Package evaluation of LaMEM on Julia 1.13.0-DEV.811 (41570e9800*) started at 2025-07-04T03:59:32.265 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.33s ################################################################################ # Installation # Installing LaMEM... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [2e889f3d] + LaMEM v0.4.7 Updating `~/.julia/environments/v1.13/Manifest.toml` [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.7 [7b0aa2c9] + BibTeX v0.1.0 [fa961155] + CEnum v0.5.0 [d360d2e6] + ChainRulesCore v1.25.2 [944b1d66] + CodecZlib v0.7.8 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.17.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [150eb455] + CoordinateTransformations v0.6.4 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [411431e0] + Extents v0.1.6 [c87230d0] + FFMPEG v0.4.2 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [f6369f11] + ForwardDiff v0.10.38 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.4.1 ⌅ [e018b62d] + GeoParams v0.6.8 [0ef565a4] + Geodesy v1.1.0 ⌅ [5c1252a2] + GeometryBasics v0.4.11 ⌃ [3700c31b] + GeophysicalModelGenerator v0.7.4 [c27321d9] + Glob v1.3.1 [615f187c] + IfElse v0.1.1 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [7d512f48] + InternedStrings v0.7.0 ⌅ [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.54 [692b3bcd] + JLLWrappers v1.7.0 [b835a17e] + JpegTurbo v0.1.6 [49dc5b4e] + KernelDensitySJ v0.2.1 [2e889f3d] + LaMEM v0.4.7 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [9c8b4983] + LightXML v0.9.2 [4345ca2d] + Loess v0.6.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [da04e1cc] + MPI v0.20.22 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [dbb5928d] + MappedArrays v0.4.2 ⌅ [7269a6da] + MeshIO v0.4.13 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [46d2c3a1] + MuladdMacro v0.2.4 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.21 [f09324ee] + Netpbm v1.1.1 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 [bac558e1] + OrderedCollections v1.8.1 [f57f5aa1] + PNGFiles v0.4.4 [5432bcbf] + PaddedViews v0.5.12 [d96e819e] + Parameters v0.12.3 [eebad327] + PkgVersion v0.3.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [4b34888f] + QOI v1.0.1 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [dc215faf] + ReadVTK v0.2.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [f2b01f46] + Roots v2.2.8 [fdea26ae] + SIMD v3.7.1 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.4 [45858cf5] + Sixel v0.1.5 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [cae243ae] + StackViews v0.1.2 ⌅ [aedffcd0] + Static v0.8.10 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 ⌅ [09ab397b] + StructArrays v0.6.21 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [731e570b] + TiffImages v0.11.4 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [967fb449] + Unidecode v1.2.0 [1986cc42] + Unitful v1.23.1 [4004b06d] + VTKBase v1.0.1 [e3aaa7dc] + WebP v0.1.3 [efce3f68] + WoodburyMatrices v1.0.0 [64499a7a] + WriteVTK v1.21.2 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [5ae413db] + EarCut_jll v2.2.4+0 [2e619515] + Expat_jll v2.6.5+0 ⌅ [b22a6f82] + FFMPEG_jll v4.4.4+1 [a3f928ae] + Fontconfig_jll v2.16.0+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [59f7168a] + Giflib_jll v5.2.3+0 [7746bdde] + Glib_jll v2.84.3+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [905a6f67] + Imath_jll v3.1.11+0 [aacddb02] + JpegTurbo_jll v3.1.1+0 [c1c5ebd0] + LAME_jll v3.100.2+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 ⌅ [15d6fa20] + LaMEM_jll v2.1.4+0 [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.0+0 [89763e89] + Libtiff_jll v4.7.1+0 [38a345b3] + Libuuid_jll v2.41.0+0 ⌅ [7cb0a576] + MPICH_jll v4.1.2+1 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [e7412a2a] + Ogg_jll v1.3.5+1 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [18a262bb] + OpenEXR_jll v3.2.4+0 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.3.3+0 ⌅ [8fa3689e] + PETSc_jll v3.19.6+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [aabda75e] + SCALAPACK32_jll v2.2.1+1 [02c8fc9c] + XML2_jll v2.14.1+0 [ffd25f8a] + XZ_jll v5.8.1+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [a4ae2306] + libaom_jll v3.11.0+0 ⌅ [0ac62f75] + libass_jll v0.15.2+0 [f638f0a6] + libfdk_aac_jll v2.0.3+0 [b53b4c65] + libpng_jll v1.6.49+0 [075b6546] + libsixel_jll v1.10.5+0 [f27f6e37] + libvorbis_jll v1.3.7+2 [c5f90fcd] + libwebp_jll v1.5.0+0 ⌅ [1270edf5] + x264_jll v2021.5.5+0 ⌅ [dfaa095f] + x265_jll v3.5.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.14.1+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 12.32s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.11/activate_set.jl:75 Precompiling package dependencies... Precompilation completed after 1996.15s ################################################################################ # Testing # Testing LaMEM Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_WqHooq/Project.toml` [13f3f980] + CairoMakie v0.15.2 [e018b62d] ↑ GeoParams v0.6.8 ⇒ v0.7.4 [3700c31b] ↑ GeophysicalModelGenerator v0.7.4 ⇒ v0.7.14 [2e889f3d] + LaMEM v0.4.7 [91a5bcdd] + Plots v1.40.15 Updating `/tmp/jl_WqHooq/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [35492f91] + AdaptivePredicates v1.2.0 [27a7e980] + Animations v0.4.2 [67c07d97] + Automa v1.1.0 [18cc8868] + BaseDirs v1.3.0 [d1d4a3ce] + BitFlags v0.1.9 ⌅ [179af706] + CFTime v0.1.4 [96374032] + CRlibm v1.0.2 [159f3aea] + Cairo v1.1.1 [13f3f980] + CairoMakie v0.15.2 [a2cac450] + ColorBrewer v0.4.1 [35d6a980] + ColorSchemes v3.29.0 [1fbeeb36] + CommonDataModel v0.3.8 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [95dc2771] + ComputePipeline v0.1.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [d38c429a] + Contour v0.6.3 [927a84f5] + DelaunayTriangulation v1.6.4 [3c3547ce] + DiskArrays v0.4.13 [31c24e10] + Distributions v0.25.120 [4e289a0a] + EnumX v1.0.5 [429591f6] + ExactPredicates v2.2.8 [460bff9d] + ExceptionUnwrapping v0.1.11 [7a1cc6ca] + FFTW v1.9.0 ⌅ [8fc22ac5] + FilePaths v0.8.3 [48062228] + FilePathsBase v0.9.24 [1fa38f19] + Format v1.3.7 [f6369f11] ↑ ForwardDiff v0.10.38 ⇒ v1.0.1 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.8 ⌃ [28b8d3ca] + GR v0.73.7 [e018b62d] ↑ GeoParams v0.6.8 ⇒ v0.7.4 [5c1252a2] ↑ GeometryBasics v0.4.11 ⇒ v0.5.9 [3700c31b] ↑ GeophysicalModelGenerator v0.7.4 ⇒ v0.7.14 [a2bd30eb] + Graphics v1.1.3 [3955a311] + GridLayoutBase v0.11.1 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.17 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [d1acc4aa] + IntervalArithmetic v0.22.36 [f1662d9f] + Isoband v0.1.1 [033835bb] ↑ JLD2 v0.4.54 ⇒ v0.5.15 [1019f520] + JLFzf v0.1.11 [682c06a0] + JSON v0.21.4 [5ab0869b] + KernelDensity v0.6.9 [8ac3fa9e] + LRUCache v1.6.2 [2e889f3d] + LaMEM v0.4.7 [23fbe1c1] + Latexify v0.16.8 [e6f89c97] + LoggingExtras v1.1.0 [ee78f7c6] + Makie v0.24.2 [0a4f8689] + MathTeXEngine v0.6.5 [739be429] + MbedTLS v1.1.9 [442fdcdd] + Measures v0.3.2 [7269a6da] ↑ MeshIO v0.4.13 ⇒ v0.5.3 [85f8d34a] + NCDatasets v0.14.8 [510215fc] + Observables v0.5.5 [4d8831e6] + OpenSSL v1.5.0 [90014a1f] + PDMats v0.11.35 [19eb6ba3] + Packing v0.5.1 [69de0a69] + Parsers v2.8.3 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.3 [91a5bcdd] + Plots v1.40.15 [647866c9] + PolygonOps v0.1.2 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [01d81517] + RecipesPipeline v0.6.12 [05181044] + RelocatableFolders v1.0.1 [79098fc4] + Rmath v0.8.0 [5eaf0fd0] + RoundingEmulator v0.2.1 [7e506255] + ScopedValues v1.3.0 [6c6a2e73] + Scratch v1.3.0 [65257c39] + ShaderAbstractions v0.5.0 [992d4aef] + Showoff v1.0.3 [73760f76] + SignedDistanceFields v0.4.0 [777ac1f9] + SimpleBufferStream v1.2.0 [860ef19b] + StableRNGs v1.0.3 [aedffcd0] ↑ Static v0.8.10 ⇒ v1.2.0 [4c63d2b9] + StatsFuns v1.5.0 [09ab397b] ↑ StructArrays v0.6.21 ⇒ v0.7.1 [981d1d27] + TriplotBase v0.1.0 [5c2747f8] + URIs v1.6.1 [1cfade01] + UnicodeFun v0.4.1 [45397f5d] + UnitfulLatexify v1.7.0 [41fe7b60] + Unzip v0.2.0 ⌃ [ea906314] + WhereTheWaterFlows v0.10.2 ⌅ [8ce61222] + Arrow_jll v10.0.1+0 [0b7ba130] + Blosc_jll v1.21.7+0 [4e9b3aee] + CRlibm_jll v1.0.1+0 [ee1fde0b] + Dbus_jll v1.16.2+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [f5851436] + FFTW_jll v3.3.11+0 ⌅ [a7073274] + GDAL_jll v301.900.0+0 [d604d12d] + GEOS_jll v3.13.1+1 [0656b61e] + GLFW_jll v3.4.0+2 ⌅ [d2c73de3] + GR_jll v0.73.7+0 ⌅ [0234f1f7] + HDF5_jll v1.14.3+3 [e33a78d0] - Hwloc_jll v2.12.1+0 [a51ab1cf] + ICU_jll v76.2.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [b39eb1a6] + Kerberos_krb5_jll v1.21.3+0 ⌅ [88015f11] ↓ LERC_jll v4.0.1+0 ⇒ v3.0.0+1 [08be9ffa] + LibPQ_jll v16.8.0+0 ⌅ [89763e89] ↓ Libtiff_jll v4.7.1+0 ⇒ v4.5.1+1 [d3a379c0] + LittleCMS_jll v2.16.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [856f044c] + MKL_jll v2025.0.1+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+2 ⌅ [7243133f] + NetCDF_jll v400.902.211+1 [6cdc7f73] + OpenBLASConsistentFPCSR_jll v0.3.29+0 [643b3616] + OpenJpeg_jll v2.5.4+0 ⌅ [fe0851c0] ↓ OpenMPI_jll v5.0.8+0 ⇒ v4.1.8+1 ⌅ [58948b4f] + PROJ_jll v901.300.0+1 [36c8627f] + Pango_jll v1.56.3+0 ⌅ [c0090381] + Qt6Base_jll v6.7.1+1 ⌅ [629bc702] + Qt6Declarative_jll v6.7.1+2 ⌅ [ce943373] + Qt6ShaderTools_jll v6.7.1+1 ⌃ [e99dba38] + Qt6Wayland_jll v6.7.1+1 [f50d1b31] + Rmath_jll v0.5.1+0 [76ed43ae] + SQLite_jll v3.48.0+0 ⌅ [e0b8ae26] + Thrift_jll v0.16.0+0 [a44049a8] + Vulkan_Loader_jll v1.3.243+0 [a2964d1f] + Wayland_jll v1.23.1+1 ⌅ [02c8fc9c] ↓ XML2_jll v2.14.1+0 ⇒ v2.13.6+1 [f67eecfb] + Xorg_libICE_jll v1.1.2+0 [c834827a] + Xorg_libSM_jll v1.2.6+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.1+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.6+0 [ec84b674] + Xorg_libXrandr_jll v1.5.5+0 [cc61e674] + Xorg_libxkbfile_jll v1.1.3+0 [e920d4aa] + Xorg_xcb_util_cursor_jll v0.1.5+0 [12413925] + Xorg_xcb_util_image_jll v0.4.1+0 [2def613f] + Xorg_xcb_util_jll v0.4.1+0 [975044d2] + Xorg_xcb_util_keysyms_jll v0.4.1+0 [0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.10+0 [c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.2+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 ⌅ [28df3c45] + boost_jll v1.76.0+1 [35ca27e7] + eudev_jll v3.2.14+0 [214eeab7] + fzf_jll v0.61.1+0 [9a68df92] + isoband_jll v0.2.3+0 [477f73a3] + libaec_jll v1.1.3+0 [1183f4f0] + libdecor_jll v0.2.2+0 [2db6ffa8] + libevdev_jll v1.13.4+0 ⌃ [06c338fa] + libgeotiff_jll v100.701.300+0 [36db933b] + libinput_jll v1.28.1+0 ⌃ [c5f90fcd] ↓ libwebp_jll v1.5.0+0 ⇒ v1.4.0+0 [337d8026] + libzip_jll v1.11.3+0 [009596ad] + mtdev_jll v1.1.7+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [fe1e1685] + snappy_jll v1.2.3+0 [d8fb68d0] + xkbcommon_jll v1.9.2+0 [8bf52ea8] + CRC32c v1.11.0 [4607b0f0] + SuiteSparse Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_WqHooq/Project.toml` [13f3f980] CairoMakie v0.15.2 [8bb1440f] DelimitedFiles v1.9.1 [ffbed154] DocStringExtensions v0.9.5 [e018b62d] GeoParams v0.7.4 [3700c31b] GeophysicalModelGenerator v0.7.14 [c27321d9] Glob v1.3.1 ⌅ [a98d9a8b] Interpolations v0.15.1 [2e889f3d] LaMEM v0.4.7 [9c8b4983] LightXML v0.9.2 [da04e1cc] MPI v0.20.22 [3da0fdf6] MPIPreferences v0.1.11 [91a5bcdd] Plots v1.40.15 [dc215faf] ReadVTK v0.2.4 [10745b16] Statistics v1.11.1 [64499a7a] WriteVTK v1.21.2 ⌅ [15d6fa20] LaMEM_jll v2.1.4+0 ⌅ [7cb0a576] MPICH_jll v4.1.2+1 [8dfed614] Test v1.11.0 Status `/tmp/jl_WqHooq/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [18cc8868] BaseDirs v1.3.0 [7b0aa2c9] BibTeX v0.1.0 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 ⌅ [179af706] CFTime v0.1.4 [96374032] CRlibm v1.0.2 [159f3aea] Cairo v1.1.1 [13f3f980] CairoMakie v0.15.2 [d360d2e6] ChainRulesCore v1.25.2 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.1 [35d6a980] ColorSchemes v3.29.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [1fbeeb36] CommonDataModel v0.3.8 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.17.0 [a33af91c] CompositionsBase v0.1.2 [95dc2771] ComputePipeline v0.1.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [150eb455] CoordinateTransformations v0.6.4 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.4 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [3c3547ce] DiskArrays v0.4.13 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [429591f6] ExactPredicates v2.2.8 [460bff9d] ExceptionUnwrapping v0.1.11 [411431e0] Extents v0.1.6 [c87230d0] FFMPEG v0.4.2 [7a1cc6ca] FFTW v1.9.0 [5789e2e9] FileIO v1.17.0 ⌅ [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.0.1 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 ⌃ [28b8d3ca] GR v0.73.7 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.4.1 [e018b62d] GeoParams v0.7.4 [0ef565a4] Geodesy v1.1.0 [5c1252a2] GeometryBasics v0.5.9 [3700c31b] GeophysicalModelGenerator v0.7.14 [c27321d9] Glob v1.3.1 [a2bd30eb] Graphics v1.1.3 [3955a311] GridLayoutBase v0.11.1 [42e2da0e] Grisu v1.0.2 [cd3eb016] HTTP v1.10.17 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [7d512f48] InternedStrings v0.7.0 ⌅ [a98d9a8b] Interpolations v0.15.1 [d1acc4aa] IntervalArithmetic v0.22.36 [8197267c] IntervalSets v0.7.11 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.5.15 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [b835a17e] JpegTurbo v0.1.6 [5ab0869b] KernelDensity v0.6.9 [49dc5b4e] KernelDensitySJ v0.2.1 [8ac3fa9e] LRUCache v1.6.2 [2e889f3d] LaMEM v0.4.7 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.8 [8cdb02fc] LazyModules v0.3.1 [9c8b4983] LightXML v0.9.2 [4345ca2d] Loess v0.6.4 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [da04e1cc] MPI v0.20.22 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [ee78f7c6] Makie v0.24.2 [dbb5928d] MappedArrays v0.4.2 [0a4f8689] MathTeXEngine v0.6.5 [739be429] MbedTLS v1.1.9 [442fdcdd] Measures v0.3.2 [7269a6da] MeshIO v0.5.3 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [46d2c3a1] MuladdMacro v0.2.4 [85f8d34a] NCDatasets v0.14.8 [77ba4419] NaNMath v1.1.3 [b8a86587] NearestNeighbors v0.4.21 [f09324ee] Netpbm v1.1.1 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 [52e1d378] OpenEXR v0.3.3 [4d8831e6] OpenSSL v1.5.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [f57f5aa1] PNGFiles v0.4.4 [19eb6ba3] Packing v0.5.1 [5432bcbf] PaddedViews v0.5.12 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [eebad327] PkgVersion v0.3.3 [ccf2f8ad] PlotThemes v3.3.0 [995b91a9] PlotUtils v1.4.3 [91a5bcdd] Plots v1.40.15 [647866c9] PolygonOps v0.1.2 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [4b34888f] QOI v1.0.1 [1fd47b50] QuadGK v2.11.2 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [dc215faf] ReadVTK v0.2.4 [3cdcf5f2] RecipesBase v1.3.4 [01d81517] RecipesPipeline v0.6.12 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [f2b01f46] Roots v2.2.8 [5eaf0fd0] RoundingEmulator v0.2.1 [fdea26ae] SIMD v3.7.1 [7e506255] ScopedValues v1.3.0 [6c6a2e73] Scratch v1.3.0 [efcf1570] Setfield v1.1.2 [65257c39] ShaderAbstractions v0.5.0 [992d4aef] Showoff v1.0.3 [73760f76] SignedDistanceFields v0.4.0 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.4 [45858cf5] Sixel v0.1.5 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [860ef19b] StableRNGs v1.0.3 [cae243ae] StackViews v0.1.2 [aedffcd0] Static v1.2.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [731e570b] TiffImages v0.11.4 [3bb67fe8] TranscodingStreams v0.11.3 [981d1d27] TriplotBase v0.1.0 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [1cfade01] UnicodeFun v0.4.1 [967fb449] Unidecode v1.2.0 [1986cc42] Unitful v1.23.1 [45397f5d] UnitfulLatexify v1.7.0 [41fe7b60] Unzip v0.2.0 [4004b06d] VTKBase v1.0.1 [e3aaa7dc] WebP v0.1.3 ⌃ [ea906314] WhereTheWaterFlows v0.10.2 [efce3f68] WoodburyMatrices v1.0.0 [64499a7a] WriteVTK v1.21.2 ⌅ [8ce61222] Arrow_jll v10.0.1+0 [0b7ba130] Blosc_jll v1.21.7+0 [6e34b625] Bzip2_jll v1.0.9+0 [4e9b3aee] CRlibm_jll v1.0.1+0 [83423d85] Cairo_jll v1.18.5+0 [ee1fde0b] Dbus_jll v1.16.2+0 [5ae413db] EarCut_jll v2.2.4+0 [2702e6a9] EpollShim_jll v0.0.20230411+1 [2e619515] Expat_jll v2.6.5+0 ⌅ [b22a6f82] FFMPEG_jll v4.4.4+1 [f5851436] FFTW_jll v3.3.11+0 [a3f928ae] Fontconfig_jll v2.16.0+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 ⌅ [a7073274] GDAL_jll v301.900.0+0 [d604d12d] GEOS_jll v3.13.1+1 [0656b61e] GLFW_jll v3.4.0+2 ⌅ [d2c73de3] GR_jll v0.73.7+0 [b0724c58] GettextRuntime_jll v0.22.4+0 [59f7168a] Giflib_jll v5.2.3+0 [7746bdde] Glib_jll v2.84.3+0 [3b182d85] Graphite2_jll v1.3.15+0 ⌅ [0234f1f7] HDF5_jll v1.14.3+3 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [a51ab1cf] ICU_jll v76.2.0+0 [905a6f67] Imath_jll v3.1.11+0 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [aacddb02] JpegTurbo_jll v3.1.1+0 [b39eb1a6] Kerberos_krb5_jll v1.21.3+0 [c1c5ebd0] LAME_jll v3.100.2+0 ⌅ [88015f11] LERC_jll v3.0.0+1 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 ⌅ [15d6fa20] LaMEM_jll v2.1.4+0 [08be9ffa] LibPQ_jll v16.8.0+0 [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.0+0 ⌅ [89763e89] Libtiff_jll v4.5.1+1 [38a345b3] Libuuid_jll v2.41.0+0 [d3a379c0] LittleCMS_jll v2.16.0+0 [5ced341a] Lz4_jll v1.10.1+0 [856f044c] MKL_jll v2025.0.1+1 ⌅ [7cb0a576] MPICH_jll v4.1.2+1 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [c8ffd9c3] MbedTLS_jll v2.28.6+2 [9237b28f] MicrosoftMPI_jll v10.1.4+3 ⌅ [7243133f] NetCDF_jll v400.902.211+1 [e7412a2a] Ogg_jll v1.3.5+1 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [6cdc7f73] OpenBLASConsistentFPCSR_jll v0.3.29+0 [18a262bb] OpenEXR_jll v3.2.4+0 [643b3616] OpenJpeg_jll v2.5.4+0 ⌅ [fe0851c0] OpenMPI_jll v4.1.8+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [91d4177d] Opus_jll v1.3.3+0 ⌅ [8fa3689e] PETSc_jll v3.19.6+0 ⌅ [58948b4f] PROJ_jll v901.300.0+1 [36c8627f] Pango_jll v1.56.3+0 ⌅ [30392449] Pixman_jll v0.44.2+0 ⌅ [c0090381] Qt6Base_jll v6.7.1+1 ⌅ [629bc702] Qt6Declarative_jll v6.7.1+2 ⌅ [ce943373] Qt6ShaderTools_jll v6.7.1+1 ⌃ [e99dba38] Qt6Wayland_jll v6.7.1+1 [f50d1b31] Rmath_jll v0.5.1+0 [aabda75e] SCALAPACK32_jll v2.2.1+1 [76ed43ae] SQLite_jll v3.48.0+0 ⌅ [e0b8ae26] Thrift_jll v0.16.0+0 [a44049a8] Vulkan_Loader_jll v1.3.243+0 [a2964d1f] Wayland_jll v1.23.1+1 ⌅ [02c8fc9c] XML2_jll v2.13.6+1 [ffd25f8a] XZ_jll v5.8.1+0 [f67eecfb] Xorg_libICE_jll v1.1.2+0 [c834827a] Xorg_libSM_jll v1.2.6+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [935fb764] Xorg_libXcursor_jll v1.2.4+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [d091e8ba] Xorg_libXfixes_jll v6.0.1+0 [a51aa0fd] Xorg_libXi_jll v1.8.3+0 [d1454406] Xorg_libXinerama_jll v1.1.6+0 [ec84b674] Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [cc61e674] Xorg_libxkbfile_jll v1.1.3+0 [e920d4aa] Xorg_xcb_util_cursor_jll v0.1.5+0 [12413925] Xorg_xcb_util_image_jll v0.4.1+0 [2def613f] Xorg_xcb_util_jll v0.4.1+0 [975044d2] Xorg_xcb_util_keysyms_jll v0.4.1+0 [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.10+0 [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.2+0 [35661453] Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 ⌅ [28df3c45] boost_jll v1.76.0+1 [35ca27e7] eudev_jll v3.2.14+0 [214eeab7] fzf_jll v0.61.1+0 [9a68df92] isoband_jll v0.2.3+0 [477f73a3] libaec_jll v1.1.3+0 [a4ae2306] libaom_jll v3.11.0+0 ⌅ [0ac62f75] libass_jll v0.15.2+0 [1183f4f0] libdecor_jll v0.2.2+0 [2db6ffa8] libevdev_jll v1.13.4+0 [f638f0a6] libfdk_aac_jll v2.0.3+0 ⌃ [06c338fa] libgeotiff_jll v100.701.300+0 [36db933b] libinput_jll v1.28.1+0 [b53b4c65] libpng_jll v1.6.49+0 [075b6546] libsixel_jll v1.10.5+0 [f27f6e37] libvorbis_jll v1.3.7+2 ⌃ [c5f90fcd] libwebp_jll v1.4.0+0 [337d8026] libzip_jll v1.11.3+0 [009596ad] mtdev_jll v1.1.7+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [fe1e1685] snappy_jll v1.2.3+0 ⌅ [1270edf5] x264_jll v2021.5.5+0 ⌅ [dfaa095f] x265_jll v3.5.0+0 [d8fb68d0] xkbcommon_jll v1.9.2+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... Info Given LaMEM was explicitly requested, output will be shown live  WARNING: Method definition piece(ReadVTK.VTKFile) in module ReadVTK at /home/pkgeval/.julia/packages/ReadVTK/tf0t4/src/ReadVTK.jl:184 overwritten in module IO_functions at /home/pkgeval/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:279. