Package evaluation of LaMEM on Julia 1.13.0-DEV.745 (a23ce4bcbb*) started at 2025-06-16T04:10:55.294 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 7.97s ################################################################################ # Installation # Installing LaMEM... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [2e889f3d] + LaMEM v0.4.7 Updating `~/.julia/environments/v1.13/Manifest.toml` [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.7 [7b0aa2c9] + BibTeX v0.1.0 [fa961155] + CEnum v0.5.0 ⌅ [179af706] + CFTime v0.1.4 [d360d2e6] + ChainRulesCore v1.25.1 [944b1d66] + CodecZlib v0.7.8 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [1fbeeb36] + CommonDataModel v0.3.8 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [150eb455] + CoordinateTransformations v0.6.4 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [3c3547ce] + DiskArrays v0.4.13 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [411431e0] + Extents v0.1.6 [c87230d0] + FFMPEG v0.4.2 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [f6369f11] + ForwardDiff v0.10.38 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.4.1 [e018b62d] + GeoParams v0.7.3 [0ef565a4] + Geodesy v1.1.0 [5c1252a2] + GeometryBasics v0.5.9 [3700c31b] + GeophysicalModelGenerator v0.7.14 [c27321d9] + Glob v1.3.1 [615f187c] + IfElse v0.1.1 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [7d512f48] + InternedStrings v0.7.0 ⌅ [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [033835bb] + JLD2 v0.5.13 [692b3bcd] + JLLWrappers v1.7.0 [b835a17e] + JpegTurbo v0.1.6 [49dc5b4e] + KernelDensitySJ v0.2.1 [8ac3fa9e] + LRUCache v1.6.2 [2e889f3d] + LaMEM v0.4.7 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [9c8b4983] + LightXML v0.9.1 [4345ca2d] + Loess v0.6.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [da04e1cc] + MPI v0.20.22 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [dbb5928d] + MappedArrays v0.4.2 [7269a6da] + MeshIO v0.5.3 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [46d2c3a1] + MuladdMacro v0.2.4 [85f8d34a] + NCDatasets v0.14.8 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.21 [f09324ee] + Netpbm v1.1.1 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 [bac558e1] + OrderedCollections v1.8.1 [f57f5aa1] + PNGFiles v0.4.4 [5432bcbf] + PaddedViews v0.5.12 [d96e819e] + Parameters v0.12.3 [eebad327] + PkgVersion v0.3.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [4b34888f] + QOI v1.0.1 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [dc215faf] + ReadVTK v0.2.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [f2b01f46] + Roots v2.2.7 [fdea26ae] + SIMD v3.7.1 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.4 [45858cf5] + Sixel v0.1.3 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [cae243ae] + StackViews v0.1.2 [aedffcd0] + Static v1.2.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [62fd8b95] + TensorCore v0.1.1 [731e570b] + TiffImages v0.11.4 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [967fb449] + Unidecode v1.2.0 [1986cc42] + Unitful v1.23.1 [4004b06d] + VTKBase v1.0.1 [e3aaa7dc] + WebP v0.1.3 [ea906314] + WhereTheWaterFlows v0.11.1 [efce3f68] + WoodburyMatrices v1.0.0 [64499a7a] + WriteVTK v1.21.2 ⌅ [8ce61222] + Arrow_jll v10.0.1+0 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [5ae413db] + EarCut_jll v2.2.4+0 [2e619515] + Expat_jll v2.6.5+0 ⌅ [b22a6f82] + FFMPEG_jll v4.4.4+1 [a3f928ae] + Fontconfig_jll v2.16.0+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 ⌅ [a7073274] + GDAL_jll v301.900.0+0 [d604d12d] + GEOS_jll v3.13.1+1 [78b55507] + Gettext_jll v0.21.0+0 [59f7168a] + Giflib_jll v5.2.3+0 [7746bdde] + Glib_jll v2.84.0+0 [3b182d85] + Graphite2_jll v1.3.15+0 ⌅ [0234f1f7] + HDF5_jll v1.14.3+3 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [a51ab1cf] + ICU_jll v76.2.0+0 [905a6f67] + Imath_jll v3.1.11+0 [aacddb02] + JpegTurbo_jll v3.1.1+0 [b39eb1a6] + Kerberos_krb5_jll v1.21.3+0 [c1c5ebd0] + LAME_jll v3.100.2+0 ⌅ [88015f11] + LERC_jll v3.0.0+1 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [15d6fa20] + LaMEM_jll v2.1.4+0 [08be9ffa] + LibPQ_jll v16.8.0+0 [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.0+0 ⌅ [89763e89] + Libtiff_jll v4.5.1+1 [38a345b3] + Libuuid_jll v2.41.0+0 [d3a379c0] + LittleCMS_jll v2.16.0+0 [5ced341a] + Lz4_jll v1.10.1+0 ⌅ [7cb0a576] + MPICH_jll v4.1.2+1 [f1f71cc9] + MPItrampoline_jll v5.5.3+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 ⌅ [7243133f] + NetCDF_jll v400.902.211+1 [e7412a2a] + Ogg_jll v1.3.5+1 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [18a262bb] + OpenEXR_jll v3.2.4+0 [643b3616] + OpenJpeg_jll v2.5.4+0 ⌅ [fe0851c0] + OpenMPI_jll v4.1.8+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.3.3+0 ⌅ [8fa3689e] + PETSc_jll v3.19.6+0 ⌅ [58948b4f] + PROJ_jll v901.300.0+1 ⌅ [30392449] + Pixman_jll v0.44.2+0 [aabda75e] + SCALAPACK32_jll v2.2.1+1 [76ed43ae] + SQLite_jll v3.48.0+0 ⌅ [e0b8ae26] + Thrift_jll v0.16.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.6+1 [ffd25f8a] + XZ_jll v5.8.1+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 ⌅ [28df3c45] + boost_jll v1.76.0+1 [477f73a3] + libaec_jll v1.1.3+0 [a4ae2306] + libaom_jll v3.11.0+0 [0ac62f75] + libass_jll v0.15.2+0 [f638f0a6] + libfdk_aac_jll v2.0.3+0 ⌃ [06c338fa] + libgeotiff_jll v100.701.300+0 [b53b4c65] + libpng_jll v1.6.49+0 [075b6546] + libsixel_jll v1.10.5+0 [f27f6e37] + libvorbis_jll v1.3.7+2 ⌃ [c5f90fcd] + libwebp_jll v1.4.0+0 [337d8026] + libzip_jll v1.11.3+0 [fe1e1685] + snappy_jll v1.2.3+0 ⌅ [1270edf5] + x264_jll v2021.5.5+0 ⌅ [dfaa095f] + x265_jll v3.5.