivergence, Euclidean}, grid::Nothing) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:144 [7] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [9] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:121 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [11] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:124 [inlined] [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [16] _start() @ Base ./client.jl:553 ┌ Info: Sequencing data with │ shape: (135, 76) │ metric(s): (KLDivergence(), Euclidean(1.0e-7)) └ scale(s): nothing reorder med image, landscape, autoscale: Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:133 Got exception outside of a @test MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::SubArray{Float32, 2, Matrix{Float32}, Tuple{Base.Slice{Base.OneTo{Int64}}, Vector{Int64}}, false}, scales::Int64, metrics::Tuple{KLDivergence, Euclidean}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] autoscale(A::Matrix{Float32}; scales::Vector{Int64}, metrics::Tuple{KLDivergence, Euclidean}, grid::Vector{Float64}, p::Float64) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:171 [7] autoscale @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:158 [inlined] [8] #9 @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:138 [inlined] [9] with_logstate(f::SequencerJ.var"#9#10"{Tuple{KLDivergence, Euclidean}, Matrix{Float32}, Vector{Float64}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:540 [10] with_logger @ ./logging/logging.jl:651 [inlined] [11] sequence(A::Matrix{Float32}; scales::Nothing, metrics::Tuple{KLDivergence, Euclidean}, grid::Nothing) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:137 [12] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [14] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:134 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [16] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:137 [inlined] [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [18] top-level scope @ none:6 [19] eval(m::Module, e::Any) @ Core ./boot.jl:489 [20] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [21] _start() @ Base ./client.jl:553 ┌ Info: Sequencing data with │ shape: (427, 640) │ metric(s): (Euclidean(1.0e-7), KLDivergence()) └ scale(s): (1, 2, 4) reorder large image, orig. landscape, scales=(1,2,4): Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:147 Got exception outside of a @test MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::Matrix{Float32}, scales::Tuple{Int64, Int64, Int64}, metrics::Tuple{Euclidean, KLDivergence}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] sequence(A::Matrix{Float32}; scales::Tuple{Int64, Int64, Int64}, metrics::Tuple{Euclidean, KLDivergence}, grid::Nothing) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:144 [7] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [9] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:148 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [11] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:150 [inlined] [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [16] _start() @ Base ./client.jl:553 ┌ Info: Sequencing data with │ shape: (427, 640) │ metric(s): (Euclidean(1.0e-7), KLDivergence()) └ scale(s): (1, 2, 4) reorder large image, orig. landscape, autoscale: Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:157 Got exception outside of a @test MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::Matrix{Float32}, scales::Tuple{Int64, Int64, Int64}, metrics::Tuple{Euclidean, KLDivergence}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] sequence(A::Matrix{Float32}; scales::Tuple{Int64, Int64, Int64}, metrics::Tuple{Euclidean, KLDivergence}, grid::Nothing) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:144 [7] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [9] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:158 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [11] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:160 [inlined] [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [16] _start() @ Base ./client.jl:553 ┌ Info: Sequencing data with │ shape: (640, 427) │ metric(s): (Euclidean(1.0e-7), KLDivergence()) └ scale(s): (1, 2, 4) reorder large image, portrait, scales=(1,2,4): Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:167 Got exception outside of a @test MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::Matrix{Float32}, scales::Tuple{Int64, Int64, Int64}, metrics::Tuple{Euclidean, KLDivergence}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] sequence(A::Matrix{Float32}; scales::Tuple{Int64, Int64, Int64}, metrics::Tuple{Euclidean, KLDivergence}, grid::Nothing) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:144 [7] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [9] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:168 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [11] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:171 [inlined] [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [16] _start() @ Base ./client.jl:553 ┌ Info: Sequencing data with │ shape: (427, 640) │ metric(s): (Euclidean(1.0e-7), KLDivergence()) └ scale(s): nothing reorder large image, portrait, autoscale: Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:178 Got exception outside of a @test MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::SubArray{Float32, 2, Matrix{Float32}, Tuple{Base.Slice{Base.OneTo{Int64}}, Vector{Int64}}, false}, scales::Int64, metrics::Tuple{Euclidean, KLDivergence}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] autoscale(A::Matrix{Float32}; scales::Vector{Int64}, metrics::Tuple{Euclidean, KLDivergence}, grid::Vector{Float64}, p::Float64) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:171 [7] autoscale @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:158 [inlined] [8] #9 @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:138 [inlined] [9] with_logstate(f::SequencerJ.var"#9#10"{Tuple{Euclidean, KLDivergence}, Matrix{Float32}, Vector{Float64}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:540 [10] with_logger @ ./logging/logging.jl:651 [inlined] [11] sequence(A::Matrix{Float32}; scales::Nothing, metrics::Tuple{Euclidean, KLDivergence}, grid::Nothing) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:137 [12] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [14] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:179 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [16] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:182 [inlined] [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [18] top-level scope @ none:6 [19] eval(m::Module, e::Any) @ Core ./boot.jl:489 [20] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [21] _start() @ Base ./client.jl:553 ┌ Info: Sequencing data with │ shape: (45, 45) │ metric(s): (PeriodicEuclidean(45) [0.15865259961201206,0.15865259961201206],) └ scale(s): (1,) PeriodicEuclidean small image scale=1: Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:189 Got exception outside of a @test MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::Matrix{Float32}, scales::Tuple{Int64}, metrics::Tuple{PeriodicEuclidean{Vector{Float64}}}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] sequence(A::Matrix{Float32}; scales::Tuple{Int64}, metrics::Tuple{PeriodicEuclidean{Vector{Float64}}}, grid::Nothing) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:144 [7] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [9] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:190 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [11] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:196 [inlined] [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [16] _start() @ Base ./client.jl:553 size(imgshuff) = (135, 76) ρ = 0.5 P = [0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5] ┌ Info: Sequencing data with │ shape: (135, 76) │ metric(s): (PeriodicEuclidean(135) [0.5,0.5],) └ scale(s): (1,) PeriodicEuclidean med image scale=1: Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:205 Got exception outside of a @test MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::Matrix{Float32}, scales::Tuple{Int64}, metrics::Tuple{PeriodicEuclidean{Vector{Float64}}}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] sequence(A::Matrix{Float32}; scales::Tuple{Int64}, metrics::Tuple{PeriodicEuclidean{Vector{Float64}}}, grid::Nothing) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:144 [7] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [9] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:206 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [11] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:213 [inlined] [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [16] _start() @ Base ./client.jl:553 size(imgshuff) = (427, 640) ρ = 0.5 ┌ Info: Sequencing data with │ shape: (427, 640) │ metric(s): (PeriodicEuclidean(427) [0.5,0.5],) └ scale(s): (1,) PeriodicEuclidean large image scale=1: Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:222 Got exception outside of a @test MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::Matrix{Float32}, scales::Tuple{Int64}, metrics::Tuple{PeriodicEuclidean{Vector{Float64}}}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] sequence(A::Matrix{Float32}; scales::Tuple{Int64}, metrics::Tuple{PeriodicEuclidean{Vector{Float64}}}, grid::Nothing) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:144 [7] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [9] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:223 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [11] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:229 [inlined] [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [16] _start() @ Base ./client.jl:553 ┌ Info: Sequencing data with │ shape: (45, 45) │ metric(s): (Euclidean(1.0e-7),) └ scale(s): (2,) Accessor functions: Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:238 Got exception outside of a @test MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::Matrix{Float32}, scales::Tuple{Int64}, metrics::Tuple{Euclidean}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] sequence(A::Matrix{Float32}; scales::Tuple{Int64}, metrics::Tuple{Euclidean}, grid::Nothing) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:144 [7] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [9] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:239 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [11] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:239 [inlined] [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [16] _start() @ Base ./client.jl:553 ┌ Info: Sequencing data with │ shape: (45, 45) │ metric(s): (Euclidean(1.0e-7),) └ scale(s): (2,) show: Error During Test at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:247 Got exception outside of a @test MethodError: no method matching kruskal_mst(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}; minimize::Bool) The function `kruskal_mst` exists, but no method is defined for this combination of argument types. Closest candidates are: kruskal_mst(!Matched::AG; ...) where {U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::AG, !Matched::AbstractMatrix{T}; kwargs...) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/SimpleTraits/l1ZsK/src/SimpleTraits.jl:338 kruskal_mst(!Matched::Type{SimpleTraits.Not{IsDirected{AG}}}, !Matched::AG, !Matched::AbstractMatrix{T}; minimize) where {T<:Real, U, AG<:AbstractGraph{U}} @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/spanningtrees/kruskal.jl:12 Stacktrace: [1] _mst(dm::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:367 [2] _measure_dm(D::Matrix{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:285 [3] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:229 [inlined] [4] macro expansion @ ./timing.jl:461 [inlined] [5] _sequence(A::Matrix{Float32}, scales::Tuple{Int64}, metrics::Tuple{Euclidean}, grid::Vector{Float64}) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:210 [6] sequence(A::Matrix{Float32}; scales::Tuple{Int64}, metrics::Tuple{Euclidean}, grid::Nothing) @ SequencerJ ~/.julia/packages/SequencerJ/CnHKe/src/sequencer.jl:144 [7] top-level scope @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:13 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [9] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:248 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1858 [inlined] [11] macro expansion @ ~/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:248 [inlined] [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [16] _start() @ Base ./client.jl:553 Test Summary: | Pass Error Total Time SequencerJ.jl | 18 24 42 2m02.2s Scaling and Distance Matrices | 13 1 14 16.9s Euclidean Distance Matrix | 1 1 4.2s Euclidean simple | 1 1 0.3s Same as scipy.stats.entropy | 1 1 0.1s EMD No Fail | 1 1 7.0s EMD with grid provided, same result as python | 1 1 0.1s EMD grid provided, different constructor, no fail | 1 1 0.2s EMD with grid, different constructor, same result as python | 1 1 0.0s Energy() no fail | 1 1 0.2s energy() not null | 1 1 0.0s Energy() produces same result as python, simple. | 1 1 0.0s Energy() produces same result as python, harder. | 1 1 0.0s energy() w/ different u and v. Compare to python result. | 1 1 0.0s energy() w/ different u and v. Compare to python result. Float32 math. | 1 1 4.8s energy((g1,g2)) w/ different u and v. | 1 1 0.2s autoscale produces one integer result | 1 1 19.1s autoscale produces one integer result | 1 1 0.0s autoscale produces a Fibonacci number | 1 1 0.0s autoscale p=0.2 | 1 1 0.1s autoscale should fail on too few rows | 1 1 0.3s autoscale should fail on too few columns | 1 1 0.0s real image does not fail. | 1 1 15.2s small image does not fail. | 1 1 0.0s small image, multiple scales. | 1 1 0.6s large image does not fail. | 1 1 7.0s reorder small image, scale=1 | 1 1 3.8s reorder small image, autoscale | 1 1 3.0s reorder med image, orig. portrait, scales=(1,2) | 1 1 4.7s reorder med image, orig. portrait, autoscale | 1 1 3.0s reorder med image, landscape, scales=(1,2) | 1 1 0.2s reorder med image, landscape, autoscale | 1 1 0.0s reorder large image, orig. landscape, scales=(1,2,4) | 1 1 4.7s reorder large image, orig. landscape, autoscale | 1 1 0.1s reorder large image, portrait, scales=(1,2,4) | 1 1 0.1s reorder large image, portrait, autoscale | 1 1 3.1s PeriodicEuclidean small image scale=1 | 1 1 5.5s PeriodicEuclidean med image scale=1 | 1 1 0.5s PeriodicEuclidean large image scale=1 | 1 1 1.6s Accessor functions | 1 1 4.1s show | 1 1 0.0s prettyp of a vector | 1 1 0.0s prettyp of a vector, more digits | 1 1 0.0s prettyp of a vector, small | 1 1 0.0s RNG of the outermost testset: Xoshiro(0x4bdca9874967588c, 0xe10b9cd3df66cc32, 0x61185c9e372687b8, 0xc208d0b5b109b010, 0x22b70411d2a0342a) ERROR: LoadError: Some tests did not pass: 18 passed, 0 failed, 24 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/SequencerJ/CnHKe/test/runtests.jl:8 Testing failed after 425.98s ERROR: LoadError: Package SequencerJ errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2661 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2510 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:537 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:309 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [12] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 973.23s: illegal method overwrites during precompilation