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 23352.1 ms ? LaMEM WARNING: Method definition piece(ReadVTK.VTKFile) in module ReadVTK at /home/pkgeval/.julia/packages/ReadVTK/tf0t4/src/ReadVTK.jl:184 overwritten in module IO_functions at /home/pkgeval/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:279. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: Method definition piece(ReadVTK.VTKFile) in module ReadVTK at /home/pkgeval/.julia/packages/ReadVTK/tf0t4/src/ReadVTK.jl:184 overwritten in module IO_functions at /home/pkgeval/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:279. Precompiling packages... 8726.1 ms ✓ SCALAPACK32_jll 5326.2 ms ✓ PETSc_jll 5380.9 ms ✓ LaMEM_jll 3 dependencies successfully precompiled in 20 seconds. 35 already precompiled. Precompiling packages... 10988.7 ms ✓ MPI 1 dependency successfully precompiled in 11 seconds. 40 already precompiled. Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 2 Time step : 1. [Myr] Minimum time step : 0.2 [Myr] Maximum time step : 10. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 16, 16] Number of cells : 4096 Number of faces : 13056 Maximum cell aspect ratio : 2.00000 Lower coordinate bounds [bx, by, bz] : [-2., -1., -1.] Upper coordinate bounds [ex, ey, ez] : [2., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- sphere (dens) : rho = 3200. [kg/m^3] (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.030279 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress tensor @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Preconditioner type : coupled Galerkin geometric multigrid Global coarse grid [nx,ny,nz] : [8, 8, 8] Local coarse grid [nx,ny,nz] : [8, 8, 8] Number of multigrid levels : 2 -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : multigrid Multigrid smoother levels KSP : chebyshev Multigrid smoother levels PC : sor Number of smoothening steps : 10 Coarse level KSP : preonly Coarse level PC : lu Coarse level solver package : (null) -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 3.656395025301e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 5 1 SNES Function norm 9.765816215863e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.591264 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.291310889682e-05 |Div|_2 = 2.886140529488e-04 Momentum: |mRes|_2 = 9.761550506474e-03 -------------------------------------------------------------------------- Saving output ... done (0.00381109 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 1.00000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 2.685113961409e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 15 1 SNES Function norm 4.489500644001e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.686548 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.406409583179e-06 |Div|_2 = 5.437966746000e-06 Momentum: |mRes|_2 = 4.489497350596e-03 -------------------------------------------------------------------------- Actual time step : 1.10000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.1773e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00343302 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 1.49023 (sec) -------------------------------------------------------------------------- Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 3 Time step : 1. [Myr] Minimum time step : 1e-05 [Myr] Maximum time step : 10. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 16, 16] Number of cells : 4096 Number of faces : 13056 Maximum cell aspect ratio : 2.00000 Lower coordinate bounds [bx, by, bz] : [-2., -1., -1.] Upper coordinate bounds [ex, ey, ez] : [2., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- sphere (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of velocity boxes : 1 Velocity box # : 0 Box center : 0., 0., 0. [km] Box width : 1., 1., 1. [km] X-velocity : 1. [cm/yr] Top boundary temperature : 0. [C] Bottom boundary temperature : 20. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.030816 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Preconditioner type : coupled Galerkin geometric multigrid Global coarse grid [nx,ny,nz] : [8, 8, 8] Local coarse grid [nx,ny,nz] : [8, 8, 8] Number of multigrid levels : 2 -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : multigrid Multigrid smoother levels KSP : chebyshev Multigrid smoother levels PC : sor Number of smoothening steps : 10 Coarse level KSP : preonly Coarse level PC : lu Coarse level solver package : (null) -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 3.647420796124e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 7.297937424597e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.648847 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.461331555372e-06 |Div|_2 = 2.127815511859e-04 Momentum: |mRes|_2 = 7.294834793524e-03 -------------------------------------------------------------------------- Saving output ... done (0.00318994 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 1.00000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 5.382901817483e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 10 1 SNES Function norm 3.188552971360e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.601302 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.448585401899e-05 |Div|_2 = 1.340409029960e-03 Momentum: |mRes|_2 = 3.185734308993e-02 -------------------------------------------------------------------------- Actual time step : 0.01250 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 4692 markers and merged 24 markers in 1.6609e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00281341 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.01250000 [Myr] Tentative time step : 0.01250000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 3.188552971358e-02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 11 1 SNES Function norm 1.891353888714e-07 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.626052 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.163910967605e-09 |Div|_2 = 1.007415909660e-08 Momentum: |mRes|_2 = 1.888669019231e-07 -------------------------------------------------------------------------- Actual time step : 0.01250 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 8386 markers and merged 136 markers in 2.2880e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00271759 sec) -------------------------------------------------------------------------- ================================= STEP 3 ================================= -------------------------------------------------------------------------- Current time : 0.02500000 [Myr] Tentative time step : 0.01250000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.891353882404e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 13 1 SNES Function norm 3.806690487543e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.626298 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.732544348338e-15 |Div|_2 = 6.229370514023e-14 Momentum: |mRes|_2 = 3.806180757958e-12 -------------------------------------------------------------------------- Actual time step : 0.01250 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 9921 markers and merged 252 markers in 2.9868e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00297955 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 3.00033 (sec) -------------------------------------------------------------------------- Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 100000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 30 Time step : 0.01 [Myr] Minimum time step : 1e-05 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 5 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [64, 1, 64] Number of cells : 4096 Number of faces : 16512 Maximum cell aspect ratio : 1.28000 Lower coordinate bounds [bx, by, bz] : [-500., -10., -1000.] Upper coordinate bounds [ex, ey, ez] : [500., 10., 50.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- Air (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+22 [Pa*s] Bd = 5e-23 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1e+06 [J/kg/K] k = 100. [W/m/k] Phase ID : 1 -- OCrust (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+24 [Pa*s] Bd = 5e-25 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 2 -- Omantle (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 3 -- Umantle (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 4 -- Plume (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 5 -- Lmantle (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+21 [Pa*s] Bd = 5e-22 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 6 -- Plume2 (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 7 -- Umantle2 (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] -------------------------------------------------------------------------- Phase Transition laws: -------------------------------------------------------------------------- Phase Transition [0] : Constant Parameter : T Transition Value : 1200.000 Phase Above : 3 Phase Below : 2 Direction : BothWays Phase Transition [1] : Constant Parameter : Depth Transition Value : -400.000 Phase Above : 6 Phase Below : 4 Direction : BelowToAbove Reset Parameter : APS Phase Transition [2] : Clapeyron Transition law : Mantle_Transition_660km # Equations : 1 [ P = P0 + gamma*(T-T0) ] eq[0] : gamma = -2.50e+00 [MPa/C], P0 = 2.30e+10 [Pa], T0 = 1667.0 [deg C] Phase Above : 5 Phase Below : 3 Direction : BothWays Phase Transition [3] : Box Box Bounds : [200.0; 400.0; -100.0; 100.0; -1000.0; -500.0] [km] Box Vicinity : Use all particles to check inside/outside Linear Temp; bot T : 1300.0 [C] Linear Temp; top T : 20.0 [C] Phase Outside : 3 Phase Inside : 7 Direction : BothWays Reset Parameter : APS Adjusting density values due to phase transitions: -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 1 0 Open top boundary @ Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.0322417 sec) -------------------------------------------------------------------------- Output parameters: Output file name : Plume_PhaseTransitions_new Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- Initializing pressure with lithostatic pressure ... done (0.00166074 sec) -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 1.985087139977e+04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.594719909526e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.232903 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.736320446684e-03 |Div|_2 = 6.379041312826e-02 Momentum: |mRes|_2 = 1.672770938997e-02 -------------------------------------------------------------------------- Saving output ... done (0.00442487 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.01000000 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0247741 sec) -------------------------------------------------------------------------- 0 SNES Function norm 8.903947944260e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.024649811614e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.142539 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.935922950757e-06 |Div|_2 = 6.296964037381e-05 Momentum: |mRes|_2 = 6.024320723283e-03 -------------------------------------------------------------------------- Actual time step : 0.01100 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 441 markers and merged 0 markers in 1.2648e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00411338 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.01100000 [Myr] Tentative time step : 0.01100000 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0235147 sec) -------------------------------------------------------------------------- 0 SNES Function norm 8.034506122548e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.042794808280e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.138141 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.100791055896e-06 |Div|_2 = 2.663022244943e-05 Momentum: |mRes|_2 = 3.042678273585e-03 -------------------------------------------------------------------------- Actual time step : 0.01210 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1089 markers and merged 0 markers in 1.2607e-02 s -------------------------------------------------------------------------- ================================= STEP 3 ================================= -------------------------------------------------------------------------- Current time : 0.02310000 [Myr] Tentative time step : 0.01210000 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0244799 sec) -------------------------------------------------------------------------- 0 SNES Function norm 5.318612913611e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.512638742054e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.130931 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.382602357380e-06 |Div|_2 = 8.871198692501e-06 Momentum: |mRes|_2 = 4.512630022295e-03 -------------------------------------------------------------------------- Actual time step : 0.01271 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1648 markers and merged 0 markers in 1.4783e-02 s -------------------------------------------------------------------------- ================================= STEP 4 ================================= -------------------------------------------------------------------------- Current time : 0.03580813 [Myr] Tentative time step : 0.01270813 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.029882 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.935573222169e+04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.347072227143e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.142016 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.247047888856e-06 |Div|_2 = 7.447201618764e-06 Momentum: |mRes|_2 = 2.347072108994e-02 -------------------------------------------------------------------------- Actual time step : 0.01317 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2283 markers and merged 0 markers in 1.5487e-02 s -------------------------------------------------------------------------- ================================= STEP 5 ================================= -------------------------------------------------------------------------- Current time : 0.04898011 [Myr] Tentative time step : 0.01317198 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0290352 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.589238590905e+04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.013070382147e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.153654 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.805947853928e-06 |Div|_2 = 3.560205426322e-06 Momentum: |mRes|_2 = 1.013070319589e-02 -------------------------------------------------------------------------- Actual time step : 0.01348 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2457 markers and merged 3 markers in 1.5531e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00368768 sec) -------------------------------------------------------------------------- ================================= STEP 6 ================================= -------------------------------------------------------------------------- Current time : 0.06246502 [Myr] Tentative time step : 0.01348490 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0260027 sec) -------------------------------------------------------------------------- 0 SNES Function norm 7.105193382543e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.154888385840e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.143514 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.625893629040e-06 |Div|_2 = 7.876091187835e-06 Momentum: |mRes|_2 = 1.154888117274e-02 -------------------------------------------------------------------------- Actual time step : 0.01377 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2718 markers and merged 21 markers in 1.6737e-02 s -------------------------------------------------------------------------- ================================= STEP 7 ================================= -------------------------------------------------------------------------- Current time : 0.07623411 [Myr] Tentative time step : 0.01376910 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0273535 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.042373659728e+04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.510094877904e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.137391 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.794971457089e-06 |Div|_2 = 6.312594508142e-06 Momentum: |mRes|_2 = 1.510094745962e-02 -------------------------------------------------------------------------- Actual time step : 0.01399 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3179 markers and merged 33 markers in 1.8824e-02 s -------------------------------------------------------------------------- ================================= STEP 8 ================================= -------------------------------------------------------------------------- Current time : 0.09022767 [Myr] Tentative time step : 0.01399356 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0274254 sec) -------------------------------------------------------------------------- 0 SNES Function norm 2.871444769587e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.658430341970e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.138713 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.403254490275e-06 |Div|_2 = 5.498127413823e-06 Momentum: |mRes|_2 = 1.658421228085e-03 -------------------------------------------------------------------------- Actual time step : 0.01398 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3119 markers and merged 57 markers in 1.8153e-02 s -------------------------------------------------------------------------- ================================= STEP 9 ================================= -------------------------------------------------------------------------- Current time : 0.10421032 [Myr] Tentative time step : 0.01398265 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.028722 sec) -------------------------------------------------------------------------- 0 SNES Function norm 4.449583974129e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.322063249770e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.1379 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.449661887811e-06 |Div|_2 = 5.875773877495e-06 Momentum: |mRes|_2 = 5.322060006223e-03 -------------------------------------------------------------------------- Actual time step : 0.01428 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3466 markers and merged 90 markers in 2.0993e-02 s -------------------------------------------------------------------------- ================================ STEP 10 ================================= -------------------------------------------------------------------------- Current time : 0.11849403 [Myr] Tentative time step : 0.01428371 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0306511 sec) -------------------------------------------------------------------------- 0 SNES Function norm 4.706865316454e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.788517436845e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.139264 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.971033394610e-06 |Div|_2 = 3.839433186097e-06 Momentum: |mRes|_2 = 2.788514793639e-03 -------------------------------------------------------------------------- Actual time step : 0.01439 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3661 markers and merged 117 markers in 2.1148e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00410541 