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.14.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.0+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 14.25s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 1725.73s ################################################################################ # Testing # Testing LaMEM Status `/tmp/jl_qL62iM/Project.toml` ⌃ [13f3f980] CairoMakie v0.13.10 [8bb1440f] DelimitedFiles v1.9.1 [ffbed154] DocStringExtensions v0.9.5 [e018b62d] GeoParams v0.7.3 [3700c31b] GeophysicalModelGenerator v0.7.14 [c27321d9] Glob v1.3.1 ⌅ [a98d9a8b] Interpolations v0.15.1 [2e889f3d] LaMEM v0.4.7 [9c8b4983] LightXML v0.9.1 [da04e1cc] MPI v0.20.22 [3da0fdf6] MPIPreferences v0.1.11 [91a5bcdd] Plots v1.40.13 [dc215faf] ReadVTK v0.2.4 [10745b16] Statistics v1.11.1 [64499a7a] WriteVTK v1.21.2 [15d6fa20] LaMEM_jll v2.1.4+0 ⌅ [7cb0a576] MPICH_jll v4.1.2+1 [8dfed614] Test v1.11.0 Status `/tmp/jl_qL62iM/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [18cc8868] BaseDirs v1.3.0 [7b0aa2c9] BibTeX v0.1.0 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 ⌅ [179af706] CFTime v0.1.4 [96374032] CRlibm v1.0.2 [159f3aea] Cairo v1.1.1 ⌃ [13f3f980] CairoMakie v0.13.10 [d360d2e6] ChainRulesCore v1.25.1 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.1 [35d6a980] ColorSchemes v3.29.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [1fbeeb36] CommonDataModel v0.3.8 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [150eb455] CoordinateTransformations v0.6.4 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.4 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [3c3547ce] DiskArrays v0.4.13 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [429591f6] ExactPredicates v2.2.8 [460bff9d] ExceptionUnwrapping v0.1.11 [411431e0] Extents v0.1.6 [c87230d0] FFMPEG v0.4.2 [7a1cc6ca] FFTW v1.9.0 [5789e2e9] FileIO v1.17.0 ⌅ [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 ⌅ [f6369f11] ForwardDiff v0.10.38 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 ⌃ [28b8d3ca] GR v0.73.7 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.4.1 [e018b62d] GeoParams v0.7.3 [0ef565a4] Geodesy v1.1.0 [5c1252a2] GeometryBasics v0.5.9 [3700c31b] GeophysicalModelGenerator v0.7.14 [c27321d9] Glob v1.3.1 [a2bd30eb] Graphics v1.1.3 [3955a311] GridLayoutBase v0.11.1 [42e2da0e] Grisu v1.0.2 [cd3eb016] HTTP v1.10.16 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [7d512f48] InternedStrings v0.7.0 ⌅ [a98d9a8b] Interpolations v0.15.1 [d1acc4aa] IntervalArithmetic v0.22.35 [8197267c] IntervalSets v0.7.11 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.5.13 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [b835a17e] JpegTurbo v0.1.6 [5ab0869b] KernelDensity v0.6.9 [49dc5b4e] KernelDensitySJ v0.2.1 [8ac3fa9e] LRUCache v1.6.2 [2e889f3d] LaMEM v0.4.7 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.8 [8cdb02fc] LazyModules v0.3.1 [9c8b4983] LightXML v0.9.1 [4345ca2d] Loess v0.6.4 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... Info Given LaMEM was explicitly requested, output will be shown live  WARNING: Method definition piece(ReadVTK.VTKFile) in module ReadVTK at /home/pkgeval/.julia/packages/ReadVTK/tf0t4/src/ReadVTK.jl:184 overwritten in module IO_functions at /home/pkgeval/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:279. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 180180.9 ms ? LaMEM WARNING: Method definition piece(ReadVTK.VTKFile) in module ReadVTK at /home/pkgeval/.julia/packages/ReadVTK/tf0t4/src/ReadVTK.jl:184 overwritten in module IO_functions at /home/pkgeval/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:279. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: Method definition piece(ReadVTK.VTKFile) in module ReadVTK at /home/pkgeval/.julia/packages/ReadVTK/tf0t4/src/ReadVTK.jl:184 overwritten in module IO_functions at /home/pkgeval/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:279. Precompiling packages... 8166.1 ms ✓ MPItrampoline_jll 4800.7 ms ✓ OpenMPI_jll 5198.8 ms ✓ SCALAPACK32_jll 5255.0 ms ✓ PETSc_jll 5116.3 ms ✓ LaMEM_jll 5 dependencies successfully precompiled in 29 seconds. 32 already precompiled. Precompiling packages... 13560.2 ms ✓ MPI 1 dependency successfully precompiled in 14 seconds. 39 already precompiled. Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 2 Time step : 1. [Myr] Minimum time step : 0.2 [Myr] Maximum time step : 10. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 16, 16] Number of cells : 4096 Number of faces : 13056 Maximum cell aspect ratio : 2.00000 Lower coordinate bounds [bx, by, bz] : [-2., -1., -1.] Upper coordinate bounds [ex, ey, ez] : [2., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- sphere (dens) : rho = 3200. [kg/m^3] (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.0310386 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress tensor @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Preconditioner type : coupled Galerkin geometric multigrid Global coarse grid [nx,ny,nz] : [8, 8, 8] Local coarse grid [nx,ny,nz] : [8, 8, 8] Number of multigrid levels : 2 -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : multigrid Multigrid smoother levels KSP : chebyshev Multigrid smoother levels PC : sor Number of smoothening steps : 10 Coarse level KSP : preonly Coarse level PC : lu Coarse level solver package : (null) -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 3.656395025301e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 