Package evaluation of AlgebraicRewriting on Julia 1.13.0-DEV.834 (c3282ceaac*) started at 2025-07-08T17:59:36.810 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.23s ################################################################################ # Installation # Installing AlgebraicRewriting... Resolving package versions... ┌ Warning: tarball content does not match git-tree-sha1 └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:766 Cloning [227ef7b5-1206-438b-ac65-934d6da304b8] ACSets from https://github.com/AlgebraicJulia/ACSets.jl.git Installed ACSets ─ v0.2.24 Updating `~/.julia/environments/v1.13/Project.toml` [725a01d3] + AlgebraicRewriting v0.4.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [227ef7b5] + ACSets v0.2.24 [23cfdc9f] + AlgebraicInterfaces v0.1.4 [725a01d3] + AlgebraicRewriting v0.4.2 ⌃ [134e5e36] + Catlab v0.16.19 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [0fb5dd42] + CompTime v0.1.2 [34da2185] + Compat v4.17.0 [a81c6b42] + Compose v0.9.6 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [f0ffcf3b] + GATlab v0.1.4 [6b9d7cbe] + GeneralizedGenerated v0.3.3 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [b14d175d] + JuliaVariables v0.2.4 [b964fa9f] + LaTeXStrings v1.4.0 [9c8b4983] + LightXML v0.9.2 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [442fdcdd] + Measures v0.3.2 [71a1bf82] + NameResolution v0.1.5 [bac558e1] + OrderedCollections v1.8.1 [12d937ae] + PEG v1.0.4 [69de0a69] + Parsers v2.8.3 [2ae35dd2] + Permutations v0.4.23 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [8162dcfd] + PrettyPrint v0.2.0 [08abe8d2] + PrettyTables v2.4.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.1 [6ec83bb0] + StructEquality v2.1.0 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [94ce4f54] + Libiconv_jll v1.18.0+0 [02c8fc9c] + XML2_jll v2.14.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.14.1+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 6.54s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 6 direct dependencies failed to precompile: AlgebraicPetri Failed to precompile AlgebraicPetri [4f99eebe-17bf-4e98-b6a1-2c4f205a959b] to "/home/pkgeval/.julia/compiled/v1.13/AlgebraicPetri/jl_0Py6wG" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `ThCategory` not defined in `Catlab.Theories` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] #macroexpand#23 @ ./expr.jl:203 [inlined] [2] macroexpand(m::Module, x::Any) @ Base ./expr.jl:201 [3] var"@symbolic_model"(__source__::LineNumberNode, __module__::Module, decl::Any, theoryname::Any, body::Any) @ GATlab.Models.SymbolicModels ~/.julia/packages/GATlab/fO07H/src/models/SymbolicModels.jl:235 [4] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [6] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:37 [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [8] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:5 [9] include(mod::Module, _path::String) @ Base ./Base.jl:309 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3001 [11] top-level scope @ stdin:5 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [14] include_string @ ./loading.jl:2857 [inlined] [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [16] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:1 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Catlab [134e5e36-593f-5add-ad60-77f754baafbe] to "/home/pkgeval/.julia/compiled/v1.13/Catlab/jl_9Sk1El" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3288 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2653 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#236 @ ./reflection.jl:1332 [inlined] [8] invokelatest_gr @ ./reflection.jl:1324 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3859 [10] maybe_cachefile_lock @ ./loading.jl:3856 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2639 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2467 [13] macro expansion @ ./loading.jl:2395 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [16] require @ ./loading.jl:2336 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/AlgebraicPetri/WK5Qd/src/AlgebraicPetri.jl:21 [21] include(mod::Module, _path::String) @ Base ./Base.jl:309 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3001 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [26] include_string @ ./loading.jl:2857 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [28] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/AlgebraicPetri/WK5Qd/src/AlgebraicPetri.jl:1 in expression starting at stdin:5 AlgebraicRewritingLuxorExt Failed to precompile AlgebraicRewritingLuxorExt [16fe2ea7-00fe-5e1a-bc54-ba9a2e60b31d] to "/home/pkgeval/.julia/compiled/v1.13/AlgebraicRewritingLuxorExt/jl_sqcMLp" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `ThCategory` not defined in `Catlab.Theories` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] #macroexpand#23 @ ./expr.jl:203 [inlined] [2] macroexpand(m::Module, x::Any) @ Base ./expr.jl:201 [3] var"@symbolic_model"(__source__::LineNumberNode, __module__::Module, decl::Any, theoryname::Any, body::Any) @ GATlab.Models.SymbolicModels ~/.julia/packages/GATlab/fO07H/src/models/SymbolicModels.jl:235 [4] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [6] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:37 [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [8] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:5 [9] include(mod::Module, _path::String) @ Base ./Base.jl:309 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3001 [11] top-level scope @ stdin:5 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [14] include_string @ ./loading.jl:2857 [inlined] [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [16] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:1 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Catlab [134e5e36-593f-5add-ad60-77f754baafbe] to "/home/pkgeval/.julia/compiled/v1.13/Catlab/jl_JwGCSL" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3288 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2653 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#236 @ ./reflection.jl:1332 [inlined] [8] invokelatest_gr @ ./reflection.jl:1324 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3859 [10] maybe_cachefile_lock @ ./loading.jl:3856 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2639 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2467 [13] macro expansion @ ./loading.jl:2395 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [16] require @ ./loading.jl:2336 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/FinSets.jl:4 [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [22] top-level scope @ ~/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/CategoricalAlgebra.jl:10 [23] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [24] top-level scope @ ~/.julia/packages/AlgebraicRewriting/xBi5g/src/AlgebraicRewriting.jl:4 [25] include(mod::Module, _path::String) @ Base ./Base.jl:309 [26] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3001 [27] top-level scope @ stdin:5 [28] eval(m::Module, e::Any) @ Core ./boot.jl:489 [29] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [30] include_string @ ./loading.jl:2857 [inlined] [31] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [32] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/FinSets.jl:1 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/CategoricalAlgebra.jl:1 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/AlgebraicRewriting.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile AlgebraicRewriting [725a01d3-f174-5bbd-84e1-b9417bad95d9] to "/home/pkgeval/.julia/compiled/v1.13/AlgebraicRewriting/jl_Q3VHjN" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3288 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2653 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#236 @ ./reflection.jl:1332 [inlined] [8] invokelatest_gr @ ./reflection.jl:1324 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3859 [10] maybe_cachefile_lock @ ./loading.jl:3856 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2639 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2467 [13] macro expansion @ ./loading.jl:2395 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [16] require @ ./loading.jl:2336 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/AlgebraicRewriting/xBi5g/ext/AlgebraicRewritingLuxorExt.jl:2 [21] include(mod::Module, _path::String) @ Base ./Base.jl:309 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3001 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [26] include_string @ ./loading.jl:2857 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [28] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/ext/AlgebraicRewritingLuxorExt.jl:1 in expression starting at stdin:5 AlgebraicRewritingDataMigrationsExt Failed to precompile AlgebraicRewritingDataMigrationsExt [245abfa3-2f11-55a5-99ed-9a77e9d83e5a] to "/home/pkgeval/.julia/compiled/v1.13/AlgebraicRewritingDataMigrationsExt/jl_9DXcU0" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `ThCategory` not defined in `Catlab.Theories` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] #macroexpand#23 @ ./expr.jl:203 [inlined] [2] macroexpand(m::Module, x::Any) @ Base ./expr.jl:201 [3] var"@symbolic_model"(__source__::LineNumberNode, __module__::Module, decl::Any, theoryname::Any, body::Any) @ GATlab.Models.SymbolicModels ~/.julia/packages/GATlab/fO07H/src/models/SymbolicModels.jl:235 [4] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [6] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:37 [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [8] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:5 [9] include(mod::Module, _path::String) @ Base ./Base.jl:309 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3001 [11] top-level scope @ stdin:5 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [14] include_string @ ./loading.jl:2857 [inlined] [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [16] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:1 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Catlab [134e5e36-593f-5add-ad60-77f754baafbe] to "/home/pkgeval/.julia/compiled/v1.13/Catlab/jl_CMX9DB" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3288 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2653 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#236 @ ./reflection.jl:1332 [inlined] [8] invokelatest_gr @ ./reflection.jl:1324 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3859 [10] maybe_cachefile_lock @ ./loading.jl:3856 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2639 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2467 [13] macro expansion @ ./loading.jl:2395 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [16] require @ ./loading.jl:2336 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/AlgebraicRewriting/xBi5g/ext/AlgebraicRewritingDataMigrationsExt.jl:3 [21] include(mod::Module, _path::String) @ Base ./Base.jl:309 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3001 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [26] include_string @ ./loading.jl:2857 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [28] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/ext/AlgebraicRewritingDataMigrationsExt.jl:1 in expression starting at stdin:5 Catlab Failed to precompile Catlab [134e5e36-593f-5add-ad60-77f754baafbe] to "/home/pkgeval/.julia/compiled/v1.13/Catlab/jl_YYmfgG" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `ThCategory` not defined in `Catlab.Theories` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] #macroexpand#23 @ ./expr.jl:203 [inlined] [2] macroexpand(m::Module, x::Any) @ Base ./expr.jl:201 [3] var"@symbolic_model"(__source__::LineNumberNode, __module__::Module, decl::Any, theoryname::Any, body::Any) @ GATlab.Models.SymbolicModels ~/.julia/packages/GATlab/fO07H/src/models/SymbolicModels.jl:235 [4] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [6] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:37 [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [8] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:5 [9] include(mod::Module, _path::String) @ Base ./Base.jl:309 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3001 [11] top-level scope @ stdin:5 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [14] include_string @ ./loading.jl:2857 [inlined] [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [16] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:1 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 in expression starting at stdin:5 AlgebraicRewriting Failed to precompile AlgebraicRewriting [725a01d3-f174-5bbd-84e1-b9417bad95d9] to "/home/pkgeval/.julia/compiled/v1.13/AlgebraicRewriting/jl_QqHK27" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `ThCategory` not defined in `Catlab.Theories` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] #macroexpand#23 @ ./expr.jl:203 [inlined] [2] macroexpand(m::Module, x::Any) @ Base ./expr.jl:201 [3] var"@symbolic_model"(__source__::LineNumberNode, __module__::Module, decl::Any, theoryname::Any, body::Any) @ GATlab.Models.SymbolicModels ~/.julia/packages/GATlab/fO07H/src/models/SymbolicModels.jl:235 [4] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [6] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:37 [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [8] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:5 [9] include(mod::Module, _path::String) @ Base ./Base.jl:309 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3001 [11] top-level scope @ stdin:5 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [14] include_string @ ./loading.jl:2857 [inlined] [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [16] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:1 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Catlab [134e5e36-593f-5add-ad60-77f754baafbe] to "/home/pkgeval/.julia/compiled/v1.13/Catlab/jl_u8Mnf0" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3288 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2653 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#236 @ ./reflection.jl:1332 [inlined] [8] invokelatest_gr @ ./reflection.jl:1324 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3859 [10] maybe_cachefile_lock @ ./loading.jl:3856 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2639 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2467 [13] macro expansion @ ./loading.jl:2395 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [16] require @ ./loading.jl:2336 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/FinSets.jl:4 [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [22] top-level scope @ ~/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/CategoricalAlgebra.jl:10 [23] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [24] top-level scope @ ~/.julia/packages/AlgebraicRewriting/xBi5g/src/AlgebraicRewriting.jl:4 [25] include(mod::Module, _path::String) @ Base ./Base.jl:309 [26] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3001 [27] top-level scope @ stdin:5 [28] eval(m::Module, e::Any) @ Core ./boot.jl:489 [29] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [30] include_string @ ./loading.jl:2857 [inlined] [31] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [32] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/FinSets.jl:1 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/CategoricalAlgebra.jl:1 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/AlgebraicRewriting.jl:1 in expression starting at stdin:5 DataMigrations Failed to precompile DataMigrations [0c4ad18d-0c49-4bc2-90d5-5bca8f00d6ae] to "/home/pkgeval/.julia/compiled/v1.13/DataMigrations/jl_EDV4xK" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `ThCategory` not defined in `Catlab.Theories` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] #macroexpand#23 @ ./expr.jl:203 [inlined] [2] macroexpand(m::Module, x::Any) @ Base ./expr.jl:201 [3] var"@symbolic_model"(__source__::LineNumberNode, __module__::Module, decl::Any, theoryname::Any, body::Any) @ GATlab.Models.SymbolicModels ~/.julia/packages/GATlab/fO07H/src/models/SymbolicModels.jl:235 [4] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [6] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:37 [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [8] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:5 [9] include(mod::Module, _path::String) @ Base ./Base.jl:309 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3001 [11] top-level scope @ stdin:5 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [14] include_string @ ./loading.jl:2857 [inlined] [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [16] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:1 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Catlab [134e5e36-593f-5add-ad60-77f754baafbe] to "/home/pkgeval/.julia/compiled/v1.13/Catlab/jl_NtZ2GI" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3288 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2653 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#236 @ ./reflection.jl:1332 [inlined] [8] invokelatest_gr @ ./reflection.jl:1324 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3859 [10] maybe_cachefile_lock @ ./loading.jl:3856 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2639 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2467 [13] macro expansion @ ./loading.jl:2395 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [16] require @ ./loading.jl:2336 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/DataMigrations/S2hc3/src/Migrations.jl:10 [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [22] top-level scope @ ~/.julia/packages/DataMigrations/S2hc3/src/DataMigrations.jl:17 [23] include(mod::Module, _path::String) @ Base ./Base.jl:309 [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3001 [25] top-level scope @ stdin:5 [26] eval(m::Module, e::Any) @ Core ./boot.jl:489 [27] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [28] include_string @ ./loading.jl:2857 [inlined] [29] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [30] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/DataMigrations/S2hc3/src/Migrations.jl:1 in expression starting at /home/pkgeval/.julia/packages/DataMigrations/S2hc3/src/DataMigrations.jl:2 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 205.63s ################################################################################ # Testing # Testing AlgebraicRewriting Status `/tmp/jl_eDBoC2/Project.toml` [4f99eebe] AlgebraicPetri v0.9.2 [725a01d3] AlgebraicRewriting v0.4.2 ⌃ [134e5e36] Catlab v0.16.19 [0c4ad18d] DataMigrations v0.1.2 [864edb3b] DataStructures v0.18.22 [ae8d54c2] Luxor v4.3.0 [08abe8d2] PrettyTables v2.4.0 [295af30f] Revise v3.8.0 [6ec83bb0] StructEquality v2.1.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_eDBoC2/Manifest.toml` [227ef7b5] ACSets v0.2.24 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [23cfdc9f] AlgebraicInterfaces v0.1.4 [4f99eebe] AlgebraicPetri v0.9.2 [725a01d3] AlgebraicRewriting v0.4.2 [4fba245c] ArrayInterface v7.19.0 [159f3aea] Cairo v1.1.1 ⌃ [134e5e36] Catlab v0.16.19 [d360d2e6] ChainRulesCore v1.25.2 [da1fd8a2] CodeTracking v1.3.9 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 [bbf7d656] CommonSubexpressions v0.3.1 [0fb5dd42] CompTime v0.1.2 [34da2185] Compat v4.17.0 [807dbc54] Compiler v0.1.1 [a81c6b42] Compose v0.9.6 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [0c4ad18d] DataMigrations v0.1.2 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [c87230d0] FFMPEG v0.4.2 [5789e2e9] FileIO v1.17.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.0.1 ⌅ [f0ffcf3b] GATlab v0.1.4 [46192b85] GPUArraysCore v0.2.0 [6b9d7cbe] GeneralizedGenerated v0.3.3 [a2bd30eb] Graphics v1.1.3 [b5f81e59] IOCapture v0.2.5 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON 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[89763e89] Libtiff_jll v4.7.1+0 [38a345b3] Libuuid_jll v2.41.0+0 [e7412a2a] Ogg_jll v1.3.6+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [91d4177d] Opus_jll v1.5.2+0 [36c8627f] Pango_jll v1.56.3+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [02c8fc9c] XML2_jll v2.14.1+0 [ffd25f8a] XZ_jll v5.8.1+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [da03df04] gdk_pixbuf_jll v2.42.13+0 [a4ae2306] libaom_jll v3.11.0+0 ⌅ [0ac62f75] libass_jll v0.15.2+0 [f638f0a6] libfdk_aac_jll v2.0.4+0 [b53b4c65] libpng_jll v1.6.50+0 [f27f6e37] libvorbis_jll v1.3.8+0 ⌅ [1270edf5] x264_jll v2021.5.5+0 ⌅ [dfaa095f] x265_jll v3.5.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... ✗ Catlab Info Given AlgebraicRewriting was explicitly requested, output will be shown live  ERROR: LoadError: UndefVarError: `ThCategory` not defined in `Catlab.Theories` Suggestion: check for spelling errors or missing imports. Stacktrace:  [1] #macroexpand#23  @ ./expr.jl:203 [inlined]  [2] macroexpand(m::Module, x::Any)  @ Base ./expr.jl:201  [3] var"@symbolic_model"(__source__::LineNumberNode, __module__::Module, decl::Any, theoryname::Any, body::Any)  @ GATlab.Models.SymbolicModels ~/.julia/packages/GATlab/fO07H/src/models/SymbolicModels.jl:235  [4] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool)  @ Base ./flfrontend.jl:24  [5] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [6] top-level scope  @ ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:37  [7] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [8] top-level scope  @ ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:5  [9] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:3001  [11] top-level scope  @ stdin:5  [12] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2847  [14] include_string  @ ./loading.jl:2857 [inlined]  [15] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:322  [16] _start()  @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:1 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Catlab [134e5e36-593f-5add-ad60-77f754baafbe] to "/home/pkgeval/.julia/compiled/v1.13/Catlab/jl_KZSUmF" (ProcessExited(1)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3288  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2653  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115  [7] #invokelatest_gr#236  @ ./reflection.jl:1332 [inlined]  [8] invokelatest_gr  @ ./reflection.jl:1324 [inlined]  [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3859  [10] maybe_cachefile_lock  @ ./loading.jl:3856 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2639  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2467  [13] macro expansion  @ ./loading.jl:2395 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2360  [16] require  @ ./loading.jl:2336 [inlined]  [17] eval_import_path  @ ./module.jl:36 [inlined]  [18] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [19] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [20] top-level scope  @ ~/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/FinSets.jl:4  [21] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [22] top-level scope  @ ~/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/CategoricalAlgebra.jl:10  [23] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [24] top-level scope  @ ~/.julia/packages/AlgebraicRewriting/xBi5g/src/AlgebraicRewriting.jl:4  [25] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [26] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3001  [27] top-level scope  @ stdin:5  [28] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [29] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2847  [30] include_string  @ ./loading.jl:2857 [inlined]  [31] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:322  [32] _start()  @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/FinSets.jl:1 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/CategoricalAlgebra.jl:1 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/AlgebraicRewriting.jl:1 in expression starting at stdin:5 ✗ AlgebraicRewriting 0 dependencies successfully precompiled in 23 seconds. 