Package evaluation of Catlab on Julia 1.13.0-DEV.834 (c3282ceaac*) started at 2025-07-08T17:48:13.054 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.36s ################################################################################ # Installation # Installing Catlab... Resolving package versions... ┌ Warning: tarball content does not match git-tree-sha1 └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:766 Cloning [227ef7b5-1206-438b-ac65-934d6da304b8] ACSets from https://github.com/AlgebraicJulia/ACSets.jl.git Installed ACSets ─ v0.2.24 Updating `~/.julia/environments/v1.13/Project.toml` [134e5e36] + Catlab v0.16.20 Updating `~/.julia/environments/v1.13/Manifest.toml` [227ef7b5] + ACSets v0.2.24 [23cfdc9f] + AlgebraicInterfaces v0.1.4 [134e5e36] + Catlab v0.16.20 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌅ [5ae59095] + Colors v0.12.11 [861a8166] + Combinatorics v1.0.3 [0fb5dd42] + CompTime v0.1.2 [34da2185] + Compat v4.17.0 [a81c6b42] + Compose v0.9.6 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [f0ffcf3b] + GATlab v0.1.5 [6b9d7cbe] + GeneralizedGenerated v0.3.3 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [b14d175d] + JuliaVariables v0.2.4 [b964fa9f] + LaTeXStrings v1.4.0 [9c8b4983] + LightXML v0.9.2 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [442fdcdd] + Measures v0.3.2 [71a1bf82] + NameResolution v0.1.5 [bac558e1] + OrderedCollections v1.8.1 [12d937ae] + PEG v1.0.4 [69de0a69] + Parsers v2.8.3 [2ae35dd2] + Permutations v0.4.23 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [8162dcfd] + PrettyPrint v0.2.0 [08abe8d2] + PrettyTables v2.4.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.1 [6ec83bb0] + StructEquality v2.1.0 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [94ce4f54] + Libiconv_jll v1.18.0+0 [02c8fc9c] + XML2_jll v2.14.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.14.1+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.81s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 2 direct dependencies failed to precompile: MetaGraphs Failed to precompile MetaGraphs [626554b9-1ddb-594c-aa3c-2596fe9399a5] to "/home/pkgeval/.julia/compiled/v1.13/MetaGraphs/jl_GDcG0U" (ProcessExited(1)). Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_obm8BA"). Fatal error: ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading JLD2 using JLD2") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2184 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2192 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2462 [4] _require_prelocked @ ./loading.jl:2461 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2459 [7] require @ ./loading.jl:2457 [inlined] [8] #37 @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [inlined] [9] lock(f::FileIO.var"#37#38"{Base.PkgId}, l::ReentrantLock) @ Base ./lock.jl:335 [10] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [11] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [12] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [13] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [14] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [15] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [16] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [17] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [18] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [19] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [20] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [21] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [22] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 Stacktrace: [1] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71 [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66 [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228 [4] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [5] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [6] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [7] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [8] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [9] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [10] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [11] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [12] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [13] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [14] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [15] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] IncludeInto @ ./Base.jl:311 [inlined] [18] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518 [19] include(mod::Module, _path::String) @ Base ./Base.jl:309 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3001 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [24] include_string @ ./loading.jl:2857 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [26] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.13/JLD2/jl_PVO1cY" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3288 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2653 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#236 @ ./reflection.jl:1332 [inlined] [8] invokelatest_gr @ ./reflection.jl:1324 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3859 [10] maybe_cachefile_lock @ ./loading.jl:3856 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2639 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2467 [13] macro expansion @ ./loading.jl:2395 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [16] require @ ./loading.jl:2336 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/MetaGraphs/qq8oz/src/MetaGraphs.jl:3 [21] include(mod::Module, _path::String) @ Base ./Base.jl:309 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3001 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [26] include_string @ ./loading.jl:2857 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [28] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/MetaGraphs/qq8oz/src/MetaGraphs.jl:1 in expression starting at stdin:5 CatlabMetaGraphsExt Failed to precompile CatlabMetaGraphsExt [290f8f77-2072-5e21-992d-8502a00cff2b] to "/home/pkgeval/.julia/compiled/v1.13/CatlabMetaGraphsExt/jl_YoxEW1" (ProcessExited(1)). Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_UDxmS3"). Fatal error: ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading JLD2 using JLD2") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2184 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2192 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2462 [4] _require_prelocked @ ./loading.jl:2461 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2459 [7] require @ ./loading.jl:2457 [inlined] [8] #37 @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [inlined] [9] lock(f::FileIO.var"#37#38"{Base.PkgId}, l::ReentrantLock) @ Base ./lock.jl:335 [10] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [11] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [12] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [13] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [14] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [15] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [16] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [17] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [18] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [19] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [20] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [21] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [22] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 Stacktrace: [1] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71 [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66 [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228 [4] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [5] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [6] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [7] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [8] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [9] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [10] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [11] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [12] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [13] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [14] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [15] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] IncludeInto @ ./Base.jl:311 [inlined] [18] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518 [19] include(mod::Module, _path::String) @ Base ./Base.jl:309 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3001 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [24] include_string @ ./loading.jl:2857 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [26] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.13/JLD2/jl_cn8qV5" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3288 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2653 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#236 @ ./reflection.jl:1332 [inlined] [8] invokelatest_gr @ ./reflection.jl:1324 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3859 [10] maybe_cachefile_lock @ ./loading.jl:3856 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2639 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2467 [13] macro expansion @ ./loading.jl:2395 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [16] require @ ./loading.jl:2336 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/MetaGraphs/qq8oz/src/MetaGraphs.jl:3 [21] include(mod::Module, _path::String) @ Base ./Base.jl:309 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3001 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [26] include_string @ ./loading.jl:2857 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [28] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/MetaGraphs/qq8oz/src/MetaGraphs.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile MetaGraphs [626554b9-1ddb-594c-aa3c-2596fe9399a5] to "/home/pkgeval/.julia/compiled/v1.13/MetaGraphs/jl_BsRlSN" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3288 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2653 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#236 @ ./reflection.jl:1332 [inlined] [8] invokelatest_gr @ ./reflection.jl:1324 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3859 [10] maybe_cachefile_lock @ ./loading.jl:3856 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2639 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2467 [13] macro expansion @ ./loading.jl:2395 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [16] require @ ./loading.jl:2336 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) @ Base ./module.jl:111 [19] top-level scope @ ~/.julia/packages/Catlab/1srGD/ext/CatlabMetaGraphsExt.jl:5 [20] include(mod::Module, _path::String) @ Base ./Base.jl:309 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3001 [22] top-level scope @ stdin:5 [23] eval(m::Module, e::Any) @ Core ./boot.jl:489 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [25] include_string @ ./loading.jl:2857 