Package evaluation of BoundaryLayerDynamics on Julia 1.13.0-DEV.811 (41570e9800*) started at 2025-07-03T18:39:43.085 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.84s ################################################################################ # Installation # Installing BoundaryLayerDynamics... Resolving package versions... Installed HDF5 ─ v0.16.16 Updating `~/.julia/environments/v1.13/Project.toml` [9d12ad70] + BoundaryLayerDynamics v1.0.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 ⌅ [79e6a3ab] + Adapt v3.7.2 ⌃ [4fba245c] + ArrayInterface v7.7.1 [9d12ad70] + BoundaryLayerDynamics v1.0.0 [34da2185] + Compat v4.17.0 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.5 [e2ba6199] + ExprTools v0.1.10 [7a1cc6ca] + FFTW v1.9.0 ⌅ [46192b85] + GPUArraysCore v0.1.5 ⌅ [f67ccb44] + HDF5 v0.16.16 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [da04e1cc] + MPI v0.20.22 [3da0fdf6] + MPIPreferences v0.1.11 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [eebad327] + PkgVersion v0.3.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [3cdcf5f2] + RecipesBase v1.3.4 ⌅ [731186ca] + RecursiveArrayTools v2.38.10 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 ⌅ [2efcf032] + SymbolicIndexingInterface v0.2.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [a759f4b9] + TimerOutputs v0.5.29 [f5851436] + FFTW_jll v3.3.11+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [856f044c] + MKL_jll v2025.0.1+1 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [477f73a3] + libaec_jll v1.1.3+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.14.1+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building HDF5 → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/114e20044677badbc631ee6fdc80a67920561a29/build.log` Installation completed after 17.13s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 25.04s ################################################################################ # Testing # Testing BoundaryLayerDynamics Status `/tmp/jl_wdxFS3/Project.toml` [9d12ad70] BoundaryLayerDynamics v1.0.0 ⌅ [f67ccb44] HDF5 v0.16.16 [da04e1cc] MPI v0.20.22 [a759f4b9] TimerOutputs v0.5.29 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_wdxFS3/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 ⌅ [79e6a3ab] Adapt v3.7.2 ⌃ [4fba245c] ArrayInterface v7.7.1 [9d12ad70] BoundaryLayerDynamics v1.0.0 [34da2185] Compat v4.17.0 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [7a1cc6ca] FFTW v1.9.0 ⌅ [46192b85] GPUArraysCore v0.1.5 ⌅ [f67ccb44] HDF5 v0.16.16 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [da04e1cc] MPI v0.20.22 [3da0fdf6] MPIPreferences v0.1.11 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [eebad327] PkgVersion v0.3.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [3cdcf5f2] RecipesBase v1.3.4 ⌅ [731186ca] RecursiveArrayTools v2.38.10 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 ⌅ [2efcf032] SymbolicIndexingInterface v0.2.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [a759f4b9] TimerOutputs v0.5.29 [f5851436] FFTW_jll v3.3.11+0 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.1+0 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [856f044c] MKL_jll v2025.0.1+1 [7cb0a576] MPICH_jll v4.3.1+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.8+0 [477f73a3] libaec_jll v1.1.3+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 15286.7 ms ✓ HDF5 1 dependency successfully precompiled in 16 seconds. 41 already precompiled. Precompiling packages... 4959.2 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 3435.2 ms ✓ RecursiveArrayTools 2 dependencies successfully precompiled in 9 seconds. 