sec) -------------------------------------------------------------------------- ================================ STEP 11 ================================= -------------------------------------------------------------------------- Current time : 0.13288211 [Myr] Tentative time step : 0.01438807 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0294497 sec) -------------------------------------------------------------------------- 0 SNES Function norm 8.991485040991e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.694136165734e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.137848 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.383957079883e-06 |Div|_2 = 5.825431414762e-06 Momentum: |mRes|_2 = 8.694134214094e-03 -------------------------------------------------------------------------- Actual time step : 0.01458 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3219 markers and merged 150 markers in 2.2041e-02 s -------------------------------------------------------------------------- ================================ STEP 12 ================================= -------------------------------------------------------------------------- Current time : 0.14746103 [Myr] Tentative time step : 0.01457892 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0304756 sec) -------------------------------------------------------------------------- 0 SNES Function norm 5.473879258981e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.560793671473e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.134772 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.258375541324e-06 |Div|_2 = 2.992576486504e-06 Momentum: |mRes|_2 = 3.560792413957e-03 -------------------------------------------------------------------------- Actual time step : 0.01463 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3311 markers and merged 161 markers in 2.3695e-02 s -------------------------------------------------------------------------- ================================ STEP 13 ================================= -------------------------------------------------------------------------- Current time : 0.16209081 [Myr] Tentative time step : 0.01462979 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0321311 sec) -------------------------------------------------------------------------- 0 SNES Function norm 4.275685042272e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.103768241593e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.146283 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.613569589706e-06 |Div|_2 = 3.362504229368e-06 Momentum: |mRes|_2 = 5.103767133937e-03 -------------------------------------------------------------------------- Actual time step : 0.01468 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3513 markers and merged 249 markers in 2.4396e-02 s -------------------------------------------------------------------------- ================================ STEP 14 ================================= -------------------------------------------------------------------------- Current time : 0.17677097 [Myr] Tentative time step : 0.01468015 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0360529 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.350290833178e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.726032134112e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.136096 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.747924524954e-06 |Div|_2 = 6.606745373525e-06 Momentum: |mRes|_2 = 1.726019489723e-03 -------------------------------------------------------------------------- Actual time step : 0.01480 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3237 markers and merged 241 markers in 2.6007e-02 s -------------------------------------------------------------------------- ================================ STEP 15 ================================= -------------------------------------------------------------------------- Current time : 0.19157476 [Myr] Tentative time step : 0.01480379 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0364494 sec) -------------------------------------------------------------------------- 0 SNES Function norm 2.674533097998e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.036490753468e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.155408 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.276829055403e-06 |Div|_2 = 5.026127715309e-06 Momentum: |mRes|_2 = 3.036486593736e-03 -------------------------------------------------------------------------- Actual time step : 0.01474 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3166 markers and merged 301 markers in 2.7020e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00363758 sec) -------------------------------------------------------------------------- ================================ STEP 16 ================================= -------------------------------------------------------------------------- Current time : 0.20631027 [Myr] Tentative time step : 0.01473551 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0310361 sec) -------------------------------------------------------------------------- 0 SNES Function norm 3.214195749760e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.255579919968e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.135073 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 7.215428179386e-07 |Div|_2 = 1.542132189085e-06 Momentum: |mRes|_2 = 1.255578972927e-03 -------------------------------------------------------------------------- Actual time step : 0.01494 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2829 markers and merged 348 markers in 2.7528e-02 s -------------------------------------------------------------------------- ================================ STEP 17 ================================= -------------------------------------------------------------------------- Current time : 0.22125036 [Myr] Tentative time step : 0.01494009 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0382542 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.415360965464e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.397087471237e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.14746 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.282432859018e-06 |Div|_2 = 2.980539196763e-06 Momentum: |mRes|_2 = 1.397084291900e-03 -------------------------------------------------------------------------- Actual time step : 0.01505 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3076 markers and merged 366 markers in 2.9128e-02 s -------------------------------------------------------------------------- ================================ STEP 18 ================================= -------------------------------------------------------------------------- Current time : 0.23629778 [Myr] Tentative time step : 0.01504742 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0379272 sec) -------------------------------------------------------------------------- 0 SNES Function norm 3.271567359873e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.069485309642e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.138907 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.690801147980e-06 |Div|_2 = 4.153467007522e-06 Momentum: |mRes|_2 = 3.069482499514e-03 -------------------------------------------------------------------------- Actual time step : 0.01518 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2831 markers and merged 351 markers in 2.6552e-02 s -------------------------------------------------------------------------- ================================ STEP 19 ================================= -------------------------------------------------------------------------- Current time : 0.25147556 [Myr] Tentative time step : 0.01517778 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.041414 sec) -------------------------------------------------------------------------- 0 SNES Function norm 8.407677792888e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.478870555625e-04 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.136609 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.034064185168e-06 |Div|_2 = 1.427767384948e-06 Momentum: |mRes|_2 = 3.478841256917e-04 -------------------------------------------------------------------------- Actual time step : 0.01517 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2958 markers and merged 373 markers in 4.3517e-02 s -------------------------------------------------------------------------- ================================ STEP 20 ================================= -------------------------------------------------------------------------- Current time : 0.26665036 [Myr] Tentative time step : 0.01517480 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0393178 sec) -------------------------------------------------------------------------- 0 SNES Function norm 3.454633636616e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.597346615330e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.139784 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.757287793226e-06 |Div|_2 = 4.633531387496e-06 Momentum: |mRes|_2 = 4.597344280328e-03 -------------------------------------------------------------------------- Actual time step : 0.01529 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2615 markers and merged 348 markers in 2.9285e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00495349 sec) -------------------------------------------------------------------------- ================================ STEP 21 ================================= -------------------------------------------------------------------------- Current time : 0.28194393 [Myr] Tentative time step : 0.01529357 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0376562 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.662243615071e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.457572792318e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.136359 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.549740517276e-06 |Div|_2 = 2.356606806332e-06 Momentum: |mRes|_2 = 1.457570887233e-03 -------------------------------------------------------------------------- Actual time step : 0.01530 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2223 markers and merged 464 markers in 3.1194e-02 s -------------------------------------------------------------------------- ================================ STEP 22 ================================= -------------------------------------------------------------------------- Current time : 0.29723979 [Myr] Tentative time step : 0.01529587 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0383616 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.666098628745e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.181579776420e-04 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.137435 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.105071822966e-07 |Div|_2 = 4.345251602430e-07 Momentum: |mRes|_2 = 2.181575448998e-04 -------------------------------------------------------------------------- Actual time step : 0.01536 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2358 markers and merged 388 markers in 2.9216e-02 s -------------------------------------------------------------------------- ================================ STEP 23 ================================= -------------------------------------------------------------------------- Current time : 0.31259987 [Myr] Tentative time step : 0.01536008 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0421302 sec) -------------------------------------------------------------------------- 0 SNES Function norm 6.520633752479e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.585323132561e-04 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.137732 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.074607750498e-07 |Div|_2 = 1.241583485338e-06 Momentum: |mRes|_2 = 3.585301634720e-04 -------------------------------------------------------------------------- Actual time step : 0.01533 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2052 markers and merged 489 markers in 3.1459e-02 s -------------------------------------------------------------------------- ================================ STEP 24 ================================= -------------------------------------------------------------------------- Current time : 0.32792814 [Myr] Tentative time step : 0.01532827 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0417701 sec) -------------------------------------------------------------------------- 0 SNES Function norm 7.544791942376e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.645518857154e-04 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.156223 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.963381580539e-06 |Div|_2 = 3.578799441957e-06 Momentum: |mRes|_2 = 6.645422492230e-04 -------------------------------------------------------------------------- Actual time step : 0.01533 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1961 markers and merged 581 markers in 3.0983e-02 s -------------------------------------------------------------------------- ================================ STEP 25 ================================= -------------------------------------------------------------------------- Current time : 0.34326050 [Myr] Tentative time step : 0.01533236 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0344756 sec) -------------------------------------------------------------------------- 0 SNES Function norm 2.428135768392e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.940813617477e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.130612 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.323266839596e-06 |Div|_2 = 2.195414288975e-06 Momentum: |mRes|_2 = 1.940812375769e-03 -------------------------------------------------------------------------- Actual time step : 0.01535 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2019 markers and merged 548 markers in 3.0035e-02 s -------------------------------------------------------------------------- Saving output ... done (0.0047835 sec) -------------------------------------------------------------------------- ================================ STEP 26 ================================= -------------------------------------------------------------------------- Current time : 0.35861463 [Myr] Tentative time step : 0.01535414 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0448644 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.789866730496e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.615523047067e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.139055 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.855295772624e-06 |Div|_2 = 3.281914795005e-06 Momentum: |mRes|_2 = 1.615519713479e-03 -------------------------------------------------------------------------- Actual time step : 0.01538 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1918 markers and merged 626 markers in 3.2210e-02 s -------------------------------------------------------------------------- ================================ STEP 27 ================================= -------------------------------------------------------------------------- Current time : 0.37399938 [Myr] Tentative time step : 0.01538475 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0404117 sec) -------------------------------------------------------------------------- 0 SNES Function norm 5.889560968213e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.610205639529e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.134537 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.735301883940e-07 |Div|_2 = 1.052907877585e-06 Momentum: |mRes|_2 = 1.610205295283e-03 -------------------------------------------------------------------------- Actual time step : 0.01541 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1756 markers and merged 594 markers in 3.4569e-02 s -------------------------------------------------------------------------- ================================ STEP 28 ================================= -------------------------------------------------------------------------- Current time : 0.38940579 [Myr] Tentative time step : 0.01540641 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0462502 sec) -------------------------------------------------------------------------- 0 SNES Function norm 6.172228468350e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.191147607294e-04 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.138633 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.224928623258e-06 |Div|_2 = 5.311699400284e-06 Momentum: |mRes|_2 = 5.190875847645e-04 -------------------------------------------------------------------------- Actual time step : 0.01550 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1699 markers and merged 628 markers in 3.0973e-02 s -------------------------------------------------------------------------- ================================ STEP 29 ================================= -------------------------------------------------------------------------- Current time : 0.40491046 [Myr] Tentative time step : 0.01550467 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0376195 sec) -------------------------------------------------------------------------- 0 SNES Function norm 2.295216675739e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.561757840034e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.138496 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.107123301842e-06 |Div|_2 = 4.128857669323e-06 Momentum: |mRes|_2 = 1.561752382243e-03 -------------------------------------------------------------------------- Actual time step : 0.01561 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1661 markers and merged 673 markers in 3.5856e-02 s -------------------------------------------------------------------------- ================================ STEP 30 ================================= -------------------------------------------------------------------------- Current time : 0.42052352 [Myr] Tentative time step : 0.01561306 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0422321 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.803452452713e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.966698890739e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.133399 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.558964615428e-06 |Div|_2 = 3.788307440217e-06 Momentum: |mRes|_2 = 1.966695242167e-03 -------------------------------------------------------------------------- Actual time step : 0.01574 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1519 markers and merged 607 markers in 3.3047e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00629126 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 10.7782 (sec) -------------------------------------------------------------------------- pwd() = "/home/pkgeval/.julia/packages/LaMEM/M6C0P/test" readdir() = ["CreateMarkers_Subduction_Linear_FreeSlip_parallel.jl", "Rhyolite.in", "input_files", "markers", "mesh_refinement_test.jl", "read_logfile.jl", "read_timestep.jl", "runLaMEM.jl", "run_lamem_save_grid_test.jl", "runtests.jl", "test_GeoParams_integration.jl", "test_compression.jl", "test_erosion.jl", "test_examples.jl", "test_julia_setup_phase_diagrams.jl", "test_julia_setups.jl", "test_sedimentation.jl"] Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 100000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 4 Time step : 0.04 [Myr] Minimum time step : 0.004 [Myr] Maximum time step : 0.2 [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 1, 16] Number of cells : 256 Number of faces : 1056 Maximum cell aspect ratio : 6.25000 Lower coordinate bounds [bx, by, bz] : [-100., -1., -100.] Upper coordinate bounds [ex, ey, ez] : [100., 1., 0.