Package evaluation of Stheno on Julia 1.13.0-DEV.771 (d887bd21ab*) started at 2025-06-22T17:30:48.578 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.42s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.1 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.25.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.16s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 51.57s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_xUVR2G/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.32 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_xUVR2G/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.1 [a9b6321e] Atomix v1.1.1 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.25.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.2 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.35 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.3.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.37+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 8900.0 ms ✓ Documenter 1 dependency successfully precompiled in 9 seconds. 28 already precompiled. Precompiling packages... 2302.9 ms ✓ FiniteDifferences 1 dependency successfully precompiled in 2 seconds. 18 already precompiled. Precompiling packages... 8549.1 ms ✓ ForwardDiff 25735.3 ms ✓ GPUArrays 4067.2 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 64212.6 ms ✓ Zygote 4 dependencies successfully precompiled in 104 seconds. 100 already precompiled. Precompiling packages... 7580.0 ms ✓ KernelAbstractions 3383.2 ms ✓ KernelAbstractions → SparseArraysExt 2837.9 ms ✓ KernelAbstractions → LinearAlgebraExt 3064.5 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 15835.0 ms ✓ GPUArrays 9802.0 ms ✓ Zygote → ZygoteDistancesExt 6 dependencies successfully precompiled in 43 seconds. 103 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#278` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 19m22.5s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1179s / 98.5% 29.8GiB / 99.3% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 737s 63.5% 737s 20.7GiB 69.9% 20.7GiB addition 1 417s 35.9% 417s 11.9GiB 40.3% 11.9GiB Standardised Tests (correlated sum) 1 235s 20.2% 235s 6.47GiB 21.9% 6.47GiB adj_ad 9 33.0s 2.8% 3.67s 1.04GiB 3.5% 118MiB adj_fd 9 8.88s 0.8% 987ms 330MiB 1.1% 36.6MiB Standardised Tests (independent sum) 1 135s 11.6% 135s 5.13GiB 17.3% 5.13GiB adj_ad 9 26.5s 2.3% 2.94s 1.26GiB 4.3% 143MiB adj_fd 9 10.4s 0.9% 1.16s 315MiB 1.0% 35.0MiB Correlated GPs 1 44.5s 3.8% 44.5s 296MiB 1.0% 296MiB Consistency Tests 1 18.3s 1.6% 18.3s 129MiB 0.4% 129MiB Verify mean / kernel numerically 1 2.15s 0.2% 2.15s 43.0MiB 0.1% 43.0MiB Consistency Tests 1 1.23s 0.1% 1.23s 14.7MiB 0.0% 14.7MiB product 1 152s 13.0% 152s 4.06GiB 13.7% 4.06GiB multiply by function 1 88.6s 7.6% 88.6s 2.17GiB 7.3% 2.17GiB Diff Tests 1 49.2s 4.2% 49.2s 1.62GiB 5.5% 1.62GiB adj_ad 9 19.7s 1.7% 2.19s 892MiB 2.9% 99.1MiB adj_fd 9 6.22s 0.5% 691ms 115MiB 0.4% 12.8MiB Consistency Tests 1 6.25s 0.5% 6.25s 110MiB 0.4% 110MiB multiply by constant 1 63.0s 5.4% 63.0s 1.89GiB 6.4% 1.89GiB Diff Tests 1 47.7s 4.1% 47.7s 1.84GiB 6.2% 1.84GiB adj_ad 9 