Package evaluation of OnlinePCA on Julia 1.13.0-DEV.868 (f2a8e18a98*) started at 2025-07-15T23:40:46.997 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.63s ################################################################################ # Installation # Installing OnlinePCA... Resolving package versions... Installed PlotlyJS ─ v0.18.16 Installed WebIO ──── v0.8.21 Updating `~/.julia/environments/v1.13/Project.toml` [975b03d1] + OnlinePCA v0.3.10 Updating `~/.julia/environments/v1.13/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [c7e460c6] + ArgParse v1.2.0 [bf4720bc] + AssetRegistry v0.1.0 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [35d6a980] + ColorSchemes v3.30.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.17.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [38e38edf] + GLM v1.9.0 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.17 [9fb69e20] + Hiccup v0.2.2 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.4 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [97c1335a] + JSExpr v0.5.4 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [4d4711f2] + MatrixMarket v0.5.2 [739be429] + MbedTLS v1.1.9 [e1d29d7a] + Missings v1.2.0 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [510215fc] + Observables v0.5.5 [975b03d1] + OnlinePCA v0.3.10 [4d8831e6] + OpenSSL v1.5.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.21 [f0f68f2c] + PlotlyJS v0.18.16 [f2990250] + PlotlyKaleido v2.3.0 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [b718987f] + TextWrap v1.0.2 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [f7e6163d] + Kaleido_jll v0.2.1+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [c8ffd9c3] + MbedTLS_jll v2.28.6+2 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [477f73a3] + libaec_jll v1.1.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.14.1+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Building WebIO ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0eef0765186f7452e52236fa42ca8c9b3c11c6e3/build.log` Building PlotlyJS → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b816b0f301b074e002476159a9ada5691eebaf61/build.log` Installation completed after 27.59s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 452.92s ################################################################################ # Testing # Testing OnlinePCA Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_iEaUqr/Project.toml` [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.120 [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.13.0 [975b03d1] + OnlinePCA v0.3.10 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [37e2e46d] ~ LinearAlgebra ⇒ v1.12.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.12.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_iEaUqr/Manifest.toml` [bf4720bc] + AssetRegistry v0.1.0 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.15 [944b1d66] ↑ CodecZlib v0.7.6 ⇒ v0.7.8 [6b39b394] + CodecZstd v0.8.6 [35d6a980] + ColorSchemes v3.30.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] ↑ Compat v4.16.0 ⇒ v4.17.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [a93c6f00] + DataFrames v1.7.0 [864edb3b] ↑ DataStructures v0.18.20 ⇒ v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.120 [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [38e38edf] + GLM v1.9.0 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.17 [9fb69e20] + Hiccup v0.2.2 [34004b35] ↑ HypergeometricFunctions v0.3.24 ⇒ v0.3.28 [842dd82b] + InlineStrings v1.4.4 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] ↑ JLLWrappers v1.5.0 ⇒ v1.7.0 [97c1335a] + JSExpr v0.5.4 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] ↑ LogExpFunctions v0.3.28 ⇒ v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.9 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [510215fc] + Observables v0.5.5 [975b03d1] + OnlinePCA v0.3.10 [4d8831e6] + OpenSSL v1.5.0 [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.1 [90014a1f] ↑ PDMats v0.11.31 ⇒ v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.21 [f0f68f2c] + PlotlyJS v0.18.16 [f2990250] + PlotlyKaleido v2.3.0 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] ↑ PtrArrays v1.2.0 ⇒ v1.3.0 [1fd47b50] ↑ QuadGK v2.10.1 ⇒ v2.11.2 [ae029012] + Requires v1.3.1 [79098fc4] ↑ Rmath v0.7.1 ⇒ v0.8.