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- heter - Employing phase diagram: /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/Rhyolite (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] Phase ID : 0 -- matrix - Employing phase diagram: /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/Rhyolite (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Top boundary temperature : 0. [C] Bottom boundary temperature : 989.583 [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.00222186 sec) -------------------------------------------------------------------------- Phase Diagrams: Diagrams employed for phases : 0: P range=[0.2-20.2] kbar, T range = [386.4-2086.4] K 1: -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ Melt fraction @ Fluid density @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 3.934530286730e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.581262562749e+02 1 PICARD ||F||/||F0||=4.018936e-02 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 2 SNES Function norm 1.117627025004e+01 2 MMFD ||F||/||F0||=2.840560e-03 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 3 SNES Function norm 1.432330149671e-01 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 3 SNES solution time : 0.0176889 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.002321873040e-09 |Div|_2 = 5.644441176775e-08 Momentum: |mRes|_2 = 1.432330149671e-01 -------------------------------------------------------------------------- Saving output ... done (0.00102126 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.04000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 3.050235816760e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.039676666126e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.00607125 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.069414583551e-18 |Div|_2 = 3.162302608719e-17 Momentum: |mRes|_2 = 3.039676666126e-03 -------------------------------------------------------------------------- Actual time step : 0.04400 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.3697e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000953301 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.04400000 [Myr] Tentative time step : 0.04400000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 3.040264438959e-03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 6.434728602950e-05 1 PICARD ||F||/||F0||=2.116503e-02 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 2 SNES Function norm 1.391731242115e-06 2 MMFD ||F||/||F0||=4.577665e-04 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 3 SNES Function norm 3.775960634440e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 3 SNES solution time : 0.0182062 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 7.030373462211e-20 |Div|_2 = 2.243793518119e-19 Momentum: |mRes|_2 = 3.775960634440e-12 -------------------------------------------------------------------------- Actual time step : 0.04840 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 6.7008e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000956421 sec) -------------------------------------------------------------------------- ================================= STEP 3 ================================= -------------------------------------------------------------------------- Current time : 0.09240000 [Myr] Tentative time step : 0.04840000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 2.883181848925e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 7.210941128243e-07 1 PICARD ||F||/||F0||=2.501036e-02 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 2 SNES Function norm 1.472232176353e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00985382 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.343431206158e-15 |Div|_2 = 7.266627062028e-15 Momentum: |mRes|_2 = 1.472232176353e-08 -------------------------------------------------------------------------- Actual time step : 0.05324 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.6898e-04 s -------------------------------------------------------------------------- Saving output ... done (0.00096188 sec) -------------------------------------------------------------------------- ================================= STEP 4 ================================= -------------------------------------------------------------------------- Current time : 0.14564000 [Myr] Tentative time step : 0.05324000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 3.170864950966e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 7.927997956283e-07 1 PICARD ||F||/||F0||=2.500264e-02 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 2 SNES Function norm 1.618712375651e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00980338 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.477117569190e-15 |Div|_2 = 7.988983672080e-15 Momentum: |mRes|_2 = 1.618712375651e-08 -------------------------------------------------------------------------- Actual time step : 0.05856 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.6569e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000879361 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.116713 (sec) -------------------------------------------------------------------------- Saved file: Model3D.vts cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 2 Time step : 1. [Myr] Minimum time step : 0.2 [Myr] Maximum time step : 10. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 1, 16] Number of cells : 256 Number of faces : 1056 Maximum cell aspect ratio : 2.00000 Lower coordinate bounds [bx, by, bz] : [-2., -0.09375, -1.] Upper coordinate bounds [ex, ey, ez] : [2., 0.09375, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- sphere (dens) : rho = 3200. [kg/m^3] (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : geometric primitives Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise Background phase ID : 0 -------------------------------------------------------------------------- Reading geometric primitives ... done (0.000169349 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 9.118551990311e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.116028797339e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00742607 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.174184490476e-18 |Div|_2 = 5.984135402956e-18 Momentum: |mRes|_2 = 1.116028797323e-12 -------------------------------------------------------------------------- Saving output ... done (0.000983791 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 1.00000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.116028797339e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.979851535660e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00435815 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.877881017396e-30 |Div|_2 = 3.192494526470e-29 Momentum: |mRes|_2 = 4.979851535660e-14 -------------------------------------------------------------------------- Actual time step : 1.10000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.4280e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000844272 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0339812 (sec) -------------------------------------------------------------------------- Saved file: Model3D.vts cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 2 Time step : 1. [Myr] Minimum time step : 0.2 [Myr] Maximum time step : 10. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 1, 16] Number of cells : 256 Number of faces : 1056 Maximum cell aspect ratio : 2.00000 Lower coordinate bounds [bx, by, bz] : [-2., -0.09375, -1.] Upper coordinate bounds [ex, ey, ez] : [2., 0.09375, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- sphere (dens) : rho = 3200. [kg/m^3] (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : geometric primitives Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise Background phase ID : 0 -------------------------------------------------------------------------- Reading geometric primitives ... done (0.000568735 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 9.118551990311e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.116028797339e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00788733 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.174184490476e-18 |Div|_2 = 5.984135402956e-18 Momentum: |mRes|_2 = 1.116028797323e-12 -------------------------------------------------------------------------- Saving output ... done (0.000960961 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 1.00000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.116028797339e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.979851535660e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00403181 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.877881017396e-30 |Div|_2 = 3.192494526470e-29 Momentum: |mRes|_2 = 4.979851535660e-14 -------------------------------------------------------------------------- Actual time step : 1.10000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.6325e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000863171 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0348412 (sec) -------------------------------------------------------------------------- cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/input_files/FallingBlock_Multigrid.dat Adding PETSc option: -snes_type ksponly Adding PETSc option: -js_ksp_monitor Adding PETSc option: -crs_pc_type bjacobi Finished parsing input file -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [ ] Maximum number of steps : 1 Time step : 10. [ ] Minimum time step : 1e-05 [ ] Maximum time step : 100. [ ] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.5 Output time step : 0.2 [ ] Output every [n] steps : 1 Output [n] initial steps : 1 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [32, 32, 32] Number of cells : 32768 Number of faces : 101376 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [0., 0., 0.] Upper coordinate bounds [ex, ey, ez] : [1., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 (dens) : rho = 1. [ ] (diff) : eta = 1. [ ] Bd = 0.5 [ ] Phase ID : 1 (dens) : rho = 2. [ ] (diff) : eta = 100. [ ] Bd = 0.005 [ ] Phase ID : 2 (dens) : rho = 2. [ ] (diff) : eta = 1000. [ ] Bd = 0.0005 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -1.] [ ] Surface stabilization (FSSA) : 1. Use lithostatic pressure for creep @ Minimum viscosity : 0.001 [ ] Maximum viscosity : 1e+12 [ ] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : geometric primitives Velocity interpolation scheme : empirical STAGP (STAG + pressure points) Marker control type : pure AVD for all control volumes Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise Background phase ID : 0 Interpolation constant : 0.7 -------------------------------------------------------------------------- Reading geometric primitives ... done (0.0231483 sec) -------------------------------------------------------------------------- Output parameters: Output file name : FB_multigrid Write .pvd file : yes Phase @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Deviatoric stress second invariant @ Deviatoric strain rate tensor @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- AVD output parameters: Write .pvd file : yes AVD refinement factor : 3 -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Preconditioner type : coupled Galerkin geometric multigrid Global coarse grid [nx,ny,nz] : [4, 4, 4] Local coarse grid [nx,ny,nz] : [4, 4, 4] Number of multigrid levels : 4 -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : multigrid Multigrid smoother levels KSP : chebyshev Multigrid smoother levels PC : sor Number of smoothening steps : 10 Coarse level KSP : preonly Coarse level PC : bjacobi -------------------------------------------------------------------------- Saving output ... done (0.899452 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [ ] Tentative time step : 10.00000000 [ ] -------------------------------------------------------------------------- 0 SNES Function norm 1.832203177398e+02 0 PICARD ||F||/||F0||=1.000000e+00 Residual norms for js_ solve. 0 KSP Residual norm 2.121468833494e+01 1 KSP Residual norm 2.007312746141e+01 2 KSP Residual norm 1.436721786209e+01 3 KSP Residual norm 7.031413261028e+00 4 KSP Residual norm 2.361866279194e+00 5 KSP Residual norm 1.011785314253e+00 6 KSP Residual norm 4.700182839567e-01 7 KSP Residual norm 3.431392417306e-01 8 KSP Residual norm 1.759675422301e-01 9 KSP Residual norm 1.053716068647e-01 10 KSP Residual norm 9.342460424411e-02 11 KSP Residual norm 7.749792924243e-02 12 KSP Residual norm 5.192767141878e-02 13 KSP Residual norm 3.842800827033e-02 14 KSP Residual norm 1.589386132911e-02 15 KSP Residual norm 8.851034636242e-03 16 KSP Residual norm 4.554700539865e-03 17 KSP Residual norm 2.632601842348e-03 18 KSP Residual norm 1.311043982030e-03 19 KSP Residual norm 6.462411319589e-04 20 KSP Residual norm 3.583024905386e-04 21 KSP Residual norm 1.510300556884e-04 Linear js_ solve converged due to CONVERGED_RTOL iterations 21 1 SNES Function norm 1.371165827605e-02 -------------------------------------------------------------------------- SNES Convergence Reason : maximum iterations reached Number of iterations : 1 SNES solution time : 7.33266 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.351162529297e-05 |Div|_2 = 1.404433474462e-04 Momentum: |mRes|_2 = 1.371093900305e-02 -------------------------------------------------------------------------- Actual time step : 6.73129 [ ] -------------------------------------------------------------------------- Marker control [0]: (AVD YZED) injected 5 markers and deleted 0 markers in 1.3126e-03 s Marker control [0]: (AVD XZED) injected 7 markers and deleted 0 markers in 1.4053e-03 s Marker control [0]: (AVD XYED) injected 10 markers and deleted 0 markers in 1.8573e-03 s -------------------------------------------------------------------------- Saving output ... done (1.35826 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 11.6421 (sec) -------------------------------------------------------------------------- cores_compute = 4 Fatal error in internal_Init_thread: Other MPI error, error stack: internal_Init_thread(67)...........: MPI_Init_thread(argc=0x7ffc586979ac, argv=0x7ffc586979a0, required=1, provided=0x7ffc5869756c) failed MPII_Init_thread(234)..............: MPID_Init(67)......................: init_world(171)....................: channel initialization failed MPIDI_CH3_Init(84).................: MPID_nem_init(314).................: MPID_nem_tcp_init(175).............: MPID_nem_tcp_get_business_card(397): GetSockInterfaceAddr(370)..........: gethostbyname failed, LaMEM-primary-i2jB4IWw (errno 2) Falling Block test on 4 cores failed cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/input_files/FallingBlock_DirectSolver.dat Adding PETSc option: -snes_type ksponly Adding PETSc option: -js_ksp_monitor Finished parsing input file -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [ ] Maximum number of steps : 2 Time step : 10. [ ] Minimum time step : 1e-05 [ ] Maximum time step : 100. [ ] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.5 Output time step : 0.2 [ ] Output every [n] steps : 1000 Output [n] initial steps : 1 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 16, 16] Number of cells : 4096 Number of faces : 13056 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [0., 0., 0.] Upper coordinate bounds [ex, ey, ez] : [1., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 (dens) : rho = 1. [ ] (diff) : eta = 1. [ ] Bd = 0.5 [ ] Phase ID : 1 (dens) : rho = 2. [ ] (diff) : eta = 100. [ ] Bd = 0.005 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -1.] [ ] Surface stabilization (FSSA) : 1. Use lithostatic pressure for creep @ Minimum viscosity : 0.001 [ ] Maximum viscosity : 1e+12 [ ] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : geometric primitives Velocity interpolation scheme : empirical STAGP (STAG + pressure points) Marker control type : pure AVD for all control volumes Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise Background phase ID : 0 Interpolation constant : 0.7 -------------------------------------------------------------------------- Reading geometric primitives ... done (0.00412638 sec) -------------------------------------------------------------------------- Output parameters: Output file name : FB_direct Write .pvd file : yes Phase @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ -------------------------------------------------------------------------- AVD output parameters: Write .pvd file : yes AVD refinement factor : 3 -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+03 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- Saving output ... done (0.106473 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [ ] Tentative time step : 10.00000000 [ ] -------------------------------------------------------------------------- 0 SNES Function norm 7.310266752999e+01 0 PICARD ||F||/||F0||=1.000000e+00 Residual norms for js_ solve. 0 KSP Residual norm 2.133540043787e+01 1 KSP Residual norm 1.859427686320e-02 2 KSP Residual norm 2.899733401244e-05 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.649877042896e-04 -------------------------------------------------------------------------- SNES Convergence Reason : maximum iterations reached Number of iterations : 1 SNES solution time : 2.56024 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.056315829386e-06 |Div|_2 = 3.650679845667e-05 Momentum: |mRes|_2 = 1.608980926960e-04 -------------------------------------------------------------------------- Actual time step : 7.69851 [ ] -------------------------------------------------------------------------- Marker control [0]: (AVD CELL) injected 1 markers and deleted 0 markers in 3.0210e-04 s Marker control [0]: (AVD YZED) injected 6 markers and deleted 0 markers in 1.0514e-03 s Marker control [0]: (AVD XZED) injected 8 markers and deleted 0 markers in 1.6260e-03 s Marker control [0]: (AVD XYED) injected 2 markers and deleted 0 markers in 4.5906e-04 s -------------------------------------------------------------------------- Saving output ... done (0.138856 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 7.69851107 [ ] Tentative time step : 7.69851107 [ ] -------------------------------------------------------------------------- 0 SNES Function norm 1.307661178463e+02 0 PICARD ||F||/||F0||=1.000000e+00 Residual norms for js_ solve. 