Package evaluation of LaplacianExpectationMaximization on Julia 1.13.0-DEV.774 (40c6d1b7c1*) started at 2025-06-24T21:23:13.673 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.3s ################################################################################ # Installation # Installing LaplacianExpectationMaximization... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [610349f3] + LaplacianExpectationMaximization v0.1.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.15.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.19.0 [d360d2e6] + ChainRulesCore v1.25.2 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [b0b7db55] + ComponentArrays v0.15.28 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 ⌅ [f6369f11] + ForwardDiff v0.10.38 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.4 [033835bb] + JLD2 v0.5.14 [692b3bcd] + JLLWrappers v1.7.0 [610349f3] + LaplacianExpectationMaximization v0.1.0 [d3d80556] + LineSearches v7.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [429524aa] + Optim v1.13.2 [3bd65402] + Optimisers v0.4.6 [65fa8838] + OptimizationCallbacks v0.1.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.14.1+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.0+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.85s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 6 direct dependencies failed to precompile: EnzymeSpecialFunctionsExt Failed to precompile EnzymeSpecialFunctionsExt [7685dddb-33e3-5e96-bcc8-848bc5a48302] to "/home/pkgeval/.julia/compiled/v1.13/EnzymeSpecialFunctionsExt/jl_CWEJfq" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `verbose_stmt_info` not defined in `Compiler` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty(x::Module, f::Symbol) @ Base ./Base_compiler.jl:50 [2] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/src/compiler/interpreter.jl:269 [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [4] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/src/compiler.jl:1419 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [6] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/src/Enzyme.jl:139 [7] include(mod::Module, _path::String) @ Base ./Base.jl:309 [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [9] top-level scope @ stdin:5 [10] eval(m::Module, e::Any) @ Core ./boot.jl:489 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [12] include_string @ ./loading.jl:2856 [inlined] [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [14] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/src/compiler/interpreter.jl:1 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/src/compiler.jl:1 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/src/Enzyme.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Enzyme [7da242da-08ed-463a-9acd-ee780be4f1d9] to "/home/pkgeval/.julia/compiled/v1.13/Enzyme/jl_Vz2Lkm" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#232 @ ./reflection.jl:1282 [inlined] [8] invokelatest_gr @ ./reflection.jl:1274 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [10] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [13] macro expansion @ ./loading.jl:2394 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [16] require @ ./loading.jl:2335 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/ext/EnzymeSpecialFunctionsExt.jl:4 [21] include(mod::Module, _path::String) @ Base ./Base.jl:309 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [26] include_string @ ./loading.jl:2856 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [28] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/ext/EnzymeSpecialFunctionsExt.jl:1 in expression starting at stdin:5 Enzyme Failed to precompile Enzyme [7da242da-08ed-463a-9acd-ee780be4f1d9] to "/home/pkgeval/.julia/compiled/v1.13/Enzyme/jl_93DZgg" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `verbose_stmt_info` not defined in `Compiler` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty(x::Module, f::Symbol) @ Base ./Base_compiler.jl:50 [2] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/src/compiler/interpreter.jl:269 [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [4] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/src/compiler.jl:1419 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [6] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/src/Enzyme.jl:139 [7] include(mod::Module, _path::String) @ Base ./Base.jl:309 [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [9] top-level scope @ stdin:5 [10] eval(m::Module, e::Any) @ Core ./boot.jl:489 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [12] include_string @ ./loading.jl:2856 [inlined] [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [14] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/src/compiler/interpreter.jl:1 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/src/compiler.jl:1 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/src/Enzyme.jl:1 in expression starting at stdin:5 EnzymeGPUArraysCoreExt Failed to precompile EnzymeGPUArraysCoreExt [b0760466-a0dd-53b2-99ee-2e0a1dbc83d2] to "/home/pkgeval/.julia/compiled/v1.13/EnzymeGPUArraysCoreExt/jl_kIu5gS" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `verbose_stmt_info` not defined in `Compiler` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty(x::Module, f::Symbol) @ Base ./Base_compiler.jl:50 [2] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/src/compiler/interpreter.jl:269 [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [4] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/src/compiler.jl:1419 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [6] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/src/Enzyme.jl:139 [7] include(mod::Module, _path::String) @ Base ./Base.jl:309 [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [9] top-level scope @ stdin:5 [10] eval(m::Module, e::Any) @ Core ./boot.jl:489 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [12] include_string @ ./loading.jl:2856 [inlined] [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [14] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/src/compiler/interpreter.jl:1 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/src/compiler.jl:1 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/src/Enzyme.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Enzyme [7da242da-08ed-463a-9acd-ee780be4f1d9] to "/home/pkgeval/.julia/compiled/v1.13/Enzyme/jl_AFirXK" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#232 @ ./reflection.jl:1282 [inlined] [8] invokelatest_gr @ ./reflection.jl:1274 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [10] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [13] macro expansion @ ./loading.jl:2394 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [16] require @ ./loading.jl:2335 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/ext/EnzymeGPUArraysCoreExt.jl:4 [21] include(mod::Module, _path::String) @ Base ./Base.jl:309 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [26] include_string @ ./loading.jl:2856 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [28] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/ext/EnzymeGPUArraysCoreExt.jl:1 in expression starting at stdin:5 EnzymeLogExpFunctionsExt Failed to precompile EnzymeLogExpFunctionsExt [2cbbde57-e0f9-526f-9bad-0377a41e3da5] to "/home/pkgeval/.julia/compiled/v1.13/EnzymeLogExpFunctionsExt/jl_Pak542" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `verbose_stmt_info` not defined in `Compiler` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty(x::Module, f::Symbol) @ Base ./Base_compiler.jl:50 [2] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/src/compiler/interpreter.jl:269 [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [4] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/src/compiler.jl:1419 