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [276daf66] ↑ SpecialFunctions v2.4.0 ⇒ v2.5.1 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [82ae8749] ↑ StatsAPI v1.7.0 ⇒ v1.7.1 [2913bbd2] ↑ StatsBase v0.34.3 ⇒ v0.34.5 [4c63d2b9] ↑ StatsFuns v1.3.1 ⇒ v1.5.0 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] ↑ TranscodingStreams v0.11.2 ⇒ v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [f7e6163d] + Kaleido_jll v0.2.1+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [c8ffd9c3] ↑ MbedTLS_jll v2.28.2+1 ⇒ v2.28.6+2 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [f50d1b31] ↑ Rmath_jll v0.4.3+0 ⇒ v0.5.1+0 [477f73a3] + libaec_jll v1.1.3+0 [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.12.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0 [44cfe95a] ↑ Pkg v1.10.0 ⇒ v1.13.0 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] ~ REPL ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.12.0 [f489334b] + StyledStrings v1.11.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.3.0+1 [deac9b47] ↑ LibCURL_jll v8.4.0+0 ⇒ v8.14.1+1 [e37daf67] ↑ LibGit2_jll v1.6.4+0 ⇒ v1.9.1+0 [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1 [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2025.5.20 [4536629a] ↑ OpenBLAS_jll v0.3.23+4 ⇒ v0.3.29+0 [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.10.1+0 [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.13.1+0 [8e850ede] ↑ nghttp2_jll v1.52.0+1 ⇒ v1.65.0+0 [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.5.0+2 Test Successfully re-resolved Status `/tmp/jl_iEaUqr/Project.toml` [c7e460c6] ArgParse v1.2.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.120 [1a297f60] FillArrays v1.13.0 [4d4711f2] MatrixMarket v0.5.2 [975b03d1] OnlinePCA v0.3.10 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.12.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_iEaUqr/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [c7e460c6] ArgParse v1.2.0 [bf4720bc] AssetRegistry v0.1.0 [d1d4a3ce] BitFlags v0.1.9 [ad839575] Blink v0.12.9 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.6 [35d6a980] ColorSchemes v3.30.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [34da2185] Compat v4.17.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [53c48c17] FixedPointNumbers v0.8.5 [de31a74c] FunctionalCollections v0.5.0 [38e38edf] GLM v1.9.0 [f67ccb44] HDF5 v0.17.2 [cd3eb016] HTTP v1.10.17 [9fb69e20] Hiccup v0.2.2 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.4 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [97c1335a] JSExpr v0.5.4 [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [50d2b5c4] Lazy v0.15.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [4d4711f2] MatrixMarket v0.5.2 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [ffc61752] Mustache v1.0.21 [a975b10e] Mux v1.0.2 [510215fc] Observables v0.5.5 [975b03d1] OnlinePCA v0.3.10 [4d8831e6] OpenSSL v1.5.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [a03496cd] PlotlyBase v0.8.21 [f0f68f2c] PlotlyJS v0.18.16 [f2990250] PlotlyKaleido v2.3.0 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [3eaba693] StatsModels v0.7.4 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [b718987f] TextWrap v1.0.2 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.2 [0f1e0344] WebIO v0.8.21 [104b5d7c] WebSockets v1.6.0 [cc8bc4a8] Widgets v0.6.7 [76eceee3] WorkerUtilities v1.6.1 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.1+0 [f7e6163d] Kaleido_jll v0.2.1+0 [7cb0a576] MPICH_jll v4.3.1+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [c8ffd9c3] MbedTLS_jll v2.28.6+2 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.8+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [477f73a3] libaec_jll v1.1.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Testing Running tests... Precompiling packages... 9259.3 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 12 seconds. 49 already precompiled. /tmp/jl_cbC0iF Running all tests... ####### Binarization of CSV (Julia API) ####### 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 ####### Binarization of CSV (Command line) ####### Precompiling packages... 1618.5 ms ✓ WorkerUtilities 906.2 ms ✓ TextWrap 1009.1 ms ✓ DelimitedFiles 910.2 ms ✓ ShiftedArrays 6781.8 ms ✓ Lazy 2083.2 ms ✓ CodecZstd 1425.1 ms ✓ MatrixMarket 1319.8 ms ✓ Mustache 1975.4 ms ✓ Widgets 1018.1 ms ✓ Pidfile 1378.4 ms ✓ FunctionalCollections 1467.9 ms ✓ Hiccup 1209.0 ms ✓ InlineStrings → ParsersExt 1566.4 ms ✓ Kaleido_jll 4723.5 ms ✓ WebSockets 2195.5 ms ✓ ArgParse 13337.6 ms ✓ PlotlyBase 5957.0 ms ✓ StatsModels 1598.5 ms ✓ AssetRegistry 3260.4 ms ✓ WeakRefStrings 1774.7 ms ✓ PlotlyKaleido 10576.8 ms ✓ PlotlyBase → DistributionsExt 16297.9 ms ✓ PlotlyBase → DataFramesExt 7872.4 ms ✓ GLM 8623.6 ms ✓ Mux 9446.7 ms ✓ WebIO 75757.2 ms ✓ CSV 9288.4 ms ✓ JSExpr 15083.1 ms ✓ Blink 26709.8 ms ✓ PlotlyJS 16637.8 ms ✓ PlotlyJS → CSVExt 27535.6 ms ✓ PlotlyJS → DataFramesExt 29473.7 ms ✓ OnlinePCA 33 dependencies successfully precompiled in 314 seconds. 