0 KSP Residual norm 1.189285812726e+00 1 KSP Residual norm 1.071718651319e-03 2 KSP Residual norm 2.121756434235e-06 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.789132168326e-04 -------------------------------------------------------------------------- SNES Convergence Reason : maximum iterations reached Number of iterations : 1 SNES solution time : 2.26818 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.594135843254e-08 |Div|_2 = 7.340971818893e-07 Momentum: |mRes|_2 = 5.789127513924e-04 -------------------------------------------------------------------------- Actual time step : 8.25319 [ ] -------------------------------------------------------------------------- Marker control [0]: (AVD YZED) injected 5 markers and deleted 0 markers in 8.6008e-04 s Marker control [0]: (AVD XZED) injected 4 markers and deleted 0 markers in 7.1527e-04 s Marker control [0]: (AVD XYED) injected 7 markers and deleted 0 markers in 1.2125e-03 s -------------------------------------------------------------------------- Saving output ... done (0.120724 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 5.60751 (sec) -------------------------------------------------------------------------- cores_compute = 2 Fatal error in internal_Init_thread: Other MPI error, error stack: internal_Init_thread(67)...........: MPI_Init_thread(argc=0x7ffc5a968b8c, argv=0x7ffc5a968b80, required=1, provided=0x7ffc5a96874c) failed MPII_Init_thread(234)..............: MPID_Init(67)......................: init_world(171)....................: channel initialization failed MPIDI_CH3_Init(84).................: MPID_nem_init(314).................: MPID_nem_tcp_init(175).............: MPID_nem_tcp_get_business_card(397): GetSockInterfaceAddr(370)..........: gethostbyname failed, LaMEM-primary-i2jB4IWw (errno 2) run LaMEM: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/runLaMEM.jl:4 Got exception outside of a @test failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/bin/mpiexec -n 2 /home/pkgeval/.julia/artifacts/cd461744844630cc33fbd2e7a8e795b56651d039/bin/LaMEM -ParamFile /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/input_files/FallingBlock_DirectSolver.dat '-nstep_max 5'`,["PYTHON=", "LANG=C.UTF-8", "VECLIB_MAXIMUM_THREADS=1", "PATH=/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin", "JULIA_LOAD_PATH=@:/tmp/jl_WqHooq", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_PKG_PRECOMPILE_AUTO=0", "OPENBLAS_MAIN_FREE=1", "DISPLAY=:1", "HOME=/home/pkgeval", "ZES_ENABLE_SYSMAN=1", "R_HOME=*", "JULIA_CPU_THREADS=1", "FONTCONFIG_PATH=/home/pkgeval/.julia/artifacts/2a6bae048c28452d329375cbb7479499115e45ad/etc/fonts", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "FONTCONFIG_FILE=/home/pkgeval/.julia/artifacts/2a6bae048c28452d329375cbb7479499115e45ad/etc/fonts/fonts.conf", "JULIA_NUM_THREADS=1", "OPENBLAS_NUM_THREADS=1", "CI=true", "JULIA_PKGEVAL=true", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/e83428c736a7117825caecd465ca39de72e835b8/lib:/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/lib:/home/pkgeval/.julia/artifacts/0a6a41be79ef85f32aa7d8529d4aebf9ef8ab030/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_real_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_complex_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_complex_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_real_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_real_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_complex_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_complex_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_real_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_real_Int64_deb/lib:/home/pkgeval/.julia/artifacts/cd461744844630cc33fbd2e7a8e795b56651d039/lib:/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib:/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/lib:/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib", "UCX_ERROR_SIGNALS=SIGILL,SIGBUS,SIGFPE", "OMP_NUM_THREADS=1", "PKGEVAL=true", "UCX_MEMTYPE_CACHE=no"]), ProcessExited(15)) [15] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run @ ./process.jl:514 [inlined] [4] run_lamem(ParamFile::String, cores::Int64, args::String; wait::Bool, deactivate_multithreads::Bool) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem.jl:0 [5] run_lamem(ParamFile::String, cores::Int64, args::String) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem.jl:50 [6] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runLaMEM.jl:7 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [8] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runLaMEM.jl:36 [inlined] [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [10] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [12] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:7 [inlined] [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [14] top-level scope @ none:6 [15] eval(m::Module, e::Any) @ Core ./boot.jl:489 [16] exec_options(opts::Base.JLOptions) @ Base ./client.jl:290 [17] _start() @ Base ./client.jl:557 Saved file: test_data.vts Saved file: test_data_phase.vts read LaMEM output: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/read_timestep.jl:5 Got exception outside of a @test SystemError: opening file "/home/pkgeval/.julia/packages/LaMEM/M6C0P/test/PlumeLithosphereInteraction_passive_tracers.pvd": No such file or directory Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base ./error.jl:186 [2] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Nothing, append::Nothing) @ Base ./iostream.jl:327 [3] open @ ./iostream.jl:306 [inlined] [4] open(f::Base.var"#363#364"{@Kwargs{}}, args::String; kwargs::@Kwargs{}) @ Base ./io.jl:418 [5] open @ ./io.jl:417 [inlined] [6] #readlines#361 @ ./io.jl:713 [inlined] [7] readlines @ ./io.jl:712 [inlined] [8] readPVD(FileName::String) @ LaMEM.IO_functions ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:383 [9] read_LaMEM_simulation(FileName::String, DirName::String; phase::Bool, surf::Bool, passive_tracers::Bool) @ LaMEM.IO_functions ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:593 [10] read_LaMEM_simulation @ ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:581 [inlined] [11] read_LaMEM_timestep(FileName::String, TimeStep::Int64, DirName::String; fields::Nothing, phase::Bool, surf::Bool, passive_tracers::Bool, last::Bool) @ LaMEM.IO_functions ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:550 [12] read_LaMEM_timestep @ ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:548 [inlined] [13] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/read_timestep.jl:8 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [15] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/read_timestep.jl:51 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:8 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:290 [24] _start() @ Base ./client.jl:557 No partitioning file required for 1 core model setup run lamem mode save grid test: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/run_lamem_save_grid_test.jl:3 Got exception outside of a @test MethodError: no method matching length(::Nothing) The function `length` exists, but no method is defined for this combination of argument types. Closest candidates are: length(!Matched::TranscodingStreams.Memory) @ TranscodingStreams ~/.julia/packages/TranscodingStreams/O3BYF/src/memory.jl:14 length(!Matched::Compiler.DFSTree) @ Base ../usr/share/julia/Compiler/src/ssair/domtree.jl:121 length(!Matched::Base.Iterators.Flatten{Tuple{}}) @ Base iterators.jl:1240 ... Stacktrace: [1] run_lamem_save_grid(ParamFile::String, cores::Int64; verbose::Bool, directory::String) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:92 [2] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/run_lamem_save_grid_test.jl:5 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [4] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/run_lamem_save_grid_test.jl:11 [inlined] [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [6] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [8] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:9 [inlined] [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [10] top-level scope @ none:6 [11] eval(m::Module, e::Any) @ Core ./boot.jl:489 [12] exec_options(opts::Base.JLOptions) @ Base ./client.jl:290 [13] _start() @ Base ./client.jl:557 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 1000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 2 Time step : 1. [Myr] Minimum time step : 0.2 [Myr] Maximum time step : 10. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [24, 24, 24] Number of cells : 13824 Number of faces : 43200 Maximum cell aspect ratio : 2.00000 Lower coordinate bounds [bx, by, bz] : [-1., -1., -1.] Upper coordinate bounds [ex, ey, ez] : [1., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- sphere (dens) : rho = 3200. [kg/m^3] (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.104813 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Preconditioner type : coupled Galerkin geometric multigrid Global coarse grid [nx,ny,nz] : [12, 12, 12] Local coarse grid [nx,ny,nz] : [12, 12, 12] Number of multigrid levels : 2 -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : multigrid Multigrid smoother levels KSP : chebyshev Multigrid smoother levels PC : sor Number of smoothening steps : 10 Coarse level KSP : preonly Coarse level PC : lu Coarse level solver package : (null) -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 3.403291317974e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 6 1 SNES Function norm 1.464986509563e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 21.3284 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.270115706137e-06 |Div|_2 = 6.060118300339e-05 Momentum: |mRes|_2 = 1.463732547230e-03 -------------------------------------------------------------------------- Saving output ... done (0.00807723 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 1.00000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 4.788630241324e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 16 1 SNES Function norm 3.498272686734e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 21.1354 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.403141994493e-05 |Div|_2 = 9.116365292802e-05 Momentum: |mRes|_2 = 3.497084639973e-03 -------------------------------------------------------------------------- Actual time step : 1.10000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.3888e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00685299 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 43.2793 (sec) -------------------------------------------------------------------------- | FineGrid | Cores | Nodes | CoarseGrid | CoaCores | Levels | SNES | KSP | TotalTime | CoarseTime | MemNode_Gb | Filename | | --------------- | ----- | ----- | ------------ | -------- | ------ | ---- | --- | --------- | ---------- | ---------- | -------------------------------- | | [512, 256, 256] | 512 | - | [32, 16, 16] | 512 | 5 | 1 | 72 | 26.26 | 9.9174 | - | input_files/128_cores_104812.txt | Saved file: Model3D.vts filesize compression: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/test_compression.jl:6 Got exception outside of a @test MethodError: no method matching length(::Nothing) The function `length` exists, but no method is defined for this combination of argument types. Closest candidates are: length(!Matched::TranscodingStreams.Memory) @ TranscodingStreams ~/.julia/packages/TranscodingStreams/O3BYF/src/memory.jl:14 length(!Matched::Compiler.DFSTree) @ Base ../usr/share/julia/Compiler/src/ssair/domtree.jl:121 length(!Matched::Base.Iterators.Flatten{Tuple{}}) @ Base iterators.jl:1240 ... Stacktrace: [1] run_lamem_save_grid(ParamFile::String, cores::Int64; verbose::Bool, directory::String) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:92 [2] run_lamem_save_grid @ ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:76 [inlined] [3] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:296 [4] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [5] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [6] run_lamem @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [7] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [8] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_compression.jl:7 [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [10] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_compression.jl:23 [inlined] [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [12] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [14] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:12 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [16] top-level scope @ none:6 [17] eval(m::Module, e::Any) @ Core ./boot.jl:489 [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:290 [19] _start() @ Base ./client.jl:557 rheology = Phase 0 (matrix): rho = 3000.0 eta = 1.0e20 ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000731602 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00190301 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000744283 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.855164213029e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.268605661839e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00095779 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.368738149400e-19 Momentum: |mRes|_2 = 1.268605661765e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4968e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000593235 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012823718e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.590416869505e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00099588 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.533293416683e-19 Momentum: |mRes|_2 = 1.590416869431e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3819e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000581204 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0191625 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.002f0, 0.002f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000686453 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00193548 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.00107636 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 8.192074820223e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve did not converge due to DIVERGED_BREAKDOWN iterations 30 1 SNES Function norm 1.996269872508e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00219885 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.385244779468e-17 |Div|_2 = 6.076331735643e-17 Momentum: |mRes|_2 = 1.996269780031e-13 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.6744e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000660164 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529035026473e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.131007585929e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00109067 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.533293416683e-18 Momentum: |mRes|_2 = 2.131007580413e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3964e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000685623 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0206952 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.02f0, 0.02f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.00098929 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0019625 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000764833 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.900625156863e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.193054234538e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00100381 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 9.501471788263e-18 Momentum: |mRes|_2 = 1.193053856190e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5133e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000582334 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.531321061608e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.505745134977e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00102818 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.201851678990e-17 Momentum: |mRes|_2 = 1.505744655332e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4719e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000619744 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.019386 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.2f0, 0.2f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.00182062 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00194654 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.00394446 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.408582653022e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.331272599822e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00115993 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.468687011488e-16 Momentum: |mRes|_2 = 2.331226336186e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4859e-04 s -------------------------------------------------------------------------- Saving output ... done (0.00108659 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.744843946556e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.645921959749e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00113633 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.642041997679e-16 Momentum: |mRes|_2 = 1.645840049152e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4160e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000770882 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0251292 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (2.0f0, 2.0f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000799133 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00199506 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.00115753 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.007037800205e-09 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve did not converge due to DIVERGED_BREAKDOWN iterations 60 1 SNES Function norm 1.382743448093e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00364922 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 7.771561172376e-15 |Div|_2 = 1.956356625210e-14 Momentum: |mRes|_2 = 1.382743434253e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.7395e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000880302 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 8.543884777184e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.658946166339e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00148449 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.285176065878e-15 Momentum: |mRes|_2 = 1.658896384666e-13 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.6162e-04 s -------------------------------------------------------------------------- Saving output ... done (0.0010089 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.027914 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (20.0f0, 20.0f0) τ_linear = [0.0020000000949949026, 0.019999999552965164, 0.20000000298023224, 2.0, 20.0] τ_anal = [0.002, 0.02, 0.20000000000000004, 2.0, 20.0] ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Tumut_Pond_Serpentinite-Raleigh_Paterson_1965 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000698513 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0018188 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000655384 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.732070997253e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.676863757548e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000955861 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.065758146821e-20 |Div|_2 = 1.355252715607e-19 Momentum: |mRes|_2 = 1.676863757493e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4561e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000518445 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012298712e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.344047801612e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00104342 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.714274154578e-19 Momentum: |mRes|_2 = 1.344047801612e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3884e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000517635 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0180157 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00066601264f0, 0.00066601264f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Tumut_Pond_Serpentinite-Raleigh_Paterson_1965 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000719133 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00187115 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000721173 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.538538587820e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 1.914610129611e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00119586 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.673617379884e-19 |Div|_2 = 2.395080882144e-18 Momentum: |mRes|_2 = 1.914610114630e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4606e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000562575 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012236651e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.060973992895e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00112436 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.761620017532e-18 Momentum: |mRes|_2 = 3.060973992895e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3991e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000513745 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0187252 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.001515742f0, 0.001515742f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Tumut_Pond_Serpentinite-Raleigh_Paterson_1965 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000747502 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00185587 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000750003 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.574877395261e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.864620915674e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00100612 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.201851678990e-17 Momentum: |mRes|_2 = 1.864620528344e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4606e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000583394 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529027476038e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.967399903915e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00110489 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.321126039445e-17 Momentum: |mRes|_2 = 6.967399903915e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 2.2883e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000555024 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0189364 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0034495955f0, 0.0034495955f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Tumut_Pond_Serpentinite-Raleigh_Paterson_1965 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000732683 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00185199 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000804692 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.757947606630e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.193302093907e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00101739 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.455514664586e-16 Momentum: |mRes|_2 = 3.193268922383e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4433e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000614404 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530525989706e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.585686169509e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00116307 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.594436429147e-16 Momentum: |mRes|_2 = 1.585686169509e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5293e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000738403 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0191156 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.007850748f0, 0.007850748f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Tumut_Pond_Serpentinite-Raleigh_Paterson_1965 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000973551 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00205584 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000752343 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.721068317499e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.327026433622e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00112894 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.514142333402e-15 Momentum: |mRes|_2 = 6.325214401243e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5456e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000594185 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673510065039e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.608776481627e-07 1 MMFD ||F||/||F0||=2.156412e-03 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 2 SNES Function norm 7.337506294466e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00270397 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.881784197001e-16 |Div|_2 = 2.717212732710e-15 Momentum: |mRes|_2 = 7.332473400632e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3943e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000923471 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0217115 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.017867092f0, 0.017867092f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000832702 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00200733 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000949331 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.732070997253e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.676863757548e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00118188 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.065758146821e-20 |Div|_2 = 1.355252715607e-19 Momentum: |mRes|_2 = 1.676863757493e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4668e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000682134 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012298712e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.344047801612e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00124465 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.714274154578e-19 Momentum: |mRes|_2 = 1.344047801612e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4523e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000650124 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0202052 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00066601264f0, 0.00066601264f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000896131 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00216371 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000842861 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.536173268120e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve did not converge due to DIVERGED_BREAKDOWN iterations 60 1 SNES Function norm 1.558141012496e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00342451 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.531965080989e-17 |Div|_2 = 1.438840450765e-16 Momentum: |mRes|_2 = 1.558140348159e-13 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.6528e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000976301 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012312017e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.061084525594e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00122546 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.505213034913e-19 |Div|_2 = 1.707403288634e-18 Momentum: |mRes|_2 = 3.061084525594e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4236e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000706323 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0234468 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.001515742f0, 0.001515742f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000774423 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00187686 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000616764 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.575177734083e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.883753867839e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00109001 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.250926888277e-17 Momentum: |mRes|_2 = 1.883753452494e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4757e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000596734 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529027475860e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.967410109455e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00123343 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.409296014026e-17 Momentum: |mRes|_2 = 6.967410109455e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3702e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000549365 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0192566 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0034495955f0, 0.0034495955f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000836742 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00193751 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.00106323 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.757910772242e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.290919515336e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00114062 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.455514664586e-16 Momentum: |mRes|_2 = 3.290887327778e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4363e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000640724 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530525989717e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.585686263715e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00117924 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.594436429147e-16 Momentum: |mRes|_2 = 1.585686263715e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5228e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000521045 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0197583 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.007850748f0, 0.007850748f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000822442 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00222227 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000878591 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.721073818982e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.206221377386e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00106154 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.489520491948e-15 Momentum: |mRes|_2 = 6.204433662484e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4719e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000656964 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673510065031e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.608776465926e-07 1 MMFD ||F||/||F0||=2.156412e-03 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 2 SNES Function norm 7.323744093763e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00315841 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.881784197001e-16 |Div|_2 = 2.717212732710e-15 Momentum: |mRes|_2 = 7.318701736004e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4330e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000780192 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0247295 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.017867092f0, 0.017867092f0) τ_num1 = [0.0006660126382485032, 0.0015157420421019197, 0.003449595533311367, 0.007850747555494308, 0.017867092043161392] τ_num2 = [0.0006660126382485032, 0.0015157420421019197, 0.003449595533311367, 0.007850747555494308, 0.017867092043161392] ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Dry_Olivine-Ranalli_1995 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000751103 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00201581 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.00100265 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 4.999601326924e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 2.245639208773e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00111784 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 2.019281067463e-19 Momentum: |mRes|_2 = 2.245639208773e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.6079e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000727723 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529983614622e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 6.355036424707e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0012783 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.151964808266e-18 |Div|_2 = 3.319788279835e-18 Momentum: |mRes|_2 = 6.355036424707e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4234e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000695503 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0201908 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.28025904f0, 0.28025904f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Dry_Olivine-Ranalli_1995 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000751893 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0019152 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000684303 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 5.166485402623e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve did not converge due to DIVERGED_BREAKDOWN iterations 30 1 SNES Function norm 2.672158256062e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0021523 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.035766082959e-18 |Div|_2 = 7.132699033577e-18 Momentum: |mRes|_2 = 2.672158256062e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5686e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000584845 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.532640059961e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 1.214267533388e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00106725 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.433061127045e-14 |Div|_2 = 1.730949475871e-13 Momentum: |mRes|_2 = 1.214267533264e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3886e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000559244 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0199765 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.5410955f0, 0.5410955f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Dry_Olivine-Ranalli_1995 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000699813 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00207082 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000729343 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.042474277838e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 3.155075594917e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00107671 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.717288626685e-17 Momentum: |mRes|_2 = 3.155075594871e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5001e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000603655 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.542469102073e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 2.344382818817e-07 1 PICARD ||F||/||F0||=1.519890e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 2 SNES Function norm 1.130031258622e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00184999 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.488670298144e-13 |Div|_2 = 4.858601896386e-13 Momentum: |mRes|_2 = 1.130020813724e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4378e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000528245 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0197172 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.0446918f0, 1.0446918f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Dry_Olivine-Ranalli_1995 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000792022 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00226048 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000754523 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.784431980867e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.724013332527e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00111432 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.481742263891e-16 Momentum: |mRes|_2 = 7.724013331105e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4981e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000583005 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.580001929353e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.526537046699e-06 1 PICARD ||F||/||F0||=2.864893e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 2 SNES Function norm 2.764898326264e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00191485 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.594436429147e-16 Momentum: |mRes|_2 = 2.764898321667e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4573e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000596605 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0209976 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (2.0169842f0, 2.0169842f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Dry_Olivine-Ranalli_1995 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000762203 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00196459 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000863332 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.729160028127e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 1.853669481181e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00121777 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.534358746845e-15 Momentum: |mRes|_2 = 1.853669474831e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4960e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000602364 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.836925303655e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.739374791909e-05 1 PICARD ||F||/||F0||=4.757610e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 2 SNES Function norm 1.216630214054e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.0018578 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.294731409828e-15 Momentum: |mRes|_2 = 1.216630213985e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4395e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000636374 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0202099 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (3.8941867f0, 3.8941867f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000819262 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00221027 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000924791 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 4.999601326924e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 2.245639208773e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00118318 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 2.019281067463e-19 Momentum: |mRes|_2 = 2.245639208773e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.8207e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000782713 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529983614622e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 6.355036424707e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00157857 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.151964808266e-18 |Div|_2 = 3.319788279835e-18 Momentum: |mRes|_2 = 6.355036424707e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4390e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000689973 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0246791 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.28025904f0, 0.28025904f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000798122 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00225044 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000931611 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 5.166485402623e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve did not converge due to DIVERGED_BREAKDOWN iterations 30 1 SNES Function norm 2.672158256062e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00273708 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.035766082959e-18 |Div|_2 = 7.132699033577e-18 Momentum: |mRes|_2 = 