5 1 SNES Function norm 9.765816215863e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.664162 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.291310889682e-05 |Div|_2 = 2.886140529488e-04 Momentum: |mRes|_2 = 9.761550506474e-03 -------------------------------------------------------------------------- Saving output ... done (0.00363359 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 1.00000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 2.685113961409e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 15 1 SNES Function norm 4.489500644001e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.685873 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.406409583179e-06 |Div|_2 = 5.437966746000e-06 Momentum: |mRes|_2 = 4.489497350596e-03 -------------------------------------------------------------------------- Actual time step : 1.10000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.2130e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00324171 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 1.57332 (sec) -------------------------------------------------------------------------- Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 3 Time step : 1. [Myr] Minimum time step : 1e-05 [Myr] Maximum time step : 10. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 16, 16] Number of cells : 4096 Number of faces : 13056 Maximum cell aspect ratio : 2.00000 Lower coordinate bounds [bx, by, bz] : [-2., -1., -1.] Upper coordinate bounds [ex, ey, ez] : [2., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- sphere (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of velocity boxes : 1 Velocity box # : 0 Box center : 0., 0., 0. [km] Box width : 1., 1., 1. [km] X-velocity : 1. [cm/yr] Top boundary temperature : 0. [C] Bottom boundary temperature : 20. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.0316515 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Preconditioner type : coupled Galerkin geometric multigrid Global coarse grid [nx,ny,nz] : [8, 8, 8] Local coarse grid [nx,ny,nz] : [8, 8, 8] Number of multigrid levels : 2 -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : multigrid Multigrid smoother levels KSP : chebyshev Multigrid smoother levels PC : sor Number of smoothening steps : 10 Coarse level KSP : preonly Coarse level PC : lu Coarse level solver package : (null) -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 3.647420796124e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 7.297937424597e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.624321 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.461331555372e-06 |Div|_2 = 2.127815511859e-04 Momentum: |mRes|_2 = 7.294834793524e-03 -------------------------------------------------------------------------- Saving output ... done (0.00306538 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 1.00000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 5.382901817483e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 10 1 SNES Function norm 3.188552971360e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.58373 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.448585401899e-05 |Div|_2 = 1.340409029960e-03 Momentum: |mRes|_2 = 3.185734308993e-02 -------------------------------------------------------------------------- Actual time step : 0.01250 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 4692 markers and merged 24 markers in 1.6859e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00288374 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.01250000 [Myr] Tentative time step : 0.01250000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 3.188552971358e-02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 11 1 SNES Function norm 1.891353888714e-07 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.611755 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.163910967605e-09 |Div|_2 = 1.007415909660e-08 Momentum: |mRes|_2 = 1.888669019231e-07 -------------------------------------------------------------------------- Actual time step : 0.01250 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 8386 markers and merged 136 markers in 2.3117e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00271449 sec) -------------------------------------------------------------------------- ================================= STEP 3 ================================= -------------------------------------------------------------------------- Current time : 0.02500000 [Myr] Tentative time step : 0.01250000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.891353882404e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 13 1 SNES Function norm 3.806690487543e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.629348 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.732544348338e-15 |Div|_2 = 6.229370514023e-14 Momentum: |mRes|_2 = 3.806180757958e-12 -------------------------------------------------------------------------- Actual time step : 0.01250 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 9921 markers and merged 252 markers in 3.2151e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00274014 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 2.96286 (sec) -------------------------------------------------------------------------- Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 100000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 30 Time step : 0.01 [Myr] Minimum time step : 1e-05 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 5 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [64, 1, 64] Number of cells : 4096 Number of faces : 16512 Maximum cell aspect ratio : 1.28000 Lower coordinate bounds [bx, by, bz] : [-500., -10., -1000.] Upper coordinate bounds [ex, ey, ez] : [500., 10., 50.