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [27] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Catlab/1srGD/ext/CatlabMetaGraphsExt.jl:1 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 580.97s ################################################################################ # Testing # Testing Catlab Status `/tmp/jl_0sRuu8/Project.toml` [227ef7b5] ACSets v0.2.24 [23cfdc9f] AlgebraicInterfaces v0.1.4 [134e5e36] Catlab v0.16.20 [a81c6b42] Compose v0.9.6 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 ⌅ [f0ffcf3b] GATlab v0.1.5 [86223c79] Graphs v1.13.0 [42fd0dbc] IterativeSolvers v0.9.4 [0f8b85d8] JSON3 v1.14.3 [9c8b4983] LightXML v0.9.2 ⌃ [626554b9] MetaGraphs v0.7.2 [12d937ae] PEG v1.0.4 [90137ffa] StaticArrays v1.9.13 [bd369af6] Tables v1.12.1 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_0sRuu8/Manifest.toml` [227ef7b5] ACSets v0.2.24 [23cfdc9f] AlgebraicInterfaces v0.1.4 [ec485272] ArnoldiMethod v0.4.0 [134e5e36] Catlab v0.16.20 ⌅ [3da002f7] ColorTypes v0.11.5 ⌅ [5ae59095] Colors v0.12.11 [861a8166] Combinatorics v1.0.3 [0fb5dd42] CompTime v0.1.2 [34da2185] Compat v4.17.0 [a81c6b42] Compose v0.9.6 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [5789e2e9] FileIO v1.17.0 [53c48c17] FixedPointNumbers v0.8.5 ⌅ [f0ffcf3b] GATlab v0.1.5 [6b9d7cbe] GeneralizedGenerated v0.3.3 [86223c79] Graphs v1.13.0 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.4 [41ab1584] InvertedIndices v1.3.1 [c8e1da08] IterTools v1.10.0 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.4.54 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [b14d175d] JuliaVariables v0.2.4 [b964fa9f] LaTeXStrings v1.4.0 [9c8b4983] LightXML v0.9.2 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.16 [442fdcdd] Measures v0.3.2 ⌃ [626554b9] MetaGraphs v0.7.2 [e1d29d7a] Missings v1.2.0 [71a1bf82] NameResolution v0.1.5 [bac558e1] OrderedCollections v1.8.1 [12d937ae] PEG v1.0.4 [69de0a69] Parsers v2.8.3 [2ae35dd2] Permutations v0.4.23 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [8162dcfd] PrettyPrint v0.2.0 [08abe8d2] PrettyTables v2.4.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [91c51154] SentinelArrays v1.4.8 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [892a3eda] StringManipulation v0.4.1 [6ec83bb0] StructEquality v2.1.0 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [94ce4f54] Libiconv_jll v1.18.0+0 [02c8fc9c] XML2_jll v2.14.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Theories | 275 275 1m37.8s Categories: Error During Test at /home/pkgeval/.julia/packages/Catlab/1srGD/test/categorical_algebra/FinCats.jl:40 Test threw exception Expression: edges(g) == [1, 3] MethodError: no method matching edges(::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{1, Int64}}}) The function `edges` exists, but no method is defined for this combination of argument types. Closest candidates are: edges(!Matched::Catlab.Graphs.BasicGraphs.HasGraph) @ Catlab ~/.julia/packages/Catlab/1srGD/src/graphs/BasicGraphs.jl:106 edges(!Matched::Catlab.Graphs.BasicGraphs.HasGraph, !Matched::Int64, !Matched::Int64) @ Catlab ~/.julia/packages/Catlab/1srGD/src/graphs/BasicGraphs.jl:107 edges(!Matched::Catlab.Graphs.BipartiteGraphs.AbstractUndirectedBipartiteGraph) @ Catlab ~/.julia/packages/Catlab/1srGD/src/graphs/BipartiteGraphs.jl:135 ... Stacktrace: [1] top-level scope @ ~/.julia/packages/Catlab/1srGD/test/categorical_algebra/FinCats.jl:529 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 [inlined] Categories: Error During Test at /home/pkgeval/.julia/packages/Catlab/1srGD/test/categorical_algebra/FinCats.jl:76 Test threw exception Expression: hom_map(G, Path(h, [1, 2])) == Path(k, [1, 2, 3, 4]) MethodError: no method matching has_part(::Catlab.Graphs.BasicGraphs.Graph, ::Symbol, ::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{0, Int64}}) The function `has_part` exists, but no method is defined for this combination of argument types. Closest candidates are: has_part(::Any, ::Symbol, !Matched::Int64) @ ACSets ~/.julia/packages/ACSets/arYE8/src/ACSetInterface.jl:102 has_part(::Any, ::Symbol, !Matched::AbstractVector{Int64}) @ ACSets ~/.julia/packages/ACSets/arYE8/src/ACSetInterface.jl:103 has_part(::ACSets.DenseACSets.StructACSet{S}, ::Symbol) where S @ ACSets ~/.julia/packages/ACSets/arYE8/src/DenseACSets.jl:467 ... Stacktrace: [1] has_edge(g::Catlab.Graphs.BasicGraphs.Graph, e::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{0, Int64}}) @ Catlab.Graphs.BasicGraphs ~/.julia/packages/Catlab/1srGD/src/graphs/BasicGraphs.jl:124 [2] (::Catlab.CategoricalAlgebra.FinCats.var"#Path##0#Path##1"{Catlab.Graphs.BasicGraphs.Graph})(e::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{0, Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:187 [3] _all @ ./anyall.jl:211 [inlined] [4] all @ ./reducedim.jl:996 [inlined] [5] Catlab.CategoricalAlgebra.FinCats.Path(g::Catlab.Graphs.BasicGraphs.Graph, es::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:187 [6] coerce_path(g::Catlab.Graphs.BasicGraphs.Graph, x::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:233 [7] (::Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}})(f::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ./none:-1 [8] MappingRF @ ./reduce.jl:98 [inlined] [9] afoldl(::Base.MappingRF{Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}, Base.BottomRF{typeof(vcat)}}, ::Base._InitialValue, ::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, ::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}) @ Base ./operators.jl:600 [10] _foldl_impl(op::Base.MappingRF{Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}, Base.BottomRF{typeof(vcat)}}, init::Base._InitialValue, itr::Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}) @ Base ./reduce.jl:66 [11] foldl_impl(op::Base.MappingRF{Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}, Base.BottomRF{typeof(vcat)}}, nt::Base._InitialValue, itr::Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}) @ Base ./reduce.jl:46 [12] mapfoldl_impl(f::typeof(identity), op::typeof(vcat), nt::Base._InitialValue, itr::Base.Generator{Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}, Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}}) @ Base ./reduce.jl:42 [13] mapfoldl(f::Function, op::Function, itr::Base.Generator{Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}, Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}}; init::Base._InitialValue) @ Base ./reduce.jl:173 [14] mapreduce(f::Function, op::Function, itr::Base.Generator{Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}, Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}}; kw::@Kwargs{}) @ Base ./reduce.jl:305 [15] reduce(op::Function, itr::Base.Generator{Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}, Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}}; kw::@Kwargs{}) @ Base ./reduce.jl:489 [16] compose(::Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, ::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, ::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:227 [17] (::Catlab.CategoricalAlgebra.FinCats.var"#hom_map##2#hom_map##3"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}})(::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, ::Vararg{Any}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:394 [18] BottomRF @ ./reduce.jl:84 [inlined] [19] MappingRF @ ./reduce.jl:98 [inlined] [20] _foldl_impl @ ./reduce.jl:60 [inlined] [21] foldl_impl @ ./reduce.jl:46 [inlined] [22] mapfoldl_impl @ ./reduce.jl:42 [inlined] [23] _mapreduce_dim @ ./reducedim.jl:335 [inlined] [24] mapreduce @ ./reducedim.jl:330 [inlined] [25] hom_map(F::Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}}, path::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:394 [26] top-level scope @ ~/.julia/packages/Catlab/1srGD/test/categorical_algebra/FinCats.jl:529 [27] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 [inlined] Categories: Error During Test at /home/pkgeval/.julia/packages/Catlab/1srGD/test/categorical_algebra/FinCats.jl:77 Test threw exception Expression: F ⋅ G == FinFunctor([1, 5], [[1, 2, 3, 4]], C, E) MethodError: no method matching has_part(::Catlab.Graphs.BasicGraphs.Graph, ::Symbol, ::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{0, Int64}}) The function `has_part` exists, but no method is defined for this combination of argument types. Closest candidates are: has_part(::Any, ::Symbol, !Matched::Int64) @ ACSets ~/.julia/packages/ACSets/arYE8/src/ACSetInterface.jl:102 has_part(::Any, ::Symbol, !Matched::AbstractVector{Int64}) @ ACSets ~/.julia/packages/ACSets/arYE8/src/ACSetInterface.jl:103 has_part(::ACSets.DenseACSets.StructACSet{S}, ::Symbol) where S @ ACSets ~/.julia/packages/ACSets/arYE8/src/DenseACSets.jl:467 ... Stacktrace: [1] has_edge(g::Catlab.Graphs.BasicGraphs.Graph, e::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{0, Int64}}) @ Catlab.Graphs.BasicGraphs ~/.julia/packages/Catlab/1srGD/src/graphs/BasicGraphs.jl:124 [2] (::Catlab.CategoricalAlgebra.FinCats.var"#Path##0#Path##1"{Catlab.Graphs.BasicGraphs.Graph})(e::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{0, Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:187 [3] _all @ ./anyall.jl:211 [inlined] [4] all @ ./reducedim.jl:996 [inlined] [5] Catlab.CategoricalAlgebra.FinCats.Path(g::Catlab.Graphs.BasicGraphs.Graph, es::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:187 [6] coerce_path(g::Catlab.Graphs.BasicGraphs.Graph, x::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:233 [7] (::Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}})(f::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ./none:-1 [8] MappingRF @ ./reduce.jl:98 [inlined] [9] afoldl(::Base.MappingRF{Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}, Base.BottomRF{typeof(vcat)}}, ::Base._InitialValue, ::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, ::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}) @ Base ./operators.jl:600 [10] _foldl_impl(op::Base.MappingRF{Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}, Base.BottomRF{typeof(vcat)}}, init::Base._InitialValue, itr::Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}) @ Base ./reduce.jl:66 [11] foldl_impl(op::Base.MappingRF{Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}, Base.BottomRF{typeof(vcat)}}, nt::Base._InitialValue, itr::Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}) @ Base ./reduce.jl:46 [12] mapfoldl_impl(f::typeof(identity), op::typeof(vcat), nt::Base._InitialValue, itr::Base.Generator{Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}, Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}}) @ Base ./reduce.jl:42 [13] mapfoldl(f::Function, op::Function, itr::Base.Generator{Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}, Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}}; init::Base._InitialValue) @ Base ./reduce.jl:173 [14] mapreduce(f::Function, op::Function, itr::Base.Generator{Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}, Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}}; kw::@Kwargs{}) @ Base ./reduce.jl:305 [15] reduce(op::Function, itr::Base.Generator{Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}, Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}}; kw::@Kwargs{}) @ Base ./reduce.jl:489 [16] compose(::Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, ::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, ::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:227 [17] (::Catlab.CategoricalAlgebra.FinCats.var"#hom_map##2#hom_map##3"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}})(::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, ::Vararg{Any}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:394 [18] BottomRF @ ./reduce.jl:84 [inlined] [19] MappingRF @ ./reduce.jl:98 [inlined] [20] _foldl_impl @ ./reduce.jl:60 [inlined] [21] foldl_impl @ ./reduce.jl:46 [inlined] [22] mapfoldl_impl @ ./reduce.jl:42 [inlined] [23] _mapreduce_dim @ ./reducedim.jl:335 [inlined] [24] mapreduce @ ./reducedim.jl:330 [inlined] [25] hom_map(F::Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}}, path::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:394 [26] #44 @ ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:556 [inlined] [27] iterate @ ./generator.jl:48 [inlined] [28] _collect(c::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}, itr::Base.Generator{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}, Catlab.CategoricalAlgebra.FinCats.var"#44#45"{Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}}}}, ::Base.EltypeUnknown, isz::Base.HasShape{1}) @ Base ./array.jl:816 [29] collect_similar @ ./array.jl:738 [inlined] [30] map @ ./abstractarray.jl:3386 [inlined] [31] #mapvals#80 @ ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:790 [inlined] [32] mapvals @ ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:785 [inlined] [33] do_compose(F::Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}}, G::Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:555 [34] compose_id @ ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/Categories.jl:310 [inlined] [35] macro expansion @ ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/Categories.jl:286 [inlined] [36] #compose#5 @ ./none:0 [inlined] [37] compose @ ./none:-1 [inlined] [38] ⋅(697::Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}}, 698::Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}}) @ Catlab.CategoricalAlgebra.Categories ./none:-1 [39] top-level scope @ ~/.julia/packages/Catlab/1srGD/test/categorical_algebra/FinCats.jl:529 [40] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 [inlined] WARNING: Detected access to binding `TestACSetsGATsInterop.Dendrogram` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestCSets.DDS` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestCSets.SetAttr` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestCSets.VELabeledGraph` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestCSets.A2` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestCSets.AbsMADGraph` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestCSets.Petri` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestHomSearch.SetAttr` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestHomSearch.##LSet#280` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestHomSearch.DDS` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestHomSearch.VELabeledGraph` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. CSets: Test Failed at /home/pkgeval/.julia/packages/Catlab/1srGD/test/categorical_algebra/HomSearch.jl:368 Expression: first(first(maximum_common_subobject(g1, g2; abstract = false))) == exp Evaluated: Catlab.Graphs.BasicGraphs.WeightedGraph{Bool}: V = 1:3 E = 1:1 Weight = 1:0 src : E → V = [2] tgt : E → V = [3] weight : E → Weight = Bool[0] == Catlab.Graphs.BasicGraphs.WeightedGraph{Bool}: V = 1:3 E = 1:1 Weight = 1:0 src : E → V = [1] tgt : E → V = [2] weight : E → Weight = Bool[0] Stacktrace: [1] top-level scope @ ~/.julia/packages/Catlab/1srGD/test/categorical_algebra/HomSearch.jl:529 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:741 [inlined] [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [4] top-level scope @ ~/.julia/packages/Catlab/1srGD/test/categorical_algebra/CategoricalAlgebra.jl:36 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [6] macro expansion @ ~/.julia/packages/Catlab/1srGD/test/categorical_algebra/CategoricalAlgebra.jl:38 [inlined] WARNING: Detected access to binding `TestHomSearch.AbsMADGraph` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestCatElements.Petri` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. Diagrams: Error During Test at /home/pkgeval/.julia/packages/Catlab/1srGD/test/categorical_algebra/CategoricalAlgebra.jl:42 Got exception outside of a @test LoadError: MethodError: no method matching has_part(::Catlab.Graphs.BasicGraphs.Graph, ::Symbol, ::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{0, Int64}}) The function `has_part` exists, but no method is defined for this combination of argument types. Closest candidates are: has_part(::Any, ::Symbol, !Matched::Int64) @ ACSets ~/.julia/packages/ACSets/arYE8/src/ACSetInterface.jl:102 has_part(::Any, ::Symbol, !Matched::AbstractVector{Int64}) @ ACSets ~/.julia/packages/ACSets/arYE8/src/ACSetInterface.jl:103 has_part(::ACSets.DenseACSets.StructACSet{S}, ::Symbol) where S @ ACSets ~/.julia/packages/ACSets/arYE8/src/DenseACSets.jl:467 ... Stacktrace: [1] has_edge(g::Catlab.Graphs.BasicGraphs.Graph, e::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{0, Int64}}) @ Catlab.Graphs.BasicGraphs ~/.julia/packages/Catlab/1srGD/src/graphs/BasicGraphs.jl:124 [2] (::Catlab.CategoricalAlgebra.FinCats.var"#Path##0#Path##1"{Catlab.Graphs.BasicGraphs.Graph})(e::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{0, Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:187 [3] _all @ ./anyall.jl:211 [inlined] [4] all @ ./reducedim.jl:996 [inlined] [5] Catlab.CategoricalAlgebra.FinCats.Path(g::Catlab.Graphs.BasicGraphs.Graph, es::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:187 [6] coerce_path(g::Catlab.Graphs.BasicGraphs.Graph, x::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:233 [7] hom(C::Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, f::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:230 [8] (::Catlab.CategoricalAlgebra.FinCats.var"#FinDomFunctor##10#FinDomFunctor##11"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}})(g::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:512 [9] iterate @ ./generator.jl:48 [inlined] [10] _collect @ ./array.jl:816 [inlined] [11] collect_similar @ ./array.jl:738 [inlined] [12] map @ ./abstractarray.jl:3386 [inlined] [13] mappairs @ ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:772 [inlined] [14] Functor @ ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:512 [inlined] [15] do_compose(F::Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{1, Int64}}}}, G::Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{1, Int64}}}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:555 [16] compose_id @ ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/Categories.jl:310 [inlined] [17] macro expansion @ ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/Categories.jl:286 [inlined] [18] #compose#5 @ ./none:0 [inlined] [19] compose @ ./none:-1 [inlined] [20] ⋅ @ ./none:-1 [inlined] [21] compose(f::Catlab.CategoricalAlgebra.Diagrams.SimpleDiagramHom{AlgebraicInterfaces.id, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{1, Int64}}}}, Catlab.CategoricalAlgebra.FinCats.FinTransformationMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}, Vector{Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}}, g::Catlab.CategoricalAlgebra.Diagrams.SimpleDiagramHom{AlgebraicInterfaces.id, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{1, Int64}}}}, Catlab.CategoricalAlgebra.FinCats.FinTransformationMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}, Vector{Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}}) @ Catlab.CategoricalAlgebra.Diagrams ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/Diagrams.jl:194 [22] ⋅(804::Catlab.CategoricalAlgebra.Diagrams.SimpleDiagramHom{AlgebraicInterfaces.id, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{1, Int64}}}}, Catlab.CategoricalAlgebra.FinCats.FinTransformationMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}, Vector{Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}}, 805::Catlab.CategoricalAlgebra.Diagrams.SimpleDiagramHom{AlgebraicInterfaces.id, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{1, Int64}}}}, Catlab.CategoricalAlgebra.FinCats.FinTransformationMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}, Vector{Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}}) @ Catlab.CategoricalAlgebra.Diagrams ./none:-1 [23] top-level scope @ ~/.julia/packages/Catlab/1srGD/test/categorical_algebra/Diagrams.jl:49 [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [25] top-level scope @ ~/.julia/packages/Catlab/1srGD/test/categorical_algebra/CategoricalAlgebra.jl:43 [26] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [27] macro expansion @ ~/.julia/packages/Catlab/1srGD/test/categorical_algebra/CategoricalAlgebra.jl:43 [inlined] [28] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [29] top-level scope @ ~/.julia/packages/Catlab/1srGD/test/runtests.jl:8 [30] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [31] macro expansion @ ~/.julia/packages/Catlab/1srGD/test/runtests.jl:8 [inlined] [32] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [33] top-level scope @ none:6 [34] eval(m::Module, e::Any) @ Core ./boot.jl:489 [35] exec_options(opts::Base.JLOptions) @ Base ./client.jl:290 [36] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Catlab/1srGD/test/categorical_algebra/Diagrams.jl:1 WARNING: Detected access to binding `TestChase.School` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestChase.Loop` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestFunctorialDataMigrations.AcsetSet` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestFunctorialDataMigrations.DDS` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestFunctorialDataMigrations.LabeledDDS` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestFunctorialDataMigrations.Thing1WithProp` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestFunctorialDataMigrations.Thing2WithProp` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestFunctorialDataMigrations.WG` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 75 running 1 of 1 signal (10): User defined signal 1 unknown function (ip: 0x71048c048061) at /lib/x86_64-linux-gnu/libc.so.6 unknown function (ip: 0x71048c04ae5c) at /lib/x86_64-linux-gnu/libc.so.6 malloc at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) operator new at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/new_op.cc:50 _ZN4llvm17DominatorTreeBaseINS_10BasicBlockELb0EE10createNodeEPS1_PNS_15DomTreeNodeBaseIS1_EE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm14DomTreeBuilder11SemiNCAInfoINS_17DominatorTreeBaseINS_10BasicBlockELb0EEEE16attachNewSubtreeERS4_PNS_15DomTreeNodeBaseIS3_EE.isra.