28 already precompiled. Testing BoundaryLayerDynamics.jl... (single process) Test Summary: | Pass Total Time Atmospheric Boundary Layer Simulations | 290 290 14m09.6s ─────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 887s / 95.8% 30.0GiB / 99.0% Section ncalls time %tot avg alloc %tot avg ─────────────────────────────────────────────────────────────────────────────────────────────── BoundaryLayerDynamics.jl Tests 1 850s 100.0% 850s 29.7GiB 100.0% 29.7GiB Advection 1 279s 32.8% 279s 5.06GiB 17.0% 5.06GiB Nonlinear Processes 28 185s 21.7% 6.59s 398MiB 1.3% 14.2MiB Resolved Advection 28 183s 21.6% 6.54s 371MiB 1.2% 13.3MiB Linear Processes 28 592μs 0.0% 21.1μs 17.1KiB 0.0% 624B Laminar Flows 1 124s 14.6% 124s 6.31GiB 21.2% 6.31GiB ABL Simulation 1 114s 13.5% 114s 5.87GiB 19.7% 5.87GiB LES 1 105s 12.4% 105s 2.87GiB 9.6% 2.87GiB Nonlinear Processes 2 39.5s 4.6% 19.8s 854MiB 2.8% 427MiB Static Smagorinsky SGS Model 2 30.7s 3.6% 15.3s 580MiB 1.9% 290MiB Linear Processes 2 48.5ms 0.0% 24.2ms 211KiB 0.0% 106KiB Pressure 1 63.1s 7.4% 63.1s 3.46GiB 11.6% 3.46GiB Projections 11 119ms 0.0% 10.8ms 3.46MiB 0.0% 322KiB Pressure Solver 11 119ms 0.0% 10.8ms 3.46MiB 0.0% 322KiB Logging 1 48.1s 5.7% 48.1s 1.57GiB 5.3% 1.57GiB ODE 1 33.9s 4.0% 33.9s 1.20GiB 4.0% 1.20GiB Transforms 1 29.3s 3.4% 29.3s 702MiB 2.3% 702MiB Output 1 26.6s 3.1% 26.6s 1.64GiB 5.5% 1.64GiB Diffusion 1 12.7s 1.5% 12.7s 603MiB 2.0% 603MiB Linear Processes 1 1.18s 0.1% 1.18s 12.3MiB 0.0% 12.3MiB Molecular Diffusion 3 1.18s 0.1% 393ms 12.3MiB 0.0% 4.09MiB Nonlinear Processes 1 226ms 0.0% 226ms 1.84MiB 0.0% 1.84MiB Derivatives 1 9.54s 1.1% 9.54s 410MiB 1.3% 410MiB Nonlinear Processes 1 2.77s 0.3% 2.77s 56.5MiB 0.2% 56.5MiB VorticityTest 1 2.15s 0.3% 2.15s 48.4MiB 0.2% 48.4MiB Linear Processes 1 13.8ms 0.0% 13.8ms 78.1KiB 0.0% 78.1KiB Grid 1 2.45s 0.3% 2.45s 57.7MiB 0.2% 57.7MiB ─────────────────────────────────────────────────────────────────────────────────────────────── PrecompilingPrecompilingPrecompilingPrecompiling packages...packages...packages...packages... SymbolicIndexingInterfaceSymbolicIndexingInterfaceSymbolicIndexingInterface Being precompiled by another process (pid: 184, pidfile: /home/pkgeval/.julia/compiled/v1.13/SymbolicIndexingInterface/nIEWT_gFADj.ji.pidfile) Being precompiled by another process (pid: 184, pidfile: /home/pkgeval/.julia/compiled/v1.13/SymbolicIndexingInterface/nIEWT_gFADj.ji.pidfile) Being precompiled by another process (pid: 184, pidfile: /home/pkgeval/.julia/compiled/v1.13/SymbolicIndexingInterface/nIEWT_gFADj.ji.pidfile) HDF5 Being precompiled by another process (pid: 183, pidfile: /home/pkgeval/.julia/compiled/v1.13/HDF5/L7Dga_gFADj.ji.pidfile) HDF5 Being precompiled by another process (pid: 183, pidfile: /home/pkgeval/.julia/compiled/v1.13/HDF5/L7Dga_gFADj.ji.pidfile) RecipesBase Being precompiled by another process (pid: 185, pidfile: /home/pkgeval/.julia/compiled/v1.13/RecipesBase/8e2Mm_gFADj.ji.pidfile) 7674.1 ms ✓ SymbolicIndexingInterface 4888.7 ms ✓ Adapt RecipesBase Being precompiled by another process (pid: 185, pidfile: /home/pkgeval/.julia/compiled/v1.13/RecipesBase/8e2Mm_gFADj.ji.pidfile) MPI Being precompiled by another process (pid: 186, pidfile: /home/pkgeval/.julia/compiled/v1.13/MPI/nO0XF_gFADj.ji.pidfile) HDF5 Being precompiled by another process (pid: 183, pidfile: /home/pkgeval/.julia/compiled/v1.13/HDF5/L7Dga_gFADj.ji.pidfile) 7700.1 ms ✓ ArrayInterface 6081.5 ms ✓ GPUArraysCore 30024.7 ms ✓ RecipesBase MPI Being precompiled by another process (pid: 186, pidfile: /home/pkgeval/.julia/compiled/v1.13/MPI/nO0XF_gFADj.ji.pidfile) 6427.5 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 4721.7 ms ✓ Adapt 37434.4 ms ✓ SymbolicIndexingInterface 6542.7 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 27901.8 ms ✓ RecipesBase 7564.8 ms ✓ ArrayInterface 5861.2 ms ✓ GPUArraysCore 13244.8 ms ? RecursiveArrayTools 4433.4 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 4667.5 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 59694.6 ms ✓ MPI 50014.0 ms ✓ MPI 3031.2 ms ✓ Adapt 65460.2 ms ✓ SymbolicIndexingInterface 62736.9 ms ✓ RecipesBase 8699.8 ms ✓ RecursiveArrayTools 36002.6 ms ✓ MPI 3976.1 ms ✓ ArrayInterface 2013.0 ms ✓ GPUArraysCore 2109.0 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 3259.8 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 76555.5 ms ✓ HDF5 77227.0 ms ✓ HDF5 10 dependencies successfully precompiled in 83 seconds. 