127 already precompiled. 2 dependencies had output during precompilation: ┌ PlotlyBase → DistributionsExt │ WARNING: Constructor for type "Plot" was extended in `DistributionsExt` without explicit qualification or import. │ NOTE: Assumed "Plot" refers to `PlotlyBase.Plot`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Plot end`. │ Hint: To silence the warning, qualify `Plot` as `PlotlyBase.Plot` in the method signature or explicitly `import PlotlyBase: Plot`. └ ┌ WebSockets │ WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. │ WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. └ Parsed args: csvfile => /tmp/jl_cbC0iF/Data.csv binfile => /tmp/jl_cbC0iF/Data.zst 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 ####### Binarization of MM (Julia API) ####### ####### Binarization of MM (Command line) ####### Parsed args: binfile => /tmp/jl_cbC0iF/Data.mtx.zst mmfile => /tmp/jl_cbC0iF/Data.mtx ####### Binarization of Binary COO (Julia API) ####### ####### Binarization of Binary COO (Command line) ####### Parsed args: binfile => /tmp/jl_cbC0iF/Data.bincoo.zst bincoofile => /tmp/jl_cbC0iF/Data.bincoo ####### Summarization (Julia API) ####### 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: outdir => /tmp/jl_xg6FtA binfile => /tmp/jl_cbC0iF/Data.zst pseudocount => 1.0 mode => dense 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Julia API) ####### 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: outdir => /tmp/jl_DJL95G binfile => /tmp/jl_cbC0iF/Data.mtx.zst pseudocount => 1.0 mode => sparse_mm 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### HVG (Julia API) ####### Highly Variable Genes are calculated... ####### HVG (Command line) ####### Parsed args: rowcv2list => /tmp/jl_xg6FtA/Feature_CV2s.csv outdir => /tmp/jl_xg6FtA binfile => /tmp/jl_cbC0iF/Data.zst rowvarlist => /tmp/jl_xg6FtA/Feature_Vars.csv rowmeanlist => /tmp/jl_xg6FtA/Feature_Means.csv Highly Variable Genes are calculated... ####### Filtering (Julia API) ####### ####### Filtering (Command line) ####### Parsed args: input => /tmp/jl_cbC0iF/Data.zst direct1 => + outdir => /tmp/jl_xg6FtA direct2 => + thr2 => 10 samplelist => /tmp/jl_xg6FtA/Sample_NoCounts.csv featurelist => /tmp/jl_xg6FtA/Feature_Means.csv thr1 => 10 Parsed args: input => /tmp/jl_cbC0iF/Data.zst direct1 => + outdir => /tmp/jl_xg6FtA direct2 => + thr2 => 10 samplelist => featurelist => /tmp/jl_xg6FtA/Feature_Means.csv thr1 => 10 Parsed args: input => /tmp/jl_cbC0iF/Data.zst direct1 => + outdir => /tmp/jl_xg6FtA direct2 => + thr2 => 10 samplelist => /tmp/jl_xg6FtA/Sample_NoCounts.csv featurelist => thr1 => 10 ####### GD (Julia API) ####### ####### GD (Command line) ####### Parsed args: scheduling => "robbins-monro" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Parsed args: scheduling => "momentum" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => "/tmp/jl_xg6FtA/Eigen_vectors.csv" lower => 0 offsetStoch => 1.0f-6 Parsed args: scheduling => "nag" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => "/tmp/jl_xg6FtA/Loadings.csv" initW => nothing lower => 0 offsetStoch => 1.0f-6 Parsed args: scheduling => "adagrad" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 ####### Oja (Julia API) ####### Progress: 1%|▎ | ETA: 0:02:36 Progress: 1%|▍ | ETA: 0:03:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:02:39 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:02:41 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:03:22 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### Oja (Command line) ####### Parsed args: scheduling => "robbins-monro" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:06:31 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scheduling => "momentum" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:06:24 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Parsed args: scheduling => "nag" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:08:41 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scheduling => "adagrad" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:07:47 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 ####### SGD (Julia API) ####### Progress: 1%|▎ | ETA: 0:02:47 Progress: 1%|▍ | ETA: 0:03:33 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:04:05 