83 already precompiled. ERROR: LoadError: The following 2 direct dependencies failed to precompile: Catlab Failed to precompile Catlab [134e5e36-593f-5add-ad60-77f754baafbe] to "/home/pkgeval/.julia/compiled/v1.13/Catlab/jl_QcurDu" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `ThCategory` not defined in `Catlab.Theories` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] #macroexpand#23 @ ./expr.jl:203 [inlined] [2] macroexpand(m::Module, x::Any) @ Base ./expr.jl:201 [3] var"@symbolic_model"(__source__::LineNumberNode, __module__::Module, decl::Any, theoryname::Any, body::Any) @ GATlab.Models.SymbolicModels ~/.julia/packages/GATlab/fO07H/src/models/SymbolicModels.jl:235 [4] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [6] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:37 [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [8] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:5 [9] include(mod::Module, _path::String) @ Base ./Base.jl:309 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3001 [11] top-level scope @ stdin:5 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [14] include_string @ ./loading.jl:2857 [inlined] [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [16] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:1 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 in expression starting at stdin:5 AlgebraicRewriting Failed to precompile AlgebraicRewriting [725a01d3-f174-5bbd-84e1-b9417bad95d9] to "/home/pkgeval/.julia/compiled/v1.13/AlgebraicRewriting/jl_WMQulD" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `ThCategory` not defined in `Catlab.Theories` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] #macroexpand#23 @ ./expr.jl:203 [inlined] [2] macroexpand(m::Module, x::Any) @ Base ./expr.jl:201 [3] var"@symbolic_model"(__source__::LineNumberNode, __module__::Module, decl::Any, theoryname::Any, body::Any) @ GATlab.Models.SymbolicModels ~/.julia/packages/GATlab/fO07H/src/models/SymbolicModels.jl:235 [4] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [6] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:37 [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [8] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:5 [9] include(mod::Module, _path::String) @ Base ./Base.jl:309 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3001 [11] top-level scope @ stdin:5 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [14] include_string @ ./loading.jl:2857 [inlined] [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [16] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:1 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Catlab [134e5e36-593f-5add-ad60-77f754baafbe] to "/home/pkgeval/.julia/compiled/v1.13/Catlab/jl_KZSUmF" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3288 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2653 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#236 @ ./reflection.jl:1332 [inlined] [8] invokelatest_gr @ ./reflection.jl:1324 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3859 [10] maybe_cachefile_lock @ ./loading.jl:3856 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2639 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2467 [13] macro expansion @ ./loading.jl:2395 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2360 [16] require @ ./loading.jl:2336 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/FinSets.jl:4 [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [22] top-level scope @ ~/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/CategoricalAlgebra.jl:10 [23] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [24] top-level scope @ ~/.julia/packages/AlgebraicRewriting/xBi5g/src/AlgebraicRewriting.jl:4 [25] include(mod::Module, _path::String) @ Base ./Base.jl:309 [26] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3001 [27] top-level scope @ stdin:5 [28] eval(m::Module, e::Any) @ Core ./boot.jl:489 [29] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2847 [30] include_string @ ./loading.jl:2857 [inlined] [31] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [32] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/FinSets.jl:1 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/CategoricalAlgebra.jl:1 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/AlgebraicRewriting.jl:1 in expression starting at stdin:5 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/test/runtests.jl:4 Testing failed after 35.06s ERROR: LoadError: Package AlgebraicRewriting errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2446 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2301 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:500 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:309 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:324 [12] _start() @ Base ./client.jl:557 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 278.06s: package fails to precompile