Package evaluation of Stheno on Julia 1.13.0-DEV.745 (a23ce4bcbb*) started at 2025-06-15T17:37:43.053 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.34s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.1 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.25.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.13s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 31.17s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_p80MsV/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.32 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_p80MsV/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.1 [a9b6321e] Atomix v1.1.1 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.25.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.2 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.14 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.35 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.3.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.36+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 7176.3 ms ✓ Stheno 1 dependency successfully precompiled in 9 seconds. 74 already precompiled. Precompiling packages... 4285.3 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 62619.5 ms ✓ Zygote 2 dependencies successfully precompiled in 68 seconds. 102 already precompiled. Precompiling packages... 9831.3 ms ✓ Zygote → ZygoteDistancesExt 1 dependency successfully precompiled in 11 seconds. 108 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#278` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 19m38.9s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1195s / 98.6% 29.7GiB / 99.3% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 748s 63.5% 748s 20.6GiB 70.0% 20.6GiB addition 1 425s 36.1% 425s 11.9GiB 40.4% 11.9GiB Standardised Tests (correlated sum) 1 240s 20.4% 240s 6.46GiB 21.9% 6.46GiB adj_ad 9 33.4s 2.8% 3.71s 1.03GiB 3.5% 117MiB adj_fd 9 8.97s 0.8% 997ms 329MiB 1.1% 36.6MiB Standardised Tests (independent sum) 1 138s 11.7% 138s 5.10GiB 17.3% 5.10GiB adj_ad 9 26.4s 2.2% 2.94s 1.25GiB 4.2% 142MiB adj_fd 9 10.7s 0.9% 1.19s 314MiB 1.0% 34.9MiB Correlated GPs 1 43.8s 3.7% 43.8s 296MiB 1.0% 296MiB Consistency Tests 1 17.9s 1.5% 17.9s 129MiB 0.4% 129MiB Verify mean / kernel numerically 1 2.80s 0.2% 2.80s 43.2MiB 0.1% 43.2MiB Consistency Tests 1 1.64s 0.1% 1.64s 14.8MiB 0.0% 14.8MiB product 1 151s 12.8% 151s 4.05GiB 13.7% 4.05GiB multiply by function 1 93.3s 7.9% 93.3s 2.16GiB 7.3% 2.16GiB Diff Tests 1 51.6s 4.4% 51.6s 1.62GiB 5.5% 1.62GiB adj_ad 9 20.4s 1.7% 2.27s 885MiB 2.9% 98.4MiB adj_fd 9 5.96s 0.5% 662ms 115MiB 0.4% 12.8MiB Consistency Tests 1 6.46s 0.5% 6.46s 110MiB 0.4% 110MiB multiply by constant 1 57.6s 4.9% 57.6s 1.89GiB 6.4% 1.89GiB Diff Tests 1 45.4s 3.9% 45.4s 1.83GiB 6.2% 1.83GiB adj_ad 9 15.8s 1.3% 1.76s 808MiB 2.7% 89.7MiB adj_fd 9 10.1s 0.9% 1.12s 308MiB 1.0% 34.2MiB Consistency Tests 1 2.81s 0.2% 2.81s 20.4MiB 0.1% 20.4MiB GP mul errors 1 12.4ms 0.0% 