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:04:32 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:04:27 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### SGD (Command line) ####### Parsed args: scheduling => "robbins-monro" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:06:43 Progress: 1%|▍ | ETA: 0:05:31 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scheduling => "momentum" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:07:08 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scheduling => "nag" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:09:16 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 Parsed args: scheduling => "adagrad" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:09:57 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 ####### CCIPCA (Julia API) ####### Progress: 1%|▎ | ETA: 0:01:59 Progress: 1%|▍ | ETA: 0:02:24 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### CCIPCA (Command line) ####### Parsed args: rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" pseudocount => 1.0f0 rowvarlist => "" colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" numepoch => "1" expvar => 0.1f0 perm => false evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-15 Progress: 1%|▎ | ETA: 0:09:02 Progress: 1%|▍ | ETA: 0:07:25 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 ####### RSGD (Julia API) ####### Progress: 1%|▎ | ETA: 0:15:23 Progress: 1%|▍ | ETA: 0:12:03 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 Progress: 1%|▎ | ETA: 0:03:50 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:05:11 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:04:12 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### RSGD (Command line) ####### Parsed args: scheduling => "robbins-monro" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:13:48 Progress: 1%|▍ | ETA: 0:10:13 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scheduling => "momentum" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:14:11 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 Parsed args: scheduling => "nag" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:15:06 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scheduling => "adagrad" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:15:36 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 ####### SVRG (Julia API) ####### Progress: 1%|▎ | ETA: 0:04:38 Progress: 1%|▍ | ETA: 0:05:20 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:06:00 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:08:44 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:07:25 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 ####### SVRG (Command line) ####### Parsed args: scheduling => "robbins-monro" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:15:08 Progress: 1%|▍ | ETA: 0:11:56 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 Parsed args: scheduling => "momentum" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:15:39 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scheduling => "nag" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:18:32 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 Parsed args: scheduling => "adagrad" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:14:07 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 ####### RSVRG (Julia API) ####### Progress: 1%|▎ | ETA: 0:04:31 Progress: 1%|▍ | ETA: 0:05:27 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:05:54 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:08:52 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:07:50 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 ####### RSVRG (Command line) ####### Parsed args: scheduling => "robbins-monro" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:23:10 Progress: 1%|▍ | ETA: 0:16:58 Progress: 100%|█████████████████████████████████████████| Time: 0:00:10 Parsed args: scheduling => "momentum" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:23:06 Progress: 100%|█████████████████████████████████████████| Time: 0:00:09 Parsed args: scheduling => "nag" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:23:55 Progress: 100%|█████████████████████████████████████████| Time: 0:00:09 Parsed args: scheduling => "adagrad" rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" epsilon => 1.0f-8 pseudocount => 1.0f0 rowvarlist => "" offsetFull => 1.0f-20 colsumlist => "" stepsize => "1.0e-15" upper => 1.0f38 cper => 1.0f0 scale => "ftt" g => 0.9f0 numepoch => "1" expvar => 0.1f0 perm => false