Package evaluation of Stheno on Julia 1.13.0-DEV.759 (3bb7518b04*) started at 2025-06-19T17:27:12.484 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.42s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.1 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.25.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.19s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 50.15s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_MJNf5m/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.32 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_MJNf5m/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.1 [a9b6321e] Atomix v1.1.1 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.25.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.2 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.35 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.3.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.37+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 11959.4 ms ✓ Stheno 1 dependency successfully precompiled in 14 seconds. 74 already precompiled. Precompiling packages... 4739.7 ms ✓ FiniteDifferences 1 dependency successfully precompiled in 5 seconds. 18 already precompiled. Precompiling packages... 2063.2 ms ✓ StructArrays → StructArraysStaticArraysExt 12912.7 ms ✓ ChainRules 9018.2 ms ✓ ForwardDiff 15040.1 ms ✓ GPUArrays 2977.5 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 3993.9 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 64736.5 ms ✓ Zygote 7 dependencies successfully precompiled in 112 seconds. 97 already precompiled. Precompiling packages... 8040.8 ms ✓ KernelAbstractions 3339.3 ms ✓ KernelAbstractions → SparseArraysExt 2806.3 ms ✓ KernelAbstractions → LinearAlgebraExt 3022.4 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 16462.6 ms ✓ GPUArrays 8615.3 ms ✓ Zygote → ZygoteDistancesExt 6 dependencies successfully precompiled in 43 seconds. 103 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#278` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 19m22.1s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1179s / 98.5% 29.9GiB / 99.3% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 742s 63.9% 742s 20.8GiB 69.9% 20.8GiB addition 1 422s 36.3% 422s 11.9GiB 40.2% 11.9GiB Standardised Tests (correlated sum) 1 235s 20.2% 235s 6.47GiB 21.8% 6.47GiB adj_ad 9 32.5s 2.8% 3.61s 1.04GiB 3.5% 119MiB adj_fd 9 8.83s 0.8% 981ms 331MiB 1.1% 36.8MiB Standardised Tests (independent sum) 1 139s 12.0% 139s 5.14GiB 17.3% 5.14GiB adj_ad 9 28.0s 2.4% 3.12s 1.26GiB 4.3% 144MiB adj_fd 9 10.7s 0.9% 1.19s 316MiB 1.0% 35.1MiB Correlated GPs 1 44.7s 3.8% 44.7s 297MiB 1.0% 297MiB Consistency Tests 1 18.2s 1.6% 18.2s 130MiB 0.4% 130MiB Verify mean / kernel numerically 1 3.02s 0.3% 3.02s 43.3MiB 0.1% 43.3MiB Consistency Tests 1 1.79s 0.2% 1.79s 14.8MiB 0.0% 14.8MiB product 1 150s 12.9% 150s 4.08GiB 13.7% 4.08GiB multiply by function 1 88.6s 7.6% 88.6s 2.18GiB 7.3% 2.18GiB Diff Tests 1 49.7s 4.3% 49.7s 1.63GiB 5.5% 1.63GiB adj_ad 9 19.8s 1.7% 2.20s 897MiB 2.9% 100MiB adj_fd 9 5.73s 0.5% 637ms 116MiB 0.4% 12.9MiB Consistency Tests 1 6.00s 0.5% 6.00s 110MiB 0.4% 110MiB multiply by constant 1 61.8s 5.3% 61.8s 1.90GiB 6.4% 