2.672158256062e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5234e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000802832 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.532640059961e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 1.214267533388e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00147489 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.433061127045e-14 |Div|_2 = 1.730949475871e-13 Momentum: |mRes|_2 = 1.214267533264e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3519e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000974781 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0273463 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.5410955f0, 0.5410955f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000805052 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00233338 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000949571 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.042474277838e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 3.155075594917e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00116798 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.717288626685e-17 Momentum: |mRes|_2 = 3.155075594871e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4213e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000644004 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.542469102073e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 2.344382818817e-07 1 PICARD ||F||/||F0||=1.519890e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 2 SNES Function norm 1.130031258622e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.0024949 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.488670298144e-13 |Div|_2 = 4.858601896386e-13 Momentum: |mRes|_2 = 1.130020813724e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3336e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000722323 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0237798 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.0446918f0, 1.0446918f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000737873 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00185914 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000718843 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.784431980867e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.724013332527e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0010519 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.481742263891e-16 Momentum: |mRes|_2 = 7.724013331105e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5866e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000556074 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.580001929353e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.526537046699e-06 1 PICARD ||F||/||F0||=2.864893e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 2 SNES Function norm 2.764898326264e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00208848 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.594436429147e-16 Momentum: |mRes|_2 = 2.764898321667e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5201e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000881282 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0225053 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (2.0169842f0, 2.0169842f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000794182 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00227739 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000700613 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.729160028127e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 1.853669481181e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00152969 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.534358746845e-15 Momentum: |mRes|_2 = 1.853669474831e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 3.1587e-04 s -------------------------------------------------------------------------- Saving output ... done (0.00149532 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.836925303655e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.739374791909e-05 1 PICARD ||F||/||F0||=4.757610e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 2 SNES Function norm 1.216630214054e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00238063 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.294731409828e-15 Momentum: |mRes|_2 = 1.216630213985e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4697e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000659044 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0259928 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (3.8941867f0, 3.8941867f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology dislocation creep profile: Wet_Quarzite-Ueda_et_al_2008 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000933461 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0019949 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000691603 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.733398697939e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.470853950173e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00136188 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.196926789768e-19 Momentum: |mRes|_2 = 8.470853949328e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4572e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000647904 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012429987e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.141630061900e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00158589 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.735570302230e-19 Momentum: |mRes|_2 = 5.141630061900e-13 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4267e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000596894 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0251627 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00029242327f0, 0.00029242327f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology dislocation creep profile: Wet_Quarzite-Ueda_et_al_2008 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000970051 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00193763 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000673544 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.537125835156e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 1.773537767839e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00119171 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.915082863629e-18 Momentum: |mRes|_2 = 1.773537757500e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4979e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000552844 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012259639e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.412456206055e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00117986 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.622685226975e-18 Momentum: |mRes|_2 = 1.412456206055e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4757e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000571635 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0196243 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00079578283f0, 0.00079578283f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology dislocation creep profile: Wet_Quarzite-Ueda_et_al_2008 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000816682 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00191563 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000812922 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.575355648999e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.497363577973e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00108095 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.365922630907e-17 Momentum: |mRes|_2 = 1.497362954963e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4955e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000690193 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529027377354e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.845756209644e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00114961 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.226634733347e-17 Momentum: |mRes|_2 = 3.845756209644e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4388e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000724143 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0196378 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0021655946f0, 0.0021655946f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology dislocation creep profile: Wet_Quarzite-Ueda_et_al_2008 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000786033 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00190137 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000830272 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.758143280721e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.557709372943e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00124981 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.775557561563e-17 |Div|_2 = 1.316562550716e-16 Momentum: |mRes|_2 = 2.557675488163e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5225e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000629753 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530525703377e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.046566607204e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00139102 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.455514664586e-16 Momentum: |mRes|_2 = 1.046566607204e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5158e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000695283 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0216845 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0058933166f0, 0.0058933166f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology dislocation creep profile: Wet_Quarzite-Ueda_et_al_2008 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.00100518 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00224372 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000943971 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.721067804689e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.655639651614e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00166337 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.336885555458e-15 Momentum: |mRes|_2 = 5.654059359348e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5485e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000823822 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673510051971e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.848062535603e-07 1 MMFD ||F||/||F0||=1.701850e-03 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 2 SNES Function norm 4.525074343373e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00340216 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.881784197001e-16 |Div|_2 = 2.383749925626e-15 Momentum: |mRes|_2 = 4.518791340168e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4529e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000701113 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0293338 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.016037712f0, 0.016037712f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000825452 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00212699 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000786822 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.733398697939e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.470853950173e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00113415 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.196926789768e-19 Momentum: |mRes|_2 = 8.470853949328e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5250e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000661224 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012429987e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.141630061900e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00118041 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.735570302230e-19 Momentum: |mRes|_2 = 5.141630061900e-13 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5540e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000640783 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0198007 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00029242327f0, 0.00029242327f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000821952 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00191458 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000836722 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.537750739444e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 5 1 SNES Function norm 2.281739069316e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00126913 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.301042606983e-18 |Div|_2 = 4.215859886717e-18 Momentum: |mRes|_2 = 2.281739030369e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5056e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000628104 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012268549e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.412613368437e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00115052 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.502314598737e-18 Momentum: |mRes|_2 = 1.412613368437e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3580e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000659214 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0199314 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00079578283f0, 0.00079578283f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000856762 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.002094 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000904701 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.575355648999e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.497363577973e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00115398 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.365922630907e-17 Momentum: |mRes|_2 = 1.497362954963e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5486e-04 s -------------------------------------------------------------------------- Saving output ... done (0.00116606 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529027377354e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.845756209644e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00120556 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.226634733347e-17 Momentum: |mRes|_2 = 3.845756209644e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5824e-04 s -------------------------------------------------------------------------- Saving output ... done (0.00101112 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0227889 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0021655946f0, 0.0021655946f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.00104865 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00247471 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000884692 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.758143280721e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.557709372943e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00120865 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.775557561563e-17 |Div|_2 = 1.316562550716e-16 Momentum: |mRes|_2 = 2.557675488163e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5252e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000821802 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530525703371e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.046566599353e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00158213 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.468687011488e-16 Momentum: |mRes|_2 = 1.046566599353e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4695e-04 s -------------------------------------------------------------------------- Saving output ... done (0.00119815 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0267143 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0058933166f0, 0.0058933166f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.00102872 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00211458 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000926901 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.721067804689e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.613639044842e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00108444 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.336885555458e-15 Momentum: |mRes|_2 = 5.612046925667e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4810e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000641174 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673510051970e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.848062534818e-07 1 MMFD ||F||/||F0||=1.701850e-03 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 2 SNES Function norm 4.645808098495e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00336869 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.790180836525e-15 Momentum: |mRes|_2 = 4.642357742975e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4391e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000782152 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0249151 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.016037712f0, 0.016037712f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology diffusion creep profile : Dry_Plagioclase_RybackiDresen_2000 (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88835 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000867131 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0022176 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.00100221 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643776193159e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.468632384106e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00106425 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.496925551340e-19 Momentum: |mRes|_2 = 1.468632376477e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4691e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000827662 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012493598e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.741239287980e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00112347 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.509145554517e-19 Momentum: |mRes|_2 = 1.741239287915e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4306e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000698704 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0231254 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.6801193f-6, 1.8722288f-6) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology diffusion creep profile : Dry_Plagioclase_RybackiDresen_2000 (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88835 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000712013 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00215331 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000889042 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643775949684e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.290700433835e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00100395 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.651407549307e-18 Momentum: |mRes|_2 = 6.290700217074e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5141e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000844502 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012083211e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.049795325108e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0014581 