Package evaluation of PALEOaqchem on Julia 1.13.0-DEV.860 (6ddb3d6410*) started at 2025-07-13T22:54:33.491


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.57s


################################################################################
# Installation
#

Installing PALEOaqchem...
   Resolving package versions...
    Updating `~/.julia/environments/v1.13/Project.toml`
  [673cec3b] + PALEOaqchem v0.3.19
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [79e6a3ab] + Adapt v4.3.0
  [ec485272] + ArnoldiMethod v0.4.0
  [a9b6321e] + Atomix v1.1.1
  [13072b0f] + AxisAlgorithms v1.1.0
  [6e4b80f9] + BenchmarkTools v1.6.0
  [e1450e63] + BufferedStreams v1.2.2
⌅ [179af706] + CFTime v0.1.4
  [d360d2e6] + ChainRulesCore v1.25.2
  [da1fd8a2] + CodeTracking v1.3.9
  [944b1d66] + CodecZlib v0.7.8
  [1fbeeb36] + CommonDataModel v0.3.8
  [34da2185] + Compat v4.17.0
  [807dbc54] + Compiler v0.1.1
  [187b0558] + ConstructionBase v1.6.0
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [3c3547ce] + DiskArrays v0.4.14
  [ffbed154] + DocStringExtensions v0.9.5
  [e2ba6199] + ExprTools v0.1.10
  [86223c79] + Graphs v1.13.0
  [f67ccb44] + HDF5 v0.17.2
  [5903a43b] + Infiltrator v1.9.2
  [d25df0c9] + Inflate v0.1.5
  [842dd82b] + InlineStrings v1.4.4
⌅ [a98d9a8b] + Interpolations v0.15.1
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [682c06a0] + JSON v0.21.4
  [aa1ae85d] + JuliaInterpreter v0.10.3
  [8ac3fa9e] + LRUCache v1.6.2
  [b964fa9f] + LaTeXStrings v1.4.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [6f1432cf] + LoweredCodeUtils v3.4.1
  [23992714] + MAT v0.10.7
  [3da0fdf6] + MPIPreferences v0.1.11
  [1914dd2f] + MacroTools v0.5.16
  [e1d29d7a] + Missings v1.2.0
  [85f8d34a] + NCDatasets v0.14.8
  [6fe1bfb0] + OffsetArrays v1.17.0
  [bac558e1] + OrderedCollections v1.8.1
  [673cec3b] + PALEOaqchem v0.3.19
⌃ [804b410e] + PALEOboxes v0.22.3
  [69de0a69] + Parsers v2.8.3
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
  [c84ed2f1] + Ratios v0.4.5
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [295af30f] + Revise v3.8.0
  [fdea26ae] + SIMD v3.7.1
  [91c51154] + SentinelArrays v1.4.8
  [699a6c99] + SimpleTraits v0.9.4
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.1
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [69024149] + StringEncodings v0.3.7
  [892a3eda] + StringManipulation v0.4.1
  [09ab397b] + StructArrays v0.7.1
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [1e6cf692] + TestEnv v1.102.1
  [a759f4b9] + TimerOutputs v0.5.29
  [3bb67fe8] + TranscodingStreams v0.11.3
  [013be700] + UnsafeAtomics v0.3.0
  [efce3f68] + WoodburyMatrices v1.0.0
  [ddb6d928] + YAML v0.4.14
  [0b7ba130] + Blosc_jll v1.21.7+0
  [6e34b625] + Bzip2_jll v1.0.9+0
  [0234f1f7] + HDF5_jll v1.14.6+0
  [e33a78d0] + Hwloc_jll v2.12.1+0
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [5ced341a] + Lz4_jll v1.10.1+0
  [7cb0a576] + MPICH_jll v4.3.1+0
  [f1f71cc9] + MPItrampoline_jll v5.5.4+0
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [7243133f] + NetCDF_jll v401.900.300+0
  [fe0851c0] + OpenMPI_jll v5.0.8+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [63e82ce6] + SLEEF_jll v3.7.0+0
⌅ [02c8fc9c] + XML2_jll v2.13.6+1
  [ffd25f8a] + XZ_jll v5.8.1+0
  [477f73a3] + libaec_jll v1.1.3+0
  [337d8026] + libzip_jll v1.11.3+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
  [de0858da] + Printf v1.11.0
  [9abbd945] + Profile v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [781609d7] + GMP_jll v6.3.0+2
  [deac9b47] + LibCURL_jll v8.14.1+1
  [e37daf67] + LibGit2_jll v1.9.1+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [3a97d323] + MPFR_jll v4.2.2+0
  [14a3606d] + MozillaCACerts_jll v2025.5.20
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.5+0
  [458c3c95] + OpenSSL_jll v3.5.1+0
  [efcefdf7] + PCRE2_jll v10.45.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.13.1+0
  [8e850ede] + nghttp2_jll v1.65.0+0
  [3f19e933] + p7zip_jll v17.5.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 10.98s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 47 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
wait at ./task.jl:1192
wait_forever at ./task.jl:1129
jfptr_wait_forever_38706.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3793 [inlined]
ijl_apply_generic at /source/src/gf.c:3993
jl_apply at /source/src/julia.h:2345 [inlined]
start_task at /source/src/task.c:1249
unknown function (ip: (nil)) at (unknown file)

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362
Overhead ╎ [+additional indent] Count File:Line  Function
=========================================================
Thread 1 (default) Task 0x0000759bbebe7490 Total snapshots: 425. Utilization: 0%
   ╎425 @Base/task.jl:1129  wait_forever()
424╎ 425 @Base/task.jl:1192  wait()


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 1 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
wait at ./task.jl:1192
wait_forever at ./task.jl:1129
jfptr_wait_forever_38706.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3793 [inlined]
ijl_apply_generic at /source/src/gf.c:3993
jl_apply at /source/src/julia.h:2345 [inlined]
start_task at /source/src/task.c:1249
unknown function (ip: (nil)) at (unknown file)

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362
Overhead ╎ [+additional indent] Count File:Line  Function
=========================================================
Thread 1 (default) Task 0x000079508c964d30 Total snapshots: 423. Utilization: 0%
   ╎423 @Base/task.jl:1129  wait_forever()
422╎ 423 @Base/task.jl:1192  wait()


[47] signal 15: Terminated
in expression starting at /PkgEval.jl/scripts/precompile.jl:37
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
wait at ./task.jl:1192
wait_forever at ./task.jl:1129
jfptr_wait_forever_38706.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3793 [inlined]
ijl_apply_generic at /source/src/gf.c:3993
jl_apply at /source/src/julia.h:2345 [inlined]
start_task at /source/src/task.c:1249
unknown function (ip: (nil)) at (unknown file)
Allocations: 58074816 (Pool: 58074006; Big: 810); GC: 77

PkgEval terminated after 2734.15s: test duration exceeded the time limit