Package evaluation of Stheno on Julia 1.13.0-DEV.834 (c3282ceaac*) started at 2025-07-08T17:20:35.881 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.59s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.1 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.25.2 [34da2185] + Compat v4.17.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.18s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 69.84s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_i9NNmZ/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.32 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_i9NNmZ/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.1 [a9b6321e] Atomix v1.1.1 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.25.2 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.17.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.3 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.36 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.2 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.3.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.37+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 7686.6 ms ✓ Documenter 1 dependency successfully precompiled in 8 seconds. 29 already precompiled. Precompiling packages... 2135.4 ms ✓ StructArrays 9666.0 ms ✓ ForwardDiff 1545.6 ms ✓ StructArrays → StructArraysLinearAlgebraExt 2001.0 ms ✓ StructArrays → StructArraysStaticArraysExt 1879.4 ms ✓ StructArrays → StructArraysSparseArraysExt 2945.6 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 938.3 ms ✓ StructArrays → StructArraysAdaptExt 3991.9 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 9878.2 ms ✓ ChainRules 64794.5 ms ✓ Zygote 10 dependencies successfully precompiled in 101 seconds. 95 already precompiled. Precompiling packages... 9861.9 ms ✓ Zygote → ZygoteDistancesExt 1 dependency successfully precompiled in 11 seconds. 109 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#280` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 19m26.6s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1184s / 98.5% 30.0GiB / 99.3% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 740s 63.4% 740s 20.8GiB 69.7% 20.8GiB addition 1 409s 35.1% 409s 12.0GiB 40.1% 12.0GiB Standardised Tests (correlated sum) 1 224s 19.2% 224s 6.48GiB 21.7% 6.48GiB adj_ad 9 24.9s 2.1% 2.76s 1.05GiB 3.5% 119MiB adj_fd 9 9.12s 0.8% 1.01s 331MiB 1.1% 36.8MiB Standardised Tests (independent sum) 1 137s 11.7% 137s 5.15GiB 17.3% 5.15GiB adj_ad 9 26.4s 2.3% 2.94s 1.27GiB 4.3% 145MiB adj_fd 9 10.8s 0.9% 1.20s 316MiB 1.0% 35.2MiB Correlated GPs 1 44.9s 3.9% 44.9s 297MiB 1.0% 297MiB Consistency Tests 1 19.0s 1.6% 19.0s 130MiB 0.4% 130MiB Verify mean / kernel numerically 1 2.99s 0.3% 2.99s 43.5MiB 0.1% 43.5MiB Consistency Tests 1 1.79s 0.2% 1.79s 15.0MiB 0.0% 15.0MiB product 1 154s 13.2% 154s 4.08GiB 13.7% 4.08GiB multiply by function 1 92.6s 7.9% 92.6s 2.18GiB 7.3% 2.18GiB Diff Tests 1 51.4s 4.4% 51.4s 1.63GiB 5.5% 1.63GiB adj_ad 9 19.7s 1.7% 2.19s 898MiB 2.9% 100MiB adj_fd 9 5.94s 0.5% 660ms 116MiB 0.4% 12.9MiB Consistency Tests 1 6.56s 0.6% 6.56s 110MiB 0.4% 110MiB multiply by constant 1 60.9s 5.2% 60.9s 1.90GiB 6.4% 1.90GiB Diff Tests 1 