12.4ms 40.2KiB 0.0% 40.2KiB compose 1 84.0s 7.1% 84.0s 2.40GiB 8.1% 2.40GiB general 1 50.1s 4.2% 50.1s 1.53GiB 5.2% 1.53GiB Diff Tests 1 43.9s 3.7% 43.9s 1.47GiB 5.0% 1.47GiB adj_ad 9 13.8s 1.2% 1.53s 715MiB 2.4% 79.5MiB adj_fd 9 5.58s 0.5% 620ms 114MiB 0.4% 12.6MiB Consistency Tests 1 4.70s 0.4% 4.70s 39.8MiB 0.1% 39.8MiB Stretch 1 27.9s 2.4% 27.9s 781MiB 2.6% 781MiB scalar stretch 1 27.0s 2.3% 27.0s 768MiB 2.5% 768MiB scalar input 1 26.2s 2.2% 26.2s 764MiB 2.5% 764MiB adj_fd 9 8.91s 0.8% 989ms 295MiB 1.0% 32.8MiB adj_ad 9 3.81s 0.3% 423ms 142MiB 0.5% 15.8MiB vector input 1 860ms 0.1% 860ms 3.38MiB 0.0% 3.38MiB Vector stretch 1 677ms 0.1% 677ms 10.0MiB 0.0% 10.0MiB Matrix stretch 1 140ms 0.0% 140ms 3.08MiB 0.0% 3.08MiB Shift 1 3.18s 0.3% 3.18s 41.6MiB 0.1% 41.6MiB Shift{Vector{Float64}} 1 1.74s 0.1% 1.74s 15.0MiB 0.0% 15.0MiB Shift{Float64} 1 1.44s 0.1% 1.44s 26.6MiB 0.1% 26.6MiB Select 1 1.67s 0.1% 1.67s 33.2MiB 0.1% 33.2MiB evaluation 1 762ms 0.1% 762ms 21.2MiB 0.1% 21.2MiB idx isa Vector 1 528ms 0.0% 528ms 7.96MiB 0.0% 7.96MiB idx isa Integer 1 376ms 0.0% 376ms 4.08MiB 0.0% 4.08MiB Periodic 1 1.19s 0.1% 1.19s 34.6MiB 0.1% 34.6MiB cross 1 24.6s 2.1% 24.6s 1.40GiB 4.8% 1.40GiB block arrays 1 11.2s 1.0% 11.2s 795MiB 2.6% 795MiB Stheno._collect ∘ _mortar 1 9.82s 0.8% 9.82s 693MiB 2.3% 693MiB BlockMatrix 1 5.23s 0.4% 5.23s 385MiB 1.3% 385MiB adj_fd 1 734ms 0.1% 734ms 112MiB 0.4% 112MiB adj_ad 1 42.1ms 0.0% 42.1ms 2.41MiB 0.0% 2.41MiB BlockVector 1 4.59s 0.4% 4.59s 308MiB 1.0% 308MiB adj_fd 1 541ms 0.0% 541ms 13.2MiB 0.0% 13.2MiB adj_ad 1 144ms 0.0% 144ms 15.8MiB 0.1% 15.8MiB fdm stuff 1 1.43s 0.1% 1.43s 102MiB 0.3% 102MiB Correctness tests 1 7.16s 0.6% 7.16s 396MiB 1.3% 396MiB Standardised Tests 1 6.22s 0.5% 6.22s 243MiB 0.8% 243MiB gp 1 197s 16.8% 197s 4.53GiB 15.4% 4.53GiB adj_ad 2 20.0s 1.7% 10.0s 847MiB 2.8% 423MiB sparse gp 1 18.5s 1.6% 18.5s 386MiB 1.3% 386MiB SparseFiniteGP inference 1 13.3s 1.1% 13.3s 268MiB 0.9% 268MiB SparseFiniteGP methods 1 4.82s 0.4% 4.82s 113MiB 0.4% 113MiB SparseFiniteGP Constructors 1 393ms 0.0% 393ms 4.12MiB 0.0% 4.12MiB gp 1 15.7s 1.3% 15.7s 267MiB 0.9% 267MiB GP 1 15.4s 1.3% 15.4s 264MiB 0.9% 264MiB independent GPs 1 309ms 0.0% 309ms 2.72MiB 0.0% 2.72MiB wrapped AbstractGP 1 12.3ms 0.0% 12.3ms 291KiB 0.0% 291KiB adj_fd 2 2.59s 0.2% 1.30s 43.4MiB 0.1% 21.7MiB derived_gp 1 165μs 0.0% 165μs 1.59KiB 0.0% 1.59KiB gaussian_process_probabilistic_programme 1 150s 12.7% 150s 2.31GiB 7.8% 2.31GiB Zygote 1 28.7s 2.4% 28.7s 0.98GiB 3.3% 0.98GiB nested gppp 1 17.3s 1.5% 17.3s 93.8MiB 0.3% 93.8MiB External Consistency 1 14.6s 1.2% 14.6s 100MiB 0.3% 100MiB split 1 641ms 0.1% 641ms 12.1MiB 0.0% 12.1MiB gppp macro 1 58.1ms 0.0% 58.1ms 578KiB 0.0% 578KiB doctests 1 75.6s 6.4% 75.6s 1.74GiB 5.9% 1.74GiB BlockData 1 7.39s 0.6% 7.39s 267MiB 0.9% 267MiB vcat(::GPPPInput...) 1 2.34s 0.2% 2.34s 104MiB 0.3% 104MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1300.62s PkgEval succeeded after 1358.29s