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.707403288634e-18 Momentum: |mRes|_2 = 2.049795317997e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5237e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000692853 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.023964 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.6801194f-5, 1.8722289f-5) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology diffusion creep profile : Dry_Plagioclase_RybackiDresen_2000 (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88835 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000785002 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00214122 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000825002 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643775888174e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.509971681121e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00099495 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.387778780781e-17 Momentum: |mRes|_2 = 4.509950329163e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.6035e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000835142 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529025548536e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.248139529364e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00132657 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.250926888277e-17 Momentum: |mRes|_2 = 1.248138902504e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3575e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000820712 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0234056 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00016801193f0, 0.00018722289f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology diffusion creep profile : Dry_Plagioclase_RybackiDresen_2000 (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88835 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000756013 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00224033 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.00098142 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643775926557e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.453753162213e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0010314 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.241267076624e-16 Momentum: |mRes|_2 = 1.453700169309e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5657e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000976241 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530507771875e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.935424250481e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00135584 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.699674944388e-16 Momentum: |mRes|_2 = 1.935349616958e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4592e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000595244 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0246016 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0016801193f0, 0.0018722288f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology diffusion creep profile : Dry_Plagioclase_RybackiDresen_2000 (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88835 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000852302 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00209699 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.00103792 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643775934397e-03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.487533228243e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00122982 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.373270039557e-15 Momentum: |mRes|_2 = 1.481180744917e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4917e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000925421 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673362537378e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.370876409381e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00145388 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.505979781574e-15 Momentum: |mRes|_2 = 2.366088586156e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4301e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000757933 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0255524 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.016801193f0, 0.01872228f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88839 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000842322 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00207308 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000863431 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643742963921e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.318548988781e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00108452 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.580482678012e-19 Momentum: |mRes|_2 = 4.318548985889e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5676e-04 s -------------------------------------------------------------------------- Saving output ... done (0.0047868 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529013223529e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.854501415834e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00118172 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.065758146821e-20 |Div|_2 = 1.484604966916e-19 Momentum: |mRes|_2 = 1.854501415775e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4405e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000636264 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0242144 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.6800853f-6, 1.8721911f-6) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88839 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000812592 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00225135 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.00097502 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643742768540e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.768238622152e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00108293 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.505213034913e-19 |Div|_2 = 1.761620017532e-18 Momentum: |mRes|_2 = 4.768238296738e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 9.4659e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000885651 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012070155e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.494164679288e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0011334 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.707403288634e-18 Momentum: |mRes|_2 = 1.494164669533e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4034e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000760243 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.025519 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.6800854f-5, 1.872191f-5) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88839 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000734772 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00189867 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000784382 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643742707915e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.303083294658e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000951351 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.097135458930e-17 Momentum: |mRes|_2 = 1.303082832789e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4917e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000670114 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529025552216e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.737093484513e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00108633 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.430489624538e-17 Momentum: |mRes|_2 = 1.737092895512e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4793e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000764013 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0200754 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00016800854f0, 0.0001872191f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88839 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000782382 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0021914 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.00097472 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643742746428e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.276251701487e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00114652 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.401587864986e-16 Momentum: |mRes|_2 = 1.276174737524e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5338e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000823732 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530507773124e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.728004276619e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00121251 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.455514664586e-16 Momentum: |mRes|_2 = 1.727942975830e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.6798e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000839111 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.022987 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0016800853f0, 0.001872191f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88839 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000773053 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00191777 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000806952 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643742754277e-03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.380948806640e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00102462 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.368774871884e-15 Momentum: |mRes|_2 = 1.374148521835e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4584e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000890891 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673362539976e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.931460429801e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00116289 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.382216518796e-15 Momentum: |mRes|_2 = 2.928199963534e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4049e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000747343 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0199203 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.016800852f0, 0.018721903f0) Saved file: Model3D.vts Fatal error in internal_Init_thread: Other MPI error, error stack: internal_Init_thread(67)...........: MPI_Init_thread(argc=0x7ffce0c6340c, argv=0x7ffce0c63400, required=1, provided=0x7ffce0c62fcc) failed MPII_Init_thread(234)..............: MPID_Init(67)......................: init_world(171)....................: channel initialization failed MPIDI_CH3_Init(84).................: MPID_nem_init(314).................: MPID_nem_tcp_init(175).............: MPID_nem_tcp_get_business_card(397): GetSockInterfaceAddr(370)..........: gethostbyname failed, LaMEM-primary-i2jB4IWw (errno 2) Saved file: Model3D.vts Subduction3D: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:13 Got exception outside of a @test LoadError: MethodError: no method matching length(::Nothing) The function `length` exists, but no method is defined for this combination of argument types. Closest candidates are: length(!Matched::TranscodingStreams.Memory) @ TranscodingStreams ~/.julia/packages/TranscodingStreams/O3BYF/src/memory.jl:14 length(!Matched::Compiler.DFSTree) @ Base ../usr/share/julia/Compiler/src/ssair/domtree.jl:121 length(!Matched::Base.Iterators.Flatten{Tuple{}}) @ Base iterators.jl:1240 ... Stacktrace: [1] run_lamem_save_grid(ParamFile::String, cores::Int64; verbose::Bool, directory::String) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:92 [2] run_lamem_save_grid @ ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:76 [inlined] [3] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:296 [4] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [5] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [6] run_lamem @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [7] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [8] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/example_scripts/Subduction3D.jl:99 [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [10] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:6 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [12] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:14 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [14] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:15 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [16] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [18] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:14 [inlined] [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:290 [23] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/LaMEM/M6C0P/example_scripts/Subduction3D.jl:91 caused by: MethodError: no method matching length(::Nothing) The function `length` exists, but no method is defined for this combination of argument types. Closest candidates are: length(!Matched::TranscodingStreams.Memory) @ TranscodingStreams ~/.julia/packages/TranscodingStreams/O3BYF/src/memory.jl:14 length(!Matched::Compiler.DFSTree) @ Base ../usr/share/julia/Compiler/src/ssair/domtree.jl:121 length(!Matched::Base.Iterators.Flatten{Tuple{}}) @ Base iterators.jl:1240 ... Stacktrace: [1] run_lamem_save_grid(ParamFile::String, cores::Int64; verbose::Bool, directory::String) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:92 [2] run_lamem_save_grid @ ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:76 [inlined] [3] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:296 [4] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [5] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [6] run_lamem(model::Model, cores::Int64, args::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [7] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/example_scripts/Subduction3D.jl:94 [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [9] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:6 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [11] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:14 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [13] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:15 [inlined] [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [15] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1855 [inlined] [17] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:14 [inlined] [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [19] top-level scope @ none:6 [20] eval(m::Module, e::Any) @ Core ./boot.jl:489 [21] exec_options(opts::Base.JLOptions) @ Base ./client.jl:290 [22] _start() @ Base ./client.jl:557 Precompiling packages... 6807.3 ms ✓ ImageAxes 8461.7 ms ✓ FreeTypeAbstraction 14455.1 ms ✓ GridLayoutBase 3673.9 ms ✓ Packing 6014.1 ms ✓ ShaderAbstractions 1678.3 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 9144.4 ms ✓ KernelDensity 4861.5 ms ✓ ImageMetadata 31219.0 ms ✓ MathTeXEngine 9083.5 ms ✓ Netpbm ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 542 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1213 wait_forever at ./task.jl:1150 jfptr_wait_forever_73684.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3798 [inlined] ijl_apply_generic at /source/src/gf.c:3998 jl_apply at /source/src/julia.h:2345 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1213 wait_forever at ./task.jl:1150 jfptr_wait_forever_73684.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3798 [inlined] ijl_apply_generic at /source/src/gf.c:3998 jl_apply at /source/src/julia.h:2345 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000796bd1a16ef0 Total snapshots: 243. Utilization: 0% ╎243 @Base/task.jl:1150 wait_forever() 242╎ 243 @Base/task.jl:1213 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1213 wait_forever at ./task.jl:1150 jfptr_wait_forever_73684.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3798 [inlined] ijl_apply_generic at /source/src/gf.c:3998 jl_apply at /source/src/julia.h:2345 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 32303092 (Pool: 32302395; Big: 697); GC: 34 [542] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/LaMEM/M6C0P/example_scripts/StrengthEnvelop.jl:1 _ZNK4llvm10DataLayout12getAlignmentEPNS_4TypeEb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZNK4llvm10DataLayout16getTypeAllocSizeEPNS_4TypeE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZL15simplifyGEPInstPN4llvm4TypeEPNS_5ValueENS_8ArrayRefIS3_EENS_14GEPNoWrapFlagsERKNS_13SimplifyQueryEj.constprop.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZL31simplifyInstructionWithOperandsPN4llvm11InstructionENS_8ArrayRefIPNS_5ValueEEERKNS_13SimplifyQueryEj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm19simplifyInstructionEPNS_11InstructionERKNS_13SimplifyQueryE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass18processInstructionEPNS_11InstructionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass12processBlockEPNS_10BasicBlockE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass17iterateOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass7runImplERNS_8FunctionERNS_15AssumptionCacheERNS_13DominatorTreeERKNS_17TargetLibraryInfoERNS_9AAResultsEPNS_23MemoryDependenceResultsERNS_8LoopInfoEPNS_25OptimizationRemarkEmitterEPNS_9MemorySSAE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:791 operator() at /source/src/jitlayers.cpp:1518 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1479 [inlined] operator() at /source/src/jitlayers.cpp:1631 [inlined] addModule at /source/src/jitlayers.cpp:2088 jl_compile_codeinst_now at /source/src/jitlayers.cpp:683 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:883 jl_compile_method_internal at /source/src/gf.c:3310 _jl_invoke at /source/src/gf.c:3790 [inlined] ijl_apply_generic at /source/src/gf.c:3998 jl_apply at /source/src/julia.h:2345 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:896 ansi_write_ at ./strings/annotated_io.jl:216 [inlined] print at ./strings/annotated_io.jl:241 [inlined] print at ./strings/io.jl:46 println at ./strings/io.jl:77 [inlined] print_tree at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1249 tree at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1309 print_group at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:389 #print#5 at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:331 print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 [inlined] print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 [inlined] print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 _peek_report at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:94 unknown function (ip: 0x7933b520aeef) at (unknown file) _jl_invoke at /source/src/gf.c:3798 [inlined] ijl_apply_generic at /source/src/gf.c:3998 jl_apply at /source/src/julia.h:2345 [inlined] jl_f_invokelatest at /source/src/builtins.c:877 profile_printing_listener at ./Base.jl:337 #start_profile_listener##0 at ./Base.jl:355 jfptr_YY.start_profile_listenerYY.YY.0_14662.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3798 [inlined] ijl_apply_generic at /source/src/gf.c:3998 jl_apply at /source/src/julia.h:2345 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 122290032 (Pool: 122288308; Big: 1724); GC: 123 PkgEval terminated after 2734.19s: test duration exceeded the time limit