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [6] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/src/Enzyme.jl:139 [7] include(mod::Module, _path::String) @ Base ./Base.jl:309 [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [9] top-level scope @ stdin:5 [10] eval(m::Module, e::Any) @ Core ./boot.jl:489 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [12] include_string @ ./loading.jl:2856 [inlined] [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [14] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/src/compiler/interpreter.jl:1 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/src/compiler.jl:1 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/src/Enzyme.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Enzyme [7da242da-08ed-463a-9acd-ee780be4f1d9] to "/home/pkgeval/.julia/compiled/v1.13/Enzyme/jl_Wy8jiA" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#232 @ ./reflection.jl:1282 [inlined] [8] invokelatest_gr @ ./reflection.jl:1274 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [10] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [13] macro expansion @ ./loading.jl:2394 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [16] require @ ./loading.jl:2335 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/ext/EnzymeLogExpFunctionsExt.jl:4 [21] include(mod::Module, _path::String) @ Base ./Base.jl:309 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [26] include_string @ ./loading.jl:2856 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [28] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/ext/EnzymeLogExpFunctionsExt.jl:1 in expression starting at stdin:5 EnzymeChainRulesCoreExt Failed to precompile EnzymeChainRulesCoreExt [3d64210b-5959-5fb4-bce6-6715fad0aae8] to "/home/pkgeval/.julia/compiled/v1.13/EnzymeChainRulesCoreExt/jl_ii12RA" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `verbose_stmt_info` not defined in `Compiler` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty(x::Module, f::Symbol) @ Base ./Base_compiler.jl:50 [2] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/src/compiler/interpreter.jl:269 [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [4] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/src/compiler.jl:1419 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [6] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/src/Enzyme.jl:139 [7] include(mod::Module, _path::String) @ Base ./Base.jl:309 [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [9] top-level scope @ stdin:5 [10] eval(m::Module, e::Any) @ Core ./boot.jl:489 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [12] include_string @ ./loading.jl:2856 [inlined] [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [14] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/src/compiler/interpreter.jl:1 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/src/compiler.jl:1 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/src/Enzyme.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Enzyme [7da242da-08ed-463a-9acd-ee780be4f1d9] to "/home/pkgeval/.julia/compiled/v1.13/Enzyme/jl_EdgIuU" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#232 @ ./reflection.jl:1282 [inlined] [8] invokelatest_gr @ ./reflection.jl:1274 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [10] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [13] macro expansion @ ./loading.jl:2394 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [16] require @ ./loading.jl:2335 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/ext/EnzymeChainRulesCoreExt.jl:5 [21] include(mod::Module, _path::String) @ Base ./Base.jl:309 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [26] include_string @ ./loading.jl:2856 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [28] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/ext/EnzymeChainRulesCoreExt.jl:1 