44.7s 3.8% 44.7s 1.85GiB 6.2% 1.85GiB adj_ad 9 15.9s 1.4% 1.76s 821MiB 2.7% 91.2MiB adj_fd 9 10.1s 0.9% 1.12s 310MiB 1.0% 34.4MiB Consistency Tests 1 4.00s 0.3% 4.00s 20.6MiB 0.1% 20.6MiB GP mul errors 1 11.6ms 0.0% 11.6ms 40.5KiB 0.0% 40.5KiB compose 1 84.9s 7.3% 84.9s 2.42GiB 8.1% 2.42GiB general 1 51.4s 4.4% 51.4s 1.54GiB 5.2% 1.54GiB Diff Tests 1 44.9s 3.8% 44.9s 1.49GiB 5.0% 1.49GiB adj_ad 9 13.9s 1.2% 1.54s 726MiB 2.4% 80.7MiB adj_fd 9 5.61s 0.5% 624ms 114MiB 0.4% 12.7MiB Consistency Tests 1 5.07s 0.4% 5.07s 40.3MiB 0.1% 40.3MiB Stretch 1 27.4s 2.3% 27.4s 792MiB 2.6% 792MiB scalar stretch 1 26.6s 2.3% 26.6s 779MiB 2.6% 779MiB scalar input 1 25.8s 2.2% 25.8s 775MiB 2.5% 775MiB adj_fd 9 9.31s 0.8% 1.03s 298MiB 1.0% 33.1MiB adj_ad 9 3.34s 0.3% 372ms 145MiB 0.5% 16.1MiB vector input 1 837ms 0.1% 837ms 3.38MiB 0.0% 3.38MiB Vector stretch 1 632ms 0.1% 632ms 10.0MiB 0.0% 10.0MiB Matrix stretch 1 135ms 0.0% 135ms 3.08MiB 0.0% 3.08MiB Shift 1 3.17s 0.3% 3.17s 41.7MiB 0.1% 41.7MiB Shift{Vector{Float64}} 1 1.73s 0.1% 1.73s 15.0MiB 0.0% 15.0MiB Shift{Float64} 1 1.44s 0.1% 1.44s 26.7MiB 0.1% 26.7MiB Select 1 1.70s 0.1% 1.70s 33.6MiB 0.1% 33.6MiB evaluation 1 827ms 0.1% 827ms 21.4MiB 0.1% 21.4MiB idx isa Vector 1 509ms 0.0% 509ms 8.11MiB 0.0% 8.11MiB idx isa Integer 1 361ms 0.0% 361ms 4.13MiB 0.0% 4.13MiB Periodic 1 1.18s 0.1% 1.18s 34.7MiB 0.1% 34.7MiB cross 1 30.4s 2.6% 30.4s 1.43GiB 4.8% 1.43GiB block arrays 1 16.4s 1.4% 16.4s 807MiB 2.6% 807MiB Stheno._collect ∘ _mortar 1 13.8s 1.2% 13.8s 690MiB 2.3% 690MiB BlockMatrix 1 7.29s 0.6% 7.29s 381MiB 1.2% 381MiB adj_fd 1 965ms 0.1% 965ms 112MiB 0.4% 112MiB adj_ad 1 53.8ms 0.0% 53.8ms 2.41MiB 0.0% 2.41MiB BlockVector 1 6.53s 0.6% 6.53s 309MiB 1.0% 309MiB adj_fd 1 786ms 0.1% 786ms 13.3MiB 0.0% 13.3MiB adj_ad 1 204ms 0.0% 204ms 16.2MiB 0.1% 16.2MiB fdm stuff 1 2.57s 0.2% 2.57s 116MiB 0.4% 116MiB Correctness tests 1 7.86s 0.7% 7.86s 411MiB 1.3% 411MiB Standardised Tests 1 6.15s 0.5% 6.15s 245MiB 0.8% 245MiB gp 1 199s 17.1% 199s 4.61GiB 15.5% 4.61GiB sparse gp 1 22.1s 1.9% 22.1s 400MiB 1.3% 400MiB SparseFiniteGP inference 1 16.6s 1.4% 16.6s 281MiB 0.9% 281MiB SparseFiniteGP methods 1 5.08s 0.4% 5.08s 114MiB 0.4% 114MiB SparseFiniteGP Constructors 1 395ms 0.0% 395ms 4.13MiB 0.0% 4.13MiB adj_ad 2 21.9s 1.9% 10.9s 863MiB 2.8% 432MiB gp 1 16.4s 1.4% 16.4s 272MiB 0.9% 272MiB GP 1 16.1s 1.4% 16.1s 269MiB 0.9% 269MiB independent GPs 1 314ms 0.0% 314ms 2.73MiB 0.0% 2.73MiB wrapped AbstractGP 1 13.2ms 0.0% 13.2ms 292KiB 0.0% 292KiB adj_fd 2 2.55s 0.2% 1.28s 43.6MiB 0.1% 21.8MiB derived_gp 1 167μs 0.0% 167μs 1.59KiB 0.0% 1.59KiB gaussian_process_probabilistic_programme 1 146s 12.5% 146s 2.37GiB 7.9% 2.37GiB Zygote 1 27.6s 2.4% 27.6s 1.00GiB 3.4% 1.00GiB nested gppp 1 16.8s 1.4% 16.8s 93.2MiB 0.3% 93.2MiB External Consistency 1 13.9s 1.2% 13.9s 100MiB 0.3% 100MiB split 1 654ms 0.1% 654ms 12.3MiB 0.0% 12.3MiB gppp macro 1 56.1ms 0.0% 56.1ms 579KiB 0.0% 579KiB doctests 1 73.9s 6.3% 73.9s 1.79GiB 6.0% 1.79GiB BlockData 1 7.76s 0.7% 7.76s 274MiB 0.9% 274MiB vcat(::GPPPInput...) 1 2.51s 0.2% 2.51s 106MiB 0.3% 106MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1319.73s PkgEval succeeded after 1420.88s