numbatch => 100 evalfreq => 5000 initV => nothing initW => nothing lower => 0 offsetStoch => 1.0f-6 Progress: 1%|▎ | ETA: 0:24:39 Progress: 100%|█████████████████████████████████████████| Time: 0:00:10 ####### Orthogonal Iteration (Julia API) ####### Progress: 0%|▏ | ETA: 0:06:17 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### Orthogonal Iteration (Command line) ####### Parsed args: rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" pseudocount => 1.0f0 rowvarlist => "" colsumlist => "" upper => 1.0f38 cper => 1.0f0 scale => "ftt" numepoch => "3" expvar => 0.1f0 perm => false initV => nothing initW => nothing lower => 0 Progress: 0%|▏ | ETA: 0:22:08 Progress: 33%|█████████████▊ | ETA: 0:00:09 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 ####### Randomized Block Krylov Iteration (Julia API) ####### Progress: 0%|▏ | ETA: 0:00:48 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 Q' A Q' A' A svd(Q' A' A) Q*U ####### Randomized Block Krylov Iteration (Command line) ####### Parsed args: rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" pseudocount => 1.0f0 rowvarlist => "" colsumlist => "" upper => 1.0f38 cper => 1.0f0 scale => "ftt" numepoch => "3" expvar => 0.1f0 perm => false initV => nothing initW => nothing lower => 0 Progress: 0%|▏ | ETA: 0:21:55 Progress: 33%|█████████████▊ | ETA: 0:00:09 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 Q' A Q' A' A svd(Q' A' A) Q*U ####### ARNOLDI (Julia API) ####### Progress: 20%|████████▎ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 ####### ARNOLDI (Command line) ####### Parsed args: rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" pseudocount => 1.0f0 rowvarlist => "" colsumlist => "" cper => 1.0f0 scale => "ftt" numepoch => "3" expvar => 0.1f0 perm => false Progress: 67%|███████████████████████████▍ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 ####### LANCZOS (Julia API) ####### Progress: 20%|████████▎ | ETA: 0:00:00 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 ####### LANCZOS (Command line) ####### Parsed args: rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" pseudocount => 1.0f0 rowvarlist => "" colsumlist => "" cper => 1.0f0 scale => "ftt" numepoch => "3" expvar => 0.1f0 perm => false Progress: 67%|███████████████████████████▍ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 ####### HALKO (Julia API) ####### Random Projection : Y = A Ω Progress: 1%|▎ | ETA: 0:01:00 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 QR factorization : Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Calculation of small matrix : B = Q' A SVD with small matrix : svd(B) ####### HALKO (Command line) ####### Parsed args: rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" pseudocount => 1.0f0 rowvarlist => "" colsumlist => "" noversamples => 5 cper => 1.0f0 niter => 3 scale => "ftt" perm => false initV => nothing initW => nothing Random Projection : Y = A Ω Progress: 1%|▎ | ETA: 0:06:27 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 QR factorization : Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) Progress: 1%|▎ | ETA: 0:01:48 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Calculation of small matrix : B = Q' A SVD with small matrix : svd(B) ####### ALGORITHM971 (Julia API) ####### Random Projection : Y = A Ω LU factorization : L = lu(Y) Normalized power iterations (1/3) : A' L L = lu(A' L) Normalized power iterations (2/3) : Y = A lu(A' L) Normalized power iterations (3/3) : L = lu(A lu(A' L)) Normalized power iterations (1/3) : A' L L = lu(A' L) Normalized power iterations (2/3) : Y = A lu(A' L) Normalized power iterations (3/3) : L = lu(A lu(A' L)) Normalized power iterations (1/3) : A' L L = lu(A' L) Normalized power iterations (2/3) : Y = A lu(A' L) QR factorization (3/3) : Q = qr(A lu(A' L)) Calculation of small matrix : B = Q' A SVD with small matrix : svd(B) ####### ALGORITHM971 (Command line) ####### Parsed args: rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" pseudocount => 1.0f0 rowvarlist => "" colsumlist => "" noversamples => 5 cper => 1.0f0 niter => 3 scale => "ftt" perm => false initV => nothing initW => nothing Random Projection : Y = A Ω Progress: 1%|▎ | ETA: 0:06:43 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 LU factorization : L = lu(Y) Normalized power iterations (1/3) : A' L Progress: 1%|▎ | ETA: 0:01:55 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 L = lu(A' L) Normalized power iterations (2/3) : Y = A lu(A' L) Normalized power iterations (3/3) : L = lu(A lu(A' L)) Normalized