15.4s 1.3% 1.71s 814MiB 2.7% 90.5MiB adj_fd 9 10.3s 0.9% 1.14s 309MiB 1.0% 34.3MiB Consistency Tests 1 4.02s 0.3% 4.02s 20.3MiB 0.1% 20.3MiB GP mul errors 1 10.9ms 0.0% 10.9ms 40.0KiB 0.0% 40.0KiB compose 1 79.1s 6.8% 79.1s 2.41GiB 8.2% 2.41GiB general 1 48.8s 4.2% 48.8s 1.53GiB 5.2% 1.53GiB Diff Tests 1 42.6s 3.7% 42.6s 1.48GiB 5.0% 1.48GiB adj_ad 9 13.1s 1.1% 1.45s 720MiB 2.4% 80.0MiB adj_fd 9 5.14s 0.4% 571ms 113MiB 0.4% 12.5MiB Consistency Tests 1 4.73s 0.4% 4.73s 39.6MiB 0.1% 39.6MiB Stretch 1 24.9s 2.1% 24.9s 791MiB 2.6% 791MiB scalar stretch 1 24.3s 2.1% 24.3s 778MiB 2.6% 778MiB scalar input 1 23.7s 2.0% 23.7s 774MiB 2.6% 774MiB adj_fd 9 7.74s 0.7% 860ms 296MiB 1.0% 32.9MiB adj_ad 9 3.41s 0.3% 379ms 144MiB 0.5% 16.0MiB vector input 1 574ms 0.0% 574ms 3.36MiB 0.0% 3.36MiB Vector stretch 1 487ms 0.0% 487ms 9.91MiB 0.0% 9.91MiB Matrix stretch 1 107ms 0.0% 107ms 3.06MiB 0.0% 3.06MiB Shift 1 2.90s 0.2% 2.90s 41.5MiB 0.1% 41.5MiB Shift{Vector{Float64}} 1 1.61s 0.1% 1.61s 15.0MiB 0.0% 15.0MiB Shift{Float64} 1 1.29s 0.1% 1.29s 26.5MiB 0.1% 26.5MiB Select 1 1.40s 0.1% 1.40s 33.4MiB 0.1% 33.4MiB evaluation 1 580ms 0.0% 580ms 21.3MiB 0.1% 21.3MiB idx isa Vector 1 475ms 0.0% 475ms 8.07MiB 0.0% 8.07MiB idx isa Integer 1 341ms 0.0% 341ms 4.07MiB 0.0% 4.07MiB Periodic 1 1.11s 0.1% 1.11s 34.5MiB 0.1% 34.5MiB cross 1 30.4s 2.6% 30.4s 1.39GiB 4.7% 1.39GiB block arrays 1 16.2s 1.4% 16.2s 782MiB 2.6% 782MiB Stheno._collect ∘ _mortar 1 14.3s 1.2% 14.3s 695MiB 2.3% 695MiB BlockMatrix 1 7.69s 0.7% 7.69s 385MiB 1.3% 385MiB adj_fd 1 968ms 0.1% 968ms 112MiB 0.4% 112MiB adj_ad 1 57.6ms 0.0% 57.6ms 2.40MiB 0.0% 2.40MiB BlockVector 1 6.63s 0.6% 6.63s 310MiB 1.0% 310MiB adj_fd 1 803ms 0.1% 803ms 13.2MiB 0.0% 13.2MiB adj_ad 1 243ms 0.0% 243ms 16.1MiB 0.1% 16.1MiB fdm stuff 1 1.92s 0.2% 1.92s 86.7MiB 0.3% 86.7MiB Correctness tests 1 7.91s 0.7% 7.91s 395MiB 1.3% 395MiB Standardised Tests 1 6.25s 0.5% 6.25s 243MiB 0.8% 243MiB gp 1 197s 16.9% 197s 4.55GiB 15.4% 4.55GiB sparse gp 1 21.3s 1.8% 21.3s 384MiB 1.3% 384MiB SparseFiniteGP inference 1 16.2s 1.4% 16.2s 267MiB 0.9% 267MiB SparseFiniteGP methods 1 4.72s 0.4% 4.72s 113MiB 0.4% 113MiB SparseFiniteGP Constructors 1 384ms 0.0% 384ms 4.10MiB 0.0% 4.10MiB adj_ad 2 20.6s 1.8% 10.3s 856MiB 2.8% 428MiB gp 1 15.4s 1.3% 15.4s 267MiB 0.9% 267MiB GP 1 15.1s 1.3% 15.1s 264MiB 0.9% 264MiB independent GPs 1 303ms 0.0% 303ms 2.72MiB 0.0% 2.72MiB wrapped AbstractGP 1 12.1ms 0.0% 12.1ms 290KiB 0.0% 290KiB adj_fd 2 2.46s 0.2% 1.23s 43.4MiB 0.1% 21.7MiB derived_gp 1 184μs 0.0% 184μs 1.59KiB 0.0% 1.59KiB gaussian_process_probabilistic_programme 1 146s 12.6% 146s 2.31GiB 7.8% 2.31GiB Zygote 1 28.3s 2.4% 28.3s 0.99GiB 3.3% 0.99GiB nested gppp 1 16.4s 1.4% 16.4s 93.3MiB 0.3% 93.3MiB External Consistency 1 14.3s 1.2% 14.3s 100MiB 0.3% 100MiB split 1 621ms 0.1% 621ms 12.3MiB 0.0% 12.3MiB gppp macro 1 54.0ms 0.0% 54.0ms 607KiB 0.0% 607KiB doctests 1 74.7s 6.4% 74.7s 1.77GiB 6.0% 1.77GiB BlockData 1 6.98s 0.6% 6.98s 269MiB 0.9% 269MiB vcat(::GPPPInput...) 1 2.24s 0.2% 2.24s 105MiB 0.3% 105MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1356.13s PkgEval succeeded after 1438.67s