69 already precompiled. 67333.3 ms ✓ HDF5 9 dependencies successfully precompiled in 84 seconds. 69 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 1 dependency had output during precompilation: ┌ RecursiveArrayTools │ ┌ Warning: Module ArrayInterface with build ID fafbfcfd-a336-c439-ce44-152d04c4d20d is missing from the cache. │ │ This may mean ArrayInterface [4fba245c-0d91-5ea0-9b3e-6abc04ee57a9] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2615 └  7874.3 ms ✓ RecursiveArrayTools 82006.7 ms ✓ HDF5 10 dependencies successfully precompiled in 88 seconds. 69 already precompiled. 20001.5 ms ✓ RecipesBase Precompiling packages... Precompiling packages... Precompiling packages... RecursiveArrayTools Being precompiled by another process (pid: 185, pidfile: /home/pkgeval/.julia/compiled/v1.13/RecursiveArrayTools/6B7tG_gFADj.ji.pidfile) RecursiveArrayTools Being precompiled by another process (pid: 185, pidfile: /home/pkgeval/.julia/compiled/v1.13/RecursiveArrayTools/6B7tG_gFADj.ji.pidfile) 16303.7 ms ✓ RecursiveArrayTools 1 dependency successfully precompiled in 18 seconds. 29 already precompiled. 12543.3 ms ✓ RecursiveArrayTools 1 dependency successfully precompiled in 13 seconds. 29 already precompiled. 16362.1 ms ✓ RecursiveArrayTools 1 dependency successfully precompiled in 17 seconds. 29 already precompiled. 40003.5 ms ✓ MPI 1119.8 ms ✓ Adapt 140365.3 ms ✓ SymbolicIndexingInterface 1746.7 ms ✓ ArrayInterface 1430.5 ms ✓ GPUArraysCore 1425.6 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1395.5 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 3319.2 ms ✓ RecursiveArrayTools 10 dependencies successfully precompiled in 153 seconds. 69 already precompiled. Fatal error in internal_Init_thread: Other MPI error, error stack: internal_Init_thread(71)...........: MPI_Init_thread(argc=(nil), argv=(nil), required=2, provided=0x7ffc398b7410) failed MPII_Init_thread(257)..............: MPID_Init(65)......................: init_world(169)....................: channel initialization failed MPIDI_CH3_Init(84).................: MPID_nem_init(314).................: MPID_nem_tcp_init(175).............: MPID_nem_tcp_get_business_card(400): GetSockInterfaceAddr(373)..........: gethostbyname failed, BoundaryLayerDynamics-primary-gGluLy0v (errno 2) Error During MPI Tests (n=4) at /home/pkgeval/.julia/packages/BoundaryLayerDynamics/x9Zng/test/runtests.jl:47 Stacktrace: [1] top-level scope @ ~/.julia/packages/BoundaryLayerDynamics/x9Zng/test/runtests.jl:47 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [3] top-level scope @ none:6 [4] eval(m::Module, e::Any) @ Core ./boot.jl:489 [5] exec_options(opts::Base.JLOptions) @ Base ./client.jl:290 [6] _start() @ Base ./client.jl:557 Testing failed after 915.68s ERROR: LoadError: Package BoundaryLayerDynamics errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2446 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2301 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:500 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:309 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:324 [12] _start() @ Base ./client.jl:557 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1154.63s: package tests unexpectedly errored