power iterations (1/3) : A' L L = lu(A' L) Normalized power iterations (2/3) : Y = A lu(A' L) Normalized power iterations (3/3) : L = lu(A lu(A' L)) Normalized power iterations (1/3) : A' L L = lu(A' L) Normalized power iterations (2/3) : Y = A lu(A' L) QR factorization (3/3) : Q = qr(A lu(A' L)) Calculation of small matrix : B = Q' A SVD with small matrix : svd(B) ####### SINGLEPASS (Julia API) ####### Random Projection : Y = A Ω, Ytilde = A' Ωtilde QR factorization : Q = qr(Y), Qtilde = qr(Ytilde) Solve linear equation : Ωtilde' Q B = Ytilde' Qtilde for B SVD with small matrix : svd(B) ####### SINGLEPASS (Command line) ####### Parsed args: rowmeanlist => "/tmp/jl_xg6FtA/Feature_FTTMeans.csv" dim => "3" logdir => "/tmp/jl_xg6FtA" input => "/tmp/jl_cbC0iF/Data.zst" outdir => "/tmp/jl_xg6FtA" pseudocount => 1.0f0 rowvarlist => "" colsumlist => "" noversamples => 5 cper => 1.0f0 niter => 3 scale => "ftt" perm => false initV => nothing initW => nothing Random Projection : Y = A Ω, Ytilde = A' Ωtilde Progress: 1%|▎ | ETA: 0:02:28 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 QR factorization : Q = qr(Y), Qtilde = qr(Ytilde) Solve linear equation : Ωtilde' Q B = Ytilde' Qtilde for B SVD with small matrix : svd(B) ####### SINGLEPASS2 (Julia API) ####### Random Projection : G = A Ω, H = A' A Ω Subspace iterations (1/2) : Q = qr(Yi) Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi)) Subspace iterations (1/2) : Q = qr(Yi) Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi)) Subspace iterations (1/2) : Q = qr(Yi) Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi)) SVD with small matrix : svd(B) ####### SINGLEPASS2 (Command line) ####### ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 604 running 1 of 1 signal (10): User defined signal 1 ijl_egal__bitstag at /source/src/builtins.c:285 [inlined] ijl_egal__bitstag at /source/src/builtins.c:245 jl_egal__unboxed_ at /source/src/julia.h:1845 [inlined] jl_egal_ at /source/src/julia.h:1855 [inlined] jl_table_peek_bp at /source/src/iddict.c:128 [inlined] ijl_eqtable_get at /source/src/iddict.c:157 lookup_leafcache at /source/src/gf.c:1490 ml_matches at /source/src/gf.c:4553 ml_matches at /source/src/gf.c:4526 [inlined] ijl_matching_methods at /source/src/gf.c:2913 [inlined] ijl_matching_methods at /source/src/gf.c:2900 _methods_by_ftype at ./runtime_internals.jl:1562 [inlined] verify_call at ./staticdata.jl:328 [inlined] verify_method at ./staticdata.jl:171 verify_method at ./staticdata.jl:239 verify_method at ./staticdata.jl:239 verify_method_graph at ./staticdata.jl:59 _insert_backedges at ./staticdata.jl:33 _insert_backedges at ./staticdata.jl:30 [inlined] insert_backedges at ./staticdata.jl:23 [inlined] #_include_from_serialized#876 at ./loading.jl:1291 _include_from_serialized at ./loading.jl:1247 [inlined] #_require_search_from_serialized#892 at ./loading.jl:2076 _require_search_from_serialized at ./loading.jl:1983 jfptr__require_search_from_serialized_58632.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 __require_prelocked at ./loading.jl:2602 _require_prelocked at ./loading.jl:2468 macro expansion at ./loading.jl:2396 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2360 jfptr___require_71074.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 jl_apply at /source/src/julia.h:2345 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:896 require at ./loading.jl:2336 [inlined] eval_import_path at ./module.jl:36 [inlined] eval_import_path_all at ./module.jl:60 _eval_using at ./module.jl:137 jfptr__eval_using_56857.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 jl_apply at /source/src/julia.h:2345 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2848 _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 _include at ./loading.jl:2908 include at ./Base.jl:309 exec_options at ./client.jl:320 _start at ./client.jl:553 jfptr__start_60077.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 jl_apply at /source/src/julia.h:2345 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x76b9d58d0249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 201 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_57010.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 jl_apply at /source/src/julia.h:2345 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_57010.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 jl_apply at /source/src/julia.h:2345 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000075f5a089d4b0 Total snapshots: 152. Utilization: 0% ╎152 @Base/task.jl:1129 wait_forever() 151╎ 152 @Base/task.jl:1192 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_57010.