Package evaluation of PointNeighbors on Julia 1.13.0-DEV.820 (69a2a571e8*) started at 2025-07-07T12:03:42.851 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.47s ################################################################################ # Installation # Installing PointNeighbors... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [1c4d5385] + PointNeighbors v0.6.3 Updating `~/.julia/environments/v1.13/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [4fba245c] + ArrayInterface v7.19.0 [a9b6321e] + Atomix v1.1.1 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.6 [fb6a15b2] + CloseOpenIntervals v0.1.13 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.17.0 [adafc99b] + CpuId v0.3.1 [46192b85] + GPUArraysCore v0.2.0 [615f187c] + IfElse v0.1.1 [63c18a36] + KernelAbstractions v0.9.36 [10f19ff3] + LayoutPointers v0.1.17 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [1c4d5385] + PointNeighbors v0.6.3 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [94e857df] + SIMDTypes v0.1.0 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [7792a7ef] + StrideArraysCore v0.5.7 [8290d209] + ThreadingUtilities v0.5.5 [013be700] + UnsafeAtomics v0.3.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Installation completed after 3.67s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 584.49s ################################################################################ # Testing # Testing PointNeighbors Status `/tmp/jl_qUWi2T/Project.toml` [6e4b80f9] BenchmarkTools v1.6.0 [91a5bcdd] Plots v1.40.16 [1c4d5385] PointNeighbors v0.6.3 [66699cd8] TrixiParticles v0.3.1 [0a316866] TrixiTest v0.1.1 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_qUWi2T/Manifest.toml` [47edcb42] ADTypes v1.15.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.19.0 [a9b6321e] Atomix v1.1.1 [6e4b80f9] BenchmarkTools v1.6.0 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] CPUSummary v0.2.6 [336ed68f] CSV v0.10.15 [3cb15238] ChangePrecision v1.1.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.30.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [38540f10] 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Testing Running tests... WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in pushat!(PointNeighbors.DynamicVectorOfVectors{T, ARRAY2D, ARRAY1D, L} where L where ARRAY1D where ARRAY2D where T, Any, Any) at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/src/vector_of_vectors.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in var"#update_grid!#71"(Any, Any, typeof(PointNeighbors.update_grid!), Union{PointNeighbors.GridNeighborhoodSearch{var"#s6", PointNeighbors.SemiParallelUpdate, CL, ELTYPE, PB, UB} where UB where PB where ELTYPE where CL where var"#s6", PointNeighbors.GridNeighborhoodSearch{var"#s7", PointNeighbors.SerialIncrementalUpdate, CL, ELTYPE, PB, UB} where UB where PB where ELTYPE where CL where var"#s7"}, AbstractArray{T, 2} where T) at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/src/nhs_grid.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in push_cell!(PointNeighbors.FullGridCellList{C, LI, MINC, MAXC} where MAXC where MINC where LI where C, Any, Any) at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/src/cell_lists/full_grid.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in var"#initialize_grid!#66"(Any, Any, typeof(PointNeighbors.initialize_grid!), PointNeighbors.GridNeighborhoodSearch{var"#s7", PointNeighbors.ParallelUpdate, CL, ELTYPE, PB, UB} where UB where PB where ELTYPE where CL where var"#s7", AbstractArray{T, 2} where T) at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/src/nhs_grid.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in var"#update_grid!#76"(Any, Any, typeof(PointNeighbors.update_grid!), PointNeighbors.GridNeighborhoodSearch{var"#s109", PointNeighbors.ParallelIncrementalUpdate, CL, ELTYPE, PB, UB} where UB where PB where ELTYPE where CL where var"#s109", AbstractArray{T, 2} where T) at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/src/nhs_grid.jl Precompiling packages... 3373.7 ms ✓ BenchmarkTools 1 dependency successfully precompiled in 4 seconds. 16 already precompiled. WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in __init() at /home/pkgeval/.julia/packages/VectorizedRNG/2TXSb/src/VectorizedRNG.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initXoshiro!(Ptr{UInt64}, Any, UInt64, UInt64, UInt64, UInt64) at /home/pkgeval/.julia/packages/VectorizedRNG/2TXSb/src/xoshiro.jl WARNING: Method definition point_cloud(Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/test/point_cloud.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Main.point_cloud), Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/test/point_cloud.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition perturb!(Any, Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/test/point_cloud.jl:22 overwritten on the same line (check for duplicate calls to `include`). Precompiling packages... 