in expression starting at stdin:5 EnzymeExt Failed to precompile EnzymeExt [3fb0c465-29f3-5d32-ba67-396fa5e6e713] to "/home/pkgeval/.julia/compiled/v1.13/EnzymeExt/jl_utwx9d" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `verbose_stmt_info` not defined in `Compiler` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty(x::Module, f::Symbol) @ Base ./Base_compiler.jl:50 [2] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/src/compiler/interpreter.jl:269 [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [4] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/src/compiler.jl:1419 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [6] top-level scope @ ~/.julia/packages/Enzyme/MZ6Nf/src/Enzyme.jl:139 [7] include(mod::Module, _path::String) @ Base ./Base.jl:309 [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [9] top-level scope @ stdin:5 [10] eval(m::Module, e::Any) @ Core ./boot.jl:489 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [12] include_string @ ./loading.jl:2856 [inlined] [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [14] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/src/compiler/interpreter.jl:1 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/src/compiler.jl:1 in expression starting at /home/pkgeval/.julia/packages/Enzyme/MZ6Nf/src/Enzyme.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Enzyme [7da242da-08ed-463a-9acd-ee780be4f1d9] to "/home/pkgeval/.julia/compiled/v1.13/Enzyme/jl_WJwlKG" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#232 @ ./reflection.jl:1282 [inlined] [8] invokelatest_gr @ ./reflection.jl:1274 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [10] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [13] macro expansion @ ./loading.jl:2394 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [16] require @ ./loading.jl:2335 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/LaplacianExpectationMaximization/as2MD/ext/EnzymeExt.jl:3 [21] include(mod::Module, _path::String) @ Base ./Base.jl:309 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [26] include_string @ ./loading.jl:2856 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [28] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/ext/EnzymeExt.jl:1 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 2632.14s ################################################################################ # Testing # Testing LaplacianExpectationMaximization Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_fsjpxs/Project.toml` [47edcb42] ↑ ADTypes v1.11.0 ⇒ v1.15.0 [4c88cf16] ↑ Aqua v0.8.9 ⇒ v0.8.13 [b0b7db55] ↑ ComponentArrays v0.15.19 ⇒ v0.15.28 [31c24e10] ↑ Distributions v0.25.113 ⇒ v0.25.120 [7da242da] ↑ Enzyme v0.13.16 ⇒ v0.13.51 [6a86dc24] ↑ FiniteDiff v2.26.2 ⇒ v2.27.0 [c3a54625] ↑ JET v0.9.12 ⇒ v0.10.6 [033835bb] ↑ JLD2 v0.5.10 ⇒ v0.5.14 [610349f3] + LaplacianExpectationMaximization v0.1.0 [2ab3a3ac] ↑ LogExpFunctions v0.3.28 ⇒ v0.3.29 [76087f3c] ↑ NLopt v1.1.1 ⇒ v1.1.4 [3bd65402] ↑ Optimisers v0.4.1 ⇒ v0.4.6 [7f7a1694] ↑ Optimization v4.0.5 ⇒ v4.4.0 [36348300] ↑ OptimizationOptimJL v0.4.1 ⇒ v0.4.3 Updating `/tmp/jl_fsjpxs/Manifest.toml` [47edcb42] ↑ ADTypes v1.11.0 ⇒ v1.15.0 [7d9f7c33] ↑ Accessors v0.1.38 ⇒ v0.1.42 [79e6a3ab] ↑ Adapt v4.1.1 ⇒ v4.3.0 [4c88cf16] ↑ Aqua v0.8.9 ⇒ v0.8.13 [4fba245c] ↑ ArrayInterface v7.17.1 ⇒ v7.19.0 [d360d2e6] ↑ ChainRulesCore v1.25.0 ⇒ v1.25.2 [da1fd8a2] ↑ CodeTracking v1.3.6 ⇒ v1.3.9 [807dbc54] + Compiler v0.1.1 [b0b7db55] ↑ ComponentArrays v0.15.19 ⇒ v0.15.28 [187b0558] ↑ ConstructionBase v1.5.8 ⇒ v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [864edb3b] ↑ DataStructures v0.18.20 ⇒ v0.18.22 [a0c0ee7d] ↑ DifferentiationInterface v0.6.23 ⇒ v0.7.1 [31c24e10] ↑ Distributions v0.25.113 ⇒ v0.25.120 [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5 [4e289a0a] ↑ EnumX v1.0.4 ⇒ v1.0.5 [7da242da] ↑ Enzyme v0.13.16 ⇒ v0.13.51 [f151be2c] ↑ EnzymeCore v0.8.6 ⇒ v0.8.12 [6b7a57c9] - Expronicon v0.8.5 [55351af7] + ExproniconLite v0.10.14 [5789e2e9] ↑ FileIO v1.16.6 ⇒ v1.17.0 [6a86dc24] ↑ FiniteDiff v2.26.2 ⇒ v2.27.0 [d9f16b24] ↑ Functors v0.5.1 ⇒ v0.5.2 [61eb1bfa] ↑ GPUCompiler v1.0.1 ⇒ v1.5.3 [34004b35] ↑ HypergeometricFunctions v0.3.25 ⇒ v0.3.28 [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.4 [c3a54625] ↑ JET v0.9.12 ⇒ v0.10.6 [033835bb] ↑ JLD2 v0.5.10 ⇒ v0.5.14 [692b3bcd] ↑ JLLWrappers v1.6.1 ⇒ v1.7.0 [ae98c720] + Jieko v0.2.1 [aa1ae85d] ↑ JuliaInterpreter v0.9.38 ⇒ v0.10.3 [70703baa] + JuliaSyntax v1.0.2 [929cbde3] ↑ LLVM v9.1.3 ⇒ v9.4.1 [b964fa9f] + LaTeXStrings v1.4.0 [610349f3] + LaplacianExpectationMaximization v0.1.0 [d3d80556] ↑ LineSearches v7.3.0 ⇒ v7.4.0 [2ab3a3ac] ↑ LogExpFunctions v0.3.28 ⇒ v0.3.29 [6f1432cf] ↑ LoweredCodeUtils v3.1.0 ⇒ v3.3.0 [d8e11817] - MLStyle v0.4.17 [1914dd2f] ↑ MacroTools v0.5.13 ⇒ v0.5.16 [2e0e35c7] + Moshi v0.3.5 [d41bc354] ↑ NLSolversBase v7.8.3 ⇒ v7.10.0 [76087f3c] ↑ NLopt v1.1.1 ⇒ v1.1.4 [77ba4419] ↑ NaNMath v1.0.2 ⇒ v1.1.3 [d8793406] ↑ ObjectFile v0.4.2 ⇒ v0.4.4 [429524aa] ↑ Optim v1.10.0 ⇒ v1.13.2 [3bd65402] ↑ Optimisers v0.4.1 ⇒ v0.4.6 [7f7a1694] ↑ Optimization v4.0.5 ⇒ v4.4.0 [bca83a33] ↑ OptimizationBase v2.4.0 ⇒ v2.8.0 [65fa8838] + OptimizationCallbacks v0.1.0 [36348300] ↑ OptimizationOptimJL v0.4.1 ⇒ v0.4.3 [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.1 [90014a1f] ↑ PDMats v0.11.31 ⇒ v0.11.35 [aea7be01] ↑ PrecompileTools v1.2.1 ⇒ v1.3.2 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] ↑ ProgressMeter v1.10.2 ⇒ v1.10.4 [43287f4e] ↑ PtrArrays v1.2.1 ⇒ v1.3.0 [1fd47b50] ↑ QuadGK v2.11.1 ⇒ v2.11.2 [731186ca] ↑ RecursiveArrayTools v3.27.4 ⇒ v3.33.0 [ae029012] ↑ Requires v1.3.0 ⇒ v1.3.1 [7e49a35a] ↑ RuntimeGeneratedFunctions v0.5.13 ⇒ v0.5.15 [0bca4576] ↑ SciMLBase v2.64.0 ⇒ v2.102.0 [c0aeaf25] ↑ SciMLOperators v0.3.12 ⇒ v1.3.1 [53ae85a6] ↑ SciMLStructures v1.6.1 ⇒ v1.7.0 [6c6a2e73] ↑ Scratch v1.2.1 ⇒ v1.3.0 [efcf1570] ↑ Setfield v1.1.1 ⇒ v1.1.2 [9f842d2f] ↑ SparseConnectivityTracer v0.6.9 ⇒ v0.6.21 [0a514795] ↑ SparseMatrixColorings v0.4.10 ⇒ v0.4.21 [276daf66] ↑ SpecialFunctions v2.4.0 ⇒ v2.5.1 [aedffcd0] ↑ Static v1.1.1 ⇒ v1.2.0 [82ae8749] ↑ StatsAPI v1.7.0 ⇒ v1.7.1 [2913bbd2] ↑ StatsBase v0.34.3 ⇒ v0.34.5 [4c63d2b9] ↑ StatsFuns v1.3.2 ⇒ v1.5.0 [892a3eda] + StringManipulation v0.4.1 [2efcf032] ↑ SymbolicIndexingInterface v0.3.35 ⇒ v0.3.41 [bd369af6] ↑ Tables v1.12.0 ⇒ v1.12.1 [a759f4b9] - TimerOutputs v0.5.25 [e689c965] + Tracy v0.1.4 [7cc45869] ↑ Enzyme_jll v0.0.165+0 ⇒ v0.0.183+0 [dad2f222] ↑ LLVMExtra_jll v0.0.34+0 ⇒ v0.0.37+2 [ad6e5548] + LibTracyClient_jll v0.9.1+6 [c8ffd9c3] - MbedTLS_jll v2.28.6+0 [079eb43e] ↑ NLopt_jll v2.8.0+0 ⇒ v2.10.0+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [37e2e46d] ↑ LinearAlgebra v1.11.0 ⇒ v1.12.0 [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0 [44cfe95a] ↑ Pkg v1.11.0 ⇒ v1.13.0 [2f01184e] ↑ SparseArrays v1.11.0 ⇒ v1.12.0 [f489334b] + StyledStrings v1.11.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.3.0+1 [deac9b47] ↑ LibCURL_jll v8.6.0+0 ⇒ v8.14.1+1 [e37daf67] ↑ LibGit2_jll v1.7.2+0 ⇒ v1.9.1+0 [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1 [14a3606d] ↑ MozillaCACerts_jll v2023.12.12 ⇒ v2025.5.20 [4536629a] ↑ OpenBLAS_jll v0.3.27+1 ⇒ v0.3.29+0 [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.0+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] ↑ SuiteSparse_jll v7.7.0+0 ⇒ v7.10.1+0 [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+2 [8e850b90] ↑ libblastrampoline_jll v5.11.0+0 ⇒ v5.13.1+0 [8e850ede] ↑ nghttp2_jll v1.59.0+0 ⇒ v1.65.0+0 [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.5.0+2 Test Successfully re-resolved Status `/tmp/jl_fsjpxs/Project.toml` [47edcb42] ADTypes v1.15.0 [4c88cf16] Aqua v0.8.13 [b0b7db55] ComponentArrays v0.15.28 [2569d6c7] ConcreteStructs v0.2.3 [31c24e10] Distributions v0.25.120 [7da242da] Enzyme v0.13.51 [6a86dc24] FiniteDiff v2.27.0 ⌅ [f6369f11] ForwardDiff v0.10.38 [c3a54625] JET v0.10.6 [033835bb] JLD2 v0.5.14 [610349f3] LaplacianExpectationMaximization v0.1.0 [2ab3a3ac] LogExpFunctions v0.3.29 [76087f3c] NLopt v1.1.4 [3bd65402] Optimisers v0.4.6 [7f7a1694] Optimization v4.4.0 [36348300] OptimizationOptimJL v0.4.3 [10745b16] Statistics v1.11.1 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_fsjpxs/Manifest.toml` [47edcb42] ADTypes v1.15.