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 jl_apply at /source/src/julia.h:2345 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 28706356 (Pool: 28705771; Big: 585); GC: 25 [604] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/bin/singlepass2:93 obviously_disjoint at /source/src/subtype.c:543 [inlined] jl_type_intersection_env_s at /source/src/subtype.c:4570 typeintersect at ./runtime_internals.jl:1094 [inlined] hasintersect at ./runtime_internals.jl:1756 [inlined] walk_to_defs at ./../usr/share/julia/Compiler/src/ssair/passes.jl:308 collect_leaves at ./../usr/share/julia/Compiler/src/ssair/passes.jl:192 [inlined] lift_comparison_leaves! at ./../usr/share/julia/Compiler/src/ssair/passes.jl:610 lift_comparison! at ./../usr/share/julia/Compiler/src/ssair/passes.jl:582 [inlined] sroa_pass! at ./../usr/share/julia/Compiler/src/ssair/passes.jl:1364 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1035 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1048 [inlined] optimize at ./../usr/share/julia/Compiler/src/optimize.jl:1021 jfptr_optimize_81137.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 finish_nocycle at ./../usr/share/julia/Compiler/src/typeinfer.jl:232 jfptr_finish_nocycle_83135.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4476 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1378 [201] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/test/test_singlepass2.jl:17 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1561 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1570 jfptr_typeinf_ext_toplevel_85091.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 jl_apply at /source/src/julia.h:2345 [inlined] jl_type_infer at /source/src/gf.c:462 jl_compile_method_internal at /source/src/gf.c:3292 _jl_invoke at /source/src/gf.c:3785 [inlined] ijl_apply_generic at /source/src/gf.c:3993 jl_apply at /source/src/julia.h:2345 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:896 #invokelatest_gr#236 at ./reflection.jl:0 [inlined] invokelatest_gr at ./reflection.jl:1325 [inlined] #handle_message_nothrow#2 at ./logging/logging.jl:432 handle_message_nothrow at ./logging/logging.jl:429 macro expansion at ./logging/logging.jl:417 [inlined] #warning_empty#40 at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 [inlined] warning_empty at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1360 [inlined] #print#5 at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:358 print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 [inlined] print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 [inlined] print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 _peek_report at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:94 unknown function (ip: 0x76b9d452e22f) at (unknown file) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 jl_apply at /source/src/julia.h:2345 [inlined] jl_f_invokelatest at /source/src/builtins.c:877 profile_printing_listener at ./Base.jl:337 #start_profile_listener##0 at ./Base.jl:355 jfptr_YY.start_profile_listenerYY.YY.0_6417.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 jl_apply at /source/src/julia.h:2345 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 20227638 (Pool: 20227344; Big: 294); GC: 17 _ZN12_GLOBAL__N_130DeadMachineInstructionElimImpl15eliminateDeadMIERN4llvm15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_130DeadMachineInstructionElimImpl7runImplERN4llvm15MachineFunctionE.constprop.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_126DeadMachineInstructionElim20runOnMachineFunctionERN4llvm15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1620 addModule at /source/src/jitlayers.cpp:2101 jl_compile_codeinst_now at /source/src/jitlayers.cpp:683 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:883 jl_compile_method_internal at /source/src/gf.c:3305 _jl_invoke at /source/src/gf.c:3785 [inlined] ijl_apply_generic at /source/src/gf.c:3993 jl_apply at /source/src/julia.h:2345 [inlined] jl_f_invokelatest at /source/src/builtins.c:877 profile_printing_listener at ./Base.jl:337 #start_profile_listener##0 at ./Base.jl:355 jfptr_YY.start_profile_listenerYY.YY.0_6417.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 jl_apply at /source/src/julia.h:2345 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 92933455 (Pool: 92932171; Big: 1284); GC: 64 PkgEval terminated after 2734.02s: test duration exceeded the time limit