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm14DomTreeBuilder11SemiNCAInfoINS_17DominatorTreeBaseINS_10BasicBlockELb0EEEE20CalculateFromScratchERS4_PNS5_15BatchUpdateInfoE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_18Verifier6verifyERKN4llvm8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm14verifyFunctionERKNS_8FunctionEPNS_11raw_ostreamE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) verifyLLVMIR at /source/src/pipeline.cpp:898 runOnLoop at /source/src/llvm-julia-licm.cpp:356 run at /source/src/llvm-julia-licm.cpp:381 run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE13runSinglePassIS1_St10unique_ptrINS_6detail11PassConceptIS1_S5_JS4_S7_EEESt14default_deleteISD_EEEESt8optionalINS_17PreservedAnalysesEERT_RT0_RS5_S4_S7_RNS_19PassInstrumentationE.isra.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE24runWithoutLoopNestPassesERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE3runERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm25FunctionToLoopPassAdaptor3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:791 operator() at /source/src/jitlayers.cpp:1518 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1479 [inlined] operator() at /source/src/jitlayers.cpp:1631 [inlined] addModule at /source/src/jitlayers.cpp:2088 jl_compile_codeinst_now at /source/src/jitlayers.cpp:683 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:883 jl_compile_method_internal at /source/src/gf.c:3305 _jl_invoke at /source/src/gf.c:3785 [inlined] ijl_apply_generic at /source/src/gf.c:3993 map at ./tuple.jl:362 [inlined] map at ./namedtuple.jl:263 unknown function (ip: 0x71041bb08016) at (unknown file) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 colimit at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/CSets.jl:953 #colimit#3 at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/Limits.jl:144 [inlined] colimit at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/Limits.jl:144 [inlined] #coproduct#84 at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/CSets.jl:795 [inlined] coproduct at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/CSets.jl:795 unknown function (ip: 0x710442d0e6e2) at (unknown file) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 copair at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/Limits.jl:260 unknown function (ip: 0x710442d0d522) at (unknown file) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 fire_triggers at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/Chase.jl:345 #chase_step#36 at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/Chase.jl:322 chase_step at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/Chase.jl:319 unknown function (ip: 0x7104765036bd) at (unknown file) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 chase at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/Chase.jl:283 unknown function (ip: 0x7104764fb920) at (unknown file) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 #_#5 at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/FunctorialDataMigrations.jl:229 SigmaMigrationFunctor at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/FunctorialDataMigrations.jl:204 unknown function (ip: 0x71042017daa2) at (unknown file) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 jl_apply at /source/src/julia.h:2345 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_eval_module_expr at /source/src/toplevel.c:196 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:658 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2847 _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 _include at ./loading.jl:2907 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_48990.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 jl_apply at /source/src/julia.h:2345 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_eval_module_expr at /source/src/toplevel.c:196 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:658 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2847 _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 _include at ./loading.jl:2907 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_48990.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 jl_apply at /source/src/julia.h:2345 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2847 _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 _include at ./loading.jl:2907 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_48990.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 jl_apply at /source/src/julia.h:2345 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 exec_options at ./client.jl:290 _start at ./client.jl:557 jfptr__start_66103.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 jl_apply at /source/src/julia.h:2345 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x71048bfda249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1213 wait_forever at ./task.jl:1150 jfptr_wait_forever_73068.