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.13 [4fba245c] ArrayInterface v7.19.0 [fa961155] CEnum v0.5.0 [d360d2e6] ChainRulesCore v1.25.2 [da1fd8a2] CodeTracking v1.3.9 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [807dbc54] Compiler v0.1.1 [b0b7db55] ComponentArrays v0.15.28 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.1 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [7da242da] Enzyme v0.13.51 [f151be2c] EnzymeCore v0.8.12 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [9aa1b823] FastClosures v0.3.2 [5789e2e9] FileIO v1.17.0 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 ⌅ [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [61eb1bfa] GPUCompiler v1.5.3 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [c3a54625] JET v0.10.6 [033835bb] JLD2 v0.5.14 [692b3bcd] JLLWrappers v1.7.0 [ae98c720] Jieko v0.2.1 [aa1ae85d] JuliaInterpreter v0.10.3 [70703baa] JuliaSyntax v1.0.2 [5be7bae1] LBFGSB v0.4.1 [929cbde3] LLVM v9.4.1 [b964fa9f] LaTeXStrings v1.4.0 [610349f3] LaplacianExpectationMaximization v0.1.0 [1d6d02ad] LeftChildRightSiblingTrees v0.2.0 [d3d80556] LineSearches v7.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [6f1432cf] LoweredCodeUtils v3.3.0 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.5 [d41bc354] NLSolversBase v7.10.0 [76087f3c] NLopt v1.1.4 [77ba4419] NaNMath v1.1.3 [d8793406] ObjectFile v0.4.4 [429524aa] Optim v1.13.2 [3bd65402] Optimisers v0.4.6 [7f7a1694] Optimization v4.4.0 [bca83a33] OptimizationBase v2.8.0 [65fa8838] OptimizationCallbacks v0.1.0 [36348300] OptimizationOptimJL v0.4.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [33c8b6b6] ProgressLogging v0.1.4 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.33.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.15 [0bca4576] SciMLBase v2.102.0 [c0aeaf25] SciMLOperators v1.3.1 [53ae85a6] SciMLStructures v1.7.0 [6c6a2e73] Scratch v1.3.0 [efcf1570] Setfield v1.1.2 [a2af1166] SortingAlgorithms v1.2.1 [9f842d2f] SparseConnectivityTracer v0.6.21 [0a514795] SparseMatrixColorings v0.4.21 [276daf66] SpecialFunctions v2.5.1 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [892a3eda] StringManipulation v0.4.1 [53d494c1] StructIO v0.3.1 [2efcf032] SymbolicIndexingInterface v0.3.41 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [5d786b92] TerminalLoggers v0.1.7 [e689c965] Tracy v0.1.4 [3bb67fe8] TranscodingStreams v0.11.3 [3a884ed6] UnPack v1.0.2 [7cc45869] Enzyme_jll v0.0.183+0 [dad2f222] LLVMExtra_jll v0.0.37+2 [81d17ec3] L_BFGS_B_jll v3.0.1+0 [ad6e5548] LibTracyClient_jll v0.9.1+6 [079eb43e] NLopt_jll v2.10.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.0+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 278 running 1 of 1 signal (10): User defined signal 1 maybe_record_alloc_to_profile at /source/src/gc-alloc-profiler.h:42 [inlined] jl_gc_alloc_ at /source/src/gc-stock.c:805 jl_alloc_genericmemory_unchecked at /source/src/genericmemory.c:41 GenericMemory at ./boot.jl:588 [inlined] Array at ./boot.jl:648 [inlined] Array at ./baseext.jl:23 [inlined] #read#644 at ./iostream.jl:623 [inlined] read at ./iostream.jl:620 [inlined] srctext_files at ./loading.jl:3637 _parse_cache_header at ./loading.jl:3467 parse_cache_header at ./loading.jl:3473 sort_by at ./loading.jl:1207 Precompiling packages... _broadcast_getindex_evalf at ./broadcast.jl:701 [inlined] _broadcast_getindex at ./broadcast.jl:674 [inlined] _getindex at ./broadcast.jl:622 [inlined] getindex at ./broadcast.jl:618 [inlined] macro expansion at ./broadcast.jl:997 [inlined] macro expansion at ./simdloop.jl:77 [inlined] copyto! at ./broadcast.jl:996 [inlined] copyto! at ./broadcast.jl:949 [inlined] copy at ./broadcast.jl:921 [inlined] materialize at ./broadcast.jl:896 [inlined] find_all_in_cache_path at ./loading.jl:1227 find_all_in_cache_path at ./loading.jl:1183 [inlined] #_precompilepkgs##30 at ./precompilation.jl:905 [inlined] get! at ./dict.jl:459 _precompilepkgs at ./precompilation.jl:905 #precompilepkgs#9 at ./precompilation.jl:472 unknown function (ip: 0x7fb4056a0472) at (unknown file) _jl_invoke at /source/src/gf.c:3692 [inlined] ijl_apply_generic at /source/src/gf.c:3892 precompilepkgs at ./precompilation.jl:459 __require_prelocked at ./loading.jl:2631 _require_prelocked at ./loading.jl:2466 _require_prelocked at ./loading.jl:2460 [inlined] run_extension_callbacks at ./loading.jl:1580 run_extension_callbacks at ./loading.jl:1617 run_package_callbacks at ./loading.jl:1433 #_require_search_from_serialized#884 at ./loading.jl:2107 _require_search_from_serialized at ./loading.jl:1982 jfptr__require_search_from_serialized_71859.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3692 [inlined] ijl_apply_generic at /source/src/gf.c:3892 __require_prelocked at ./loading.jl:2600 _require_prelocked at ./loading.jl:2466 macro expansion at ./loading.jl:2394 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2359 jfptr___require_59221.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3692 [inlined] ijl_apply_generic at /source/src/gf.c:3892 jl_apply at /source/src/julia.h:2343 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:896 require at ./loading.jl:2335 [inlined] eval_import_path at ./module.jl:36 [inlined] eval_import_path_all at ./module.jl:60 _eval_using at ./module.jl:137 jfptr__eval_using_61866.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3692 [inlined] ijl_apply_generic at /source/src/gf.c:3892 jl_apply at /source/src/julia.h:2343 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3692 [inlined] ijl_apply_generic at /source/src/gf.c:3892 _include at ./loading.jl:2906 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_45279.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3692 [inlined] ijl_apply_generic at /source/src/gf.c:3892 jl_apply at /source/src/julia.h:2343 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 exec_options at ./client.jl:290 _start at ./client.jl:557 jfptr__start_63934.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3692 [inlined] ijl_apply_generic at /source/src/gf.c:3892 jl_apply at /source/src/julia.h:2343 [inlined] true_main at /source/src/jlapi.c:964 jl_repl_entrypoint at /source/src/jlapi.c:1132 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7fb406a81249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1213 wait_forever at ./task.jl:1150 jfptr_wait_forever_66361.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3692 [inlined] ijl_apply_generic at /source/src/gf.c:3892 jl_apply at /source/src/julia.h:2343 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000724fe7df3d00 Total snapshots: 187. Utilization: 0% ╎187 @Base/task.jl:1150 wait_forever() 186╎ 187 @Base/task.jl:1213 wait() [278] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/test/runtests.jl:5 _ZN4llvm11IntervalMapINS_9SlotIndexEjLj9ENS_15IntervalMapInfoIS1_EEE8iterator10treeInsertES1_S1_j at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11IntervalMapINS_9SlotIndexEjLj9ENS_15IntervalMapInfoIS1_EEE6insertES1_S1_j at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11SplitEditor7useIntvENS_9SlotIndexES1_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) PkgEval terminated after 2728.32s: test duration exceeded the time limit