5014.1 ms ✓ EpollShim_jll 5462.6 ms ✓ StatsBase 1683.1 ms ✓ Qt6ShaderTools_jll 1897.8 ms ✓ Qt6Declarative_jll 1815.0 ms ✓ Qt6Wayland_jll 115562.6 ms ✓ Plots 21409.4 ms ✓ Plots → UnitfulExt 7 dependencies successfully precompiled in 154 seconds. 174 already precompiled. Precompiling packages... 3432.4 ms ✓ KernelAbstractions → SparseArraysExt 1 dependency successfully precompiled in 4 seconds. 34 already precompiled. Precompiling packages... 3635.2 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 1 dependency successfully precompiled in 4 seconds. 51 already precompiled. Precompiling packages... 1667.8 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 1 dependency successfully precompiled in 2 seconds. 23 already precompiled. Precompiling packages... 5521.0 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 1 dependency successfully precompiled in 6 seconds. 102 already precompiled. Precompiling packages... 1691.7 ms ✓ ColorVectorSpace → SpecialFunctionsExt 1 dependency successfully precompiled in 2 seconds. 51 already precompiled. Precompiling packages... 7360.3 ms ✓ FileIO → HTTPExt 23277.2 ms ✓ Plots → FileIOExt 2 dependencies successfully precompiled in 32 seconds. 182 already precompiled. WARNING: Method definition point_cloud(Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/test/point_cloud.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Main.point_cloud), Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/test/point_cloud.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition perturb!(Any, Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/test/point_cloud.jl:22 overwritten on the same line (check for duplicate calls to `include`). TrivialNeighborhoodSearch with 50 = 50 particles finished in 4.292 μs GridNeighborhoodSearch with 50 = 50 particles finished in 4.106 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 1.160 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 96.449 μs GridNeighborhoodSearch with 200 = 200 particles finished in 17.160 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 4.557 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 8.979 μs GridNeighborhoodSearch with 50 = 50 particles finished in 5.102 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 2.724 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 85.869 μs GridNeighborhoodSearch with 200 = 200 particles finished in 21.900 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 13.990 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 14.570 μs GridNeighborhoodSearch with 50 = 50 particles finished in 12.679 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 9.740 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 136.749 μs GridNeighborhoodSearch with 200 = 200 particles finished in 68.650 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 59.930 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 14.800 μs GridNeighborhoodSearch with 50 = 50 particles finished in 17.090 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 13.230 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 192.998 μs GridNeighborhoodSearch with 200 = 200 particles finished in 69.410 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 53.550 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 15.020 μs GridNeighborhoodSearch with 50 = 50 particles finished in 13.489 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 10.370 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 129.069 μs GridNeighborhoodSearch with 200 = 200 particles finished in 54.720 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 19.739 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 3.220 ns GridNeighborhoodSearch with 50 = 50 particles finished in 3.592 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 11.270 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 3.250 ns GridNeighborhoodSearch with 200 = 200 particles finished in 14.090 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 48.870 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 1.955 ns GridNeighborhoodSearch with 50 = 50 particles finished in 826.500 ns PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 8.345 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 1.935 ns GridNeighborhoodSearch with 200 = 200 particles finished in 2.963 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 35.385 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 33.250 μs GridNeighborhoodSearch with 10x10 = 100 particles finished in 36.080 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 9.579 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 542.395 μs GridNeighborhoodSearch with 20x20 = 400 particles finished in 274.947 μs PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 42.380 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 79.869 μs GridNeighborhoodSearch