1.90GiB Diff Tests 1 46.7s 4.0% 46.7s 1.85GiB 6.2% 1.85GiB adj_ad 9 15.8s 1.4% 1.76s 820MiB 2.7% 91.1MiB adj_fd 9 9.75s 0.8% 1.08s 310MiB 1.0% 34.4MiB Consistency Tests 1 3.75s 0.3% 3.75s 20.4MiB 0.1% 20.4MiB GP mul errors 1 11.6ms 0.0% 11.6ms 40.4KiB 0.0% 40.4KiB compose 1 79.7s 6.9% 79.7s 2.43GiB 8.2% 2.43GiB general 1 47.7s 4.1% 47.7s 1.54GiB 5.2% 1.54GiB Diff Tests 1 42.1s 3.6% 42.1s 1.49GiB 5.0% 1.49GiB adj_ad 9 13.4s 1.2% 1.49s 725MiB 2.4% 80.6MiB adj_fd 9 5.22s 0.4% 580ms 114MiB 0.4% 12.6MiB Consistency Tests 1 4.34s 0.4% 4.34s 39.9MiB 0.1% 39.9MiB Stretch 1 26.3s 2.3% 26.3s 796MiB 2.6% 796MiB scalar stretch 1 25.6s 2.2% 25.6s 783MiB 2.6% 783MiB scalar input 1 24.8s 2.1% 24.8s 779MiB 2.6% 779MiB adj_fd 9 8.56s 0.7% 952ms 297MiB 1.0% 33.1MiB adj_ad 9 3.77s 0.3% 419ms 145MiB 0.5% 16.1MiB vector input 1 762ms 0.1% 762ms 3.38MiB 0.0% 3.38MiB Vector stretch 1 593ms 0.1% 593ms 10.0MiB 0.0% 10.0MiB Matrix stretch 1 131ms 0.0% 131ms 3.08MiB 0.0% 3.08MiB Shift 1 2.95s 0.3% 2.95s 41.7MiB 0.1% 41.7MiB Shift{Vector{Float64}} 1 1.62s 0.1% 1.62s 15.0MiB 0.0% 15.0MiB Shift{Float64} 1 1.33s 0.1% 1.33s 26.7MiB 0.1% 26.7MiB Select 1 1.50s 0.1% 1.50s 33.5MiB 0.1% 33.5MiB evaluation 1 671ms 0.1% 671ms 21.3MiB 0.1% 21.3MiB idx isa Vector 1 485ms 0.0% 485ms 8.03MiB 0.0% 8.03MiB idx isa Integer 1 342ms 0.0% 342ms 4.10MiB 0.0% 4.10MiB Periodic 1 1.12s 0.1% 1.12s 34.7MiB 0.1% 34.7MiB cross 1 31.3s 2.7% 31.3s 1.41GiB 4.7% 1.41GiB block arrays 1 16.6s 1.4% 16.6s 802MiB 2.6% 802MiB Stheno._collect ∘ _mortar 1 14.5s 1.2% 14.5s 699MiB 2.3% 699MiB BlockMatrix 1 7.65s 0.7% 7.65s 387MiB 1.3% 387MiB adj_fd 1 1.04s 0.1% 1.04s 112MiB 0.4% 112MiB adj_ad 1 55.2ms 0.0% 55.2ms 2.42MiB 0.0% 2.42MiB BlockVector 1 6.81s 0.6% 6.81s 312MiB 1.0% 312MiB adj_fd 1 824ms 0.1% 824ms 13.3MiB 0.0% 13.3MiB adj_ad 1 217ms 0.0% 217ms 16.2MiB 0.1% 16.2MiB fdm stuff 1 2.19s 0.2% 2.19s 103MiB 0.3% 103MiB Correctness tests 1 8.20s 0.7% 8.20s 398MiB 1.3% 398MiB Standardised Tests 1 6.41s 0.6% 6.41s 245MiB 0.8% 245MiB gp 1 203s 17.5% 203s 4.58GiB 15.4% 4.58GiB sparse gp 1 21.7s 1.9% 21.7s 387MiB 1.3% 387MiB SparseFiniteGP inference 1 16.2s 1.4% 16.2s 269MiB 0.9% 269MiB SparseFiniteGP methods 1 4.99s 0.4% 4.99s 113MiB 0.4% 113MiB SparseFiniteGP Constructors 1 392ms 0.0% 392ms 4.13MiB 0.0% 4.13MiB adj_ad 2 21.6s 1.9% 10.8s 857MiB 2.8% 429MiB gp 1 16.2s 1.4% 16.2s 268MiB 0.9% 268MiB GP 1 15.9s 1.4% 15.9s 265MiB 0.9% 265MiB independent GPs 1 322ms 0.0% 322ms 2.73MiB 0.0% 2.73MiB wrapped AbstractGP 1 12.8ms 0.0% 12.8ms 291KiB 0.0% 291KiB adj_fd 2 2.70s 0.2% 1.35s 43.6MiB 0.1% 21.8MiB derived_gp 1 154μs 0.0% 154μs 1.59KiB 0.0% 1.59KiB gaussian_process_probabilistic_programme 1 138s 11.9% 138s 2.33GiB 7.8% 2.33GiB Zygote 1 26.3s 2.3% 26.3s 0.99GiB 3.3% 0.99GiB nested gppp 1 16.1s 1.4% 16.1s 93.8MiB 0.3% 93.8MiB External Consistency 1 13.3s 1.1% 13.3s 100MiB 0.3% 100MiB split 1 608ms 0.1% 608ms 12.3MiB 0.0% 12.3MiB gppp macro 1 56.2ms 0.0% 56.2ms 579KiB 0.0% 579KiB doctests 1 71.0s 6.1% 71.0s 1.77GiB 6.0% 1.77GiB BlockData 1 7.27s 0.6% 7.27s 270MiB 0.9% 270MiB vcat(::GPPPInput...) 1 2.33s 0.2% 2.33s 105MiB 0.3% 105MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1369.98s PkgEval succeeded after 1450.65s