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 jl_apply at /source/src/julia.h:2345 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000750da57c1960 Total snapshots: 469. Utilization: 0% ╎469 @Base/task.jl:1150 wait_forever() 468╎ 469 @Base/task.jl:1213 wait() [75] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/Catlab/1srGD/test/categorical_algebra/FunctorialDataMigrations.jl:281 _ZN4llvm13BasicAAResult5aliasERKNS_14MemoryLocationES3_RNS_11AAQueryInfoEPKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm9AAResults5aliasERKNS_14MemoryLocationES3_RNS_11AAQueryInfoEPKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13BasicAAResult8aliasGEPEPKNS_11GEPOperatorENS_12LocationSizeEPKNS_5ValueES4_S7_S7_RNS_11AAQueryInfoE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13BasicAAResult19aliasCheckRecursiveEPKNS_5ValueENS_12LocationSizeES3_S4_RNS_11AAQueryInfoES3_S3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13BasicAAResult10aliasCheckEPKNS_5ValueENS_12LocationSizeES3_S4_RNS_11AAQueryInfoEPKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13BasicAAResult5aliasERKNS_14MemoryLocationES3_RNS_11AAQueryInfoEPKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm9AAResults5aliasERKNS_14MemoryLocationES3_RNS_11AAQueryInfoEPKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm23MemoryDependenceResults30getSimplePointerDependencyFromERKNS_14MemoryLocationEbNS_21ilist_iterator_w_bitsINS_12ilist_detail12node_optionsINS_11InstructionELb1ELb0EvLb1ENS_10BasicBlockEEELb0ELb0EEEPS8_PS7_PjRNS_14BatchAAResultsE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm23MemoryDependenceResults24getPointerDependencyFromERKNS_14MemoryLocationEbNS_21ilist_iterator_w_bitsINS_12ilist_detail12node_optionsINS_11InstructionELb1ELb0EvLb1ENS_10BasicBlockEEELb0ELb0EEEPS8_PS7_PjRNS_14BatchAAResultsE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm23MemoryDependenceResults23getNonLocalInfoForBlockEPNS_11InstructionERKNS_14MemoryLocationEbPNS_10BasicBlockEPSt6vectorINS_16NonLocalDepEntryESaIS9_EEjRNS_14BatchAAResultsE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm23MemoryDependenceResults27getNonLocalPointerDepFromBBEPNS_11InstructionERKNS_12PHITransAddrERKNS_14MemoryLocationEbPNS_10BasicBlockERNS_15SmallVectorImplINS_17NonLocalDepResultEEERNS_13SmallDenseMapISA_PNS_5ValueELj16ENS_12DenseMapInfoISA_vEENS_6detail12DenseMapPairISA_SH_EEEEbb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm23MemoryDependenceResults28getNonLocalPointerDependencyEPNS_11InstructionERNS_15SmallVectorImplINS_17NonLocalDepResultEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass19processNonLocalLoadEPNS_8LoadInstE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass18processInstructionEPNS_11InstructionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass12processBlockEPNS_10BasicBlockE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass17iterateOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass7runImplERNS_8FunctionERNS_15AssumptionCacheERNS_13DominatorTreeERKNS_17TargetLibraryInfoERNS_9AAResultsEPNS_23MemoryDependenceResultsERNS_8LoopInfoEPNS_25OptimizationRemarkEmitterEPNS_9MemorySSAE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:791 operator() at /source/src/jitlayers.cpp:1518 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1479 [inlined] operator() at /source/src/jitlayers.cpp:1631 [inlined] addModule at /source/src/jitlayers.cpp:2088 jl_compile_codeinst_now at /source/src/jitlayers.cpp:683 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:883 jl_compile_method_internal at /source/src/gf.c:3305 _jl_invoke at /source/src/gf.c:3785 [inlined] ijl_apply_generic at /source/src/gf.c:3993 #homomorphism#2 at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/HomSearch.jl:107 homomorphism at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/HomSearch.jl:106 [inlined] #homomorphism#1 at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/HomSearch.jl:103 [inlined] homomorphism at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/HomSearch.jl:103 unknown function (ip: 0x71041bb802ed) at (unknown file) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 #extend_morphism#47 at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/Chase.jl:409 extend_morphism at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/Chase.jl:406 unknown function (ip: 0x710442d04e26) at (unknown file) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 #active_triggers#35 at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/Chase.jl:308 active_triggers at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/Chase.jl:300 unknown function (ip: 0x710442d24287) at (unknown file) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 #chase_step#36 at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/Chase.jl:329 chase_step at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/Chase.jl:319 unknown function (ip: 0x7104765036bd) at (unknown file) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 chase at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/Chase.jl:283 unknown function (ip: 0x7104764fb920) at (unknown file) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 #_#5 at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/FunctorialDataMigrations.jl:229 SigmaMigrationFunctor at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/FunctorialDataMigrations.jl:204 unknown function (ip: 0x71042017daa2) at (unknown file) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 jl_apply at /source/src/julia.h:2345 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_eval_module_expr at /source/src/toplevel.c:196 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:658 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2847 _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 _include at ./loading.jl:2907 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_48990.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3793 [inlined] ijl_apply_generic at /source/src/gf.c:3993 jl_apply at /source/src/julia.h:2345 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_eval_module_expr at /source/src/toplevel.c:196 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:658 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 PkgEval terminated after 2721.58s: test duration exceeded the time limit