with 10x10 = 100 particles finished in 74.459 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 49.439 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 1.065 ms GridNeighborhoodSearch with 20x20 = 400 particles finished in 478.425 μs PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 238.937 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 195.878 μs GridNeighborhoodSearch with 10x10 = 100 particles finished in 190.498 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 163.908 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 1.775 ms GridNeighborhoodSearch with 20x20 = 400 particles finished in 1.001 ms PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 761.902 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 203.378 μs GridNeighborhoodSearch with 10x10 = 100 particles finished in 202.388 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 162.039 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 1.845 ms GridNeighborhoodSearch with 20x20 = 400 particles finished in 1.051 ms PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 746.982 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 204.818 μs GridNeighborhoodSearch with 10x10 = 100 particles finished in 219.128 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 178.938 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 1.860 ms GridNeighborhoodSearch with 20x20 = 400 particles finished in 1.163 ms PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 852.881 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 3.790 ns GridNeighborhoodSearch with 10x10 = 100 particles finished in 6.468 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 72.499 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 3.780 ns GridNeighborhoodSearch with 20x20 = 400 particles finished in 25.790 μs PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 502.205 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 2.125 ns GridNeighborhoodSearch with 10x10 = 100 particles finished in 1.898 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 73.574 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 2.065 ns GridNeighborhoodSearch with 20x20 = 400 particles finished in 6.190 μs PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 469.786 μs TrivialNeighborhoodSearch with 5x5x5 = 125 particles finished in 91.380 μs GridNeighborhoodSearch with 5x5x5 = 125 particles finished in 166.978 μs PrecomputedNeighborhoodSearch with 5x5x5 = 125 particles finished in 34.400 μs TrivialNeighborhoodSearch with 8x8x8 = 512 particles finished in 1.590 ms GridNeighborhoodSearch with 8x8x8 = 512 particles finished in 1.730 ms PrecomputedNeighborhoodSearch with 8x8x8 = 512 particles finished in 208.717 μs TrivialNeighborhoodSearch with 5x5x5 = 125 particles finished in 287.547 μs GridNeighborhoodSearch with 5x5x5 = 125 particles finished in 349.596 μs PrecomputedNeighborhoodSearch with 5x5x5 = 125 particles finished in 210.528 μs TrivialNeighborhoodSearch with 8x8x8 = 512 particles finished in 3.078 ms GridNeighborhoodSearch with 8x8x8 = 512 particles finished in 2.541 ms PrecomputedNeighborhoodSearch with 8x8x8 = 512 particles finished in 1.248 ms TrivialNeighborhoodSearch with 5x5x5 = 125 particles finished in 616.273 μs GridNeighborhoodSearch with 5x5x5 = 125 particles finished in 704.883 μs PrecomputedNeighborhoodSearch with 5x5x5 = 125 particles finished in 567.854 μs TrivialNeighborhoodSearch with 8x8x8 = 512 particles finished in 5.277 ms GridNeighborhoodSearch with 8x8x8 = 512 particles finished in 5.089 ms PrecomputedNeighborhoodSearch with 8x8x8 = 512 particles finished in 3.214 ms TrivialNeighborhoodSearch with 5x5x5 = 125 particles finished in 608.784 μs GridNeighborhoodSearch with 5x5x5 = 125 particles finished in 712.233 μs PrecomputedNeighborhoodSearch with 5x5x5 = 125 particles finished in 549.835 μs TrivialNeighborhoodSearch with 8x8x8 = 512 particles finished in 5.328 ms GridNeighborhoodSearch with 8x8x8 = 512 particles finished in 4.986 ms PrecomputedNeighborhoodSearch with 8x8x8 = 512 particles finished in 3.300 ms TrivialNeighborhoodSearch with 5x5x5 = 125 particles finished in 856.201 μs GridNeighborhoodSearch with 5x5x5 = 125 particles finished in 1.042 ms PrecomputedNeighborhoodSearch with 5x5x5 = 125 particles finished in 698.433 μs TrivialNeighborhoodSearch with 8x8x8 = 512 particles finished in 4.951 ms ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1213 wait_forever at ./task.jl:1150 jfptr_wait_forever_68907.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3798 [inlined] ijl_apply_generic at /source/src/gf.c:3998 jl_apply at /source/src/julia.h:2345 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007e27bcdaee00 Total snapshots: 439. Utilization: 0% ╎439 @Base/task.jl:1150 wait_forever() 438╎ 439 @Base/task.jl:1213 wait() GridNeighborhoodSearch PkgEval terminated after 2752.37s: test duration exceeded the time limit