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- Air (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+22 [Pa*s] Bd = 5e-23 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1e+06 [J/kg/K] k = 100. [W/m/k] Phase ID : 1 -- OCrust (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+24 [Pa*s] Bd = 5e-25 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 2 -- Omantle (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 3 -- Umantle (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 4 -- Plume (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 5 -- Lmantle (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+21 [Pa*s] Bd = 5e-22 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 6 -- Plume2 (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 7 -- Umantle2 (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] -------------------------------------------------------------------------- Phase Transition laws: -------------------------------------------------------------------------- Phase Transition [0] : Constant Parameter : T Transition Value : 1200.000 Phase Above : 3 Phase Below : 2 Direction : BothWays Phase Transition [1] : Constant Parameter : Depth Transition Value : -400.000 Phase Above : 6 Phase Below : 4 Direction : BelowToAbove Reset Parameter : APS Phase Transition [2] : Clapeyron Transition law : Mantle_Transition_660km # Equations : 1 [ P = P0 + gamma*(T-T0) ] eq[0] : gamma = -2.50e+00 [MPa/C], P0 = 2.30e+10 [Pa], T0 = 1667.0 [deg C] Phase Above : 5 Phase Below : 3 Direction : BothWays Phase Transition [3] : Box Box Bounds : [200.0; 400.0; -100.0; 100.0; -1000.0; -500.0] [km] Box Vicinity : Use all particles to check inside/outside Linear Temp; bot T : 1300.0 [C] Linear Temp; top T : 20.0 [C] Phase Outside : 3 Phase Inside : 7 Direction : BothWays Reset Parameter : APS Adjusting density values due to phase transitions: -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 1 0 Open top boundary @ Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.0315244 sec) -------------------------------------------------------------------------- Output parameters: Output file name : Plume_PhaseTransitions_new Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- Initializing pressure with lithostatic pressure ... done (0.00186866 sec) -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 1.985087139977e+04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.594719909526e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.226012 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.736320446684e-03 |Div|_2 = 6.379041312826e-02 Momentum: |mRes|_2 = 1.672770938997e-02 -------------------------------------------------------------------------- Saving output ... done (0.00476 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.01000000 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0245612 sec) -------------------------------------------------------------------------- 0 SNES Function norm 8.903947944260e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.024649811614e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.143191 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.935922950757e-06 |Div|_2 = 6.296964037381e-05 Momentum: |mRes|_2 = 6.024320723283e-03 -------------------------------------------------------------------------- Actual time step : 0.01100 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 441 markers and merged 0 markers in 1.2036e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00379312 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.01100000 [Myr] Tentative time step : 0.01100000 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0285365 sec) -------------------------------------------------------------------------- 0 SNES Function norm 8.034506122548e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.042794808280e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.140908 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.100791055896e-06 |Div|_2 = 2.663022244943e-05 Momentum: |mRes|_2 = 3.042678273585e-03 -------------------------------------------------------------------------- Actual time step : 0.01210 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1089 markers and merged 0 markers in 1.4129e-02 s -------------------------------------------------------------------------- ================================= STEP 3 ================================= -------------------------------------------------------------------------- Current time : 0.02310000 [Myr] Tentative time step : 0.01210000 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.025658 sec) -------------------------------------------------------------------------- 0 SNES Function norm 5.318612913611e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.512638742054e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.140542 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.382602357380e-06 |Div|_2 = 8.871198692501e-06 Momentum: |mRes|_2 = 4.512630022295e-03 -------------------------------------------------------------------------- Actual time step : 0.01271 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1648 markers and merged 0 markers in 1.5615e-02 s -------------------------------------------------------------------------- ================================= STEP 4 ================================= -------------------------------------------------------------------------- Current time : 0.03580813 [Myr] Tentative time step : 0.01270813 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0275999 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.935573222169e+04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.347072227143e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.144994 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.247047888856e-06 |Div|_2 = 7.447201618764e-06 Momentum: |mRes|_2 = 2.347072108994e-02 -------------------------------------------------------------------------- Actual time step : 0.01317 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2283 markers and merged 0 markers in 1.5534e-02 s -------------------------------------------------------------------------- ================================= STEP 5 ================================= -------------------------------------------------------------------------- Current time : 0.04898011 [Myr] Tentative time step : 0.01317198 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0288037 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.589238590905e+04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.013070382147e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.140972 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.805947853928e-06 |Div|_2 = 3.560205426322e-06 Momentum: |mRes|_2 = 1.013070319589e-02 -------------------------------------------------------------------------- Actual time step : 0.01348 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2457 markers and merged 3 markers in 1.7366e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00362877 sec) -------------------------------------------------------------------------- ================================= STEP 6 ================================= -------------------------------------------------------------------------- Current time : 0.06246502 [Myr] Tentative time step : 0.01348490 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0270252 sec) -------------------------------------------------------------------------- 0 SNES Function norm 7.105193382543e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.154888385840e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.143529 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.625893629040e-06 |Div|_2 = 7.876091187835e-06 Momentum: |mRes|_2 = 1.154888117274e-02 -------------------------------------------------------------------------- Actual time step : 0.01377 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2718 markers and merged 21 markers in 1.7891e-02 s -------------------------------------------------------------------------- ================================= STEP 7 ================================= -------------------------------------------------------------------------- Current time : 0.07623411 [Myr] Tentative time step : 0.01376910 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0266317 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.042373659728e+04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.510094877904e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.137671 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.794971457089e-06 |Div|_2 = 6.312594508142e-06 Momentum: |mRes|_2 = 1.510094745962e-02 -------------------------------------------------------------------------- Actual time step : 0.01399 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3179 markers and merged 33 markers in 1.7579e-02 s -------------------------------------------------------------------------- ================================= STEP 8 ================================= -------------------------------------------------------------------------- Current time : 0.09022767 [Myr] Tentative time step : 0.01399356 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0272649 sec) -------------------------------------------------------------------------- 0 SNES Function norm 2.871444769587e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.658430341970e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.136112 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.403254490275e-06 |Div|_2 = 5.498127413823e-06 Momentum: |mRes|_2 = 1.658421228085e-03 -------------------------------------------------------------------------- Actual time step : 0.01398 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3119 markers and merged 57 markers in 1.8657e-02 s -------------------------------------------------------------------------- ================================= STEP 9 ================================= -------------------------------------------------------------------------- Current time : 0.10421032 [Myr] Tentative time step : 0.01398265 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0273609 sec) -------------------------------------------------------------------------- 0 SNES Function norm 4.449583974129e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.322063249770e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.139916 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.449661887811e-06 |Div|_2 = 5.875773877495e-06 Momentum: |mRes|_2 = 5.322060006223e-03 -------------------------------------------------------------------------- Actual time step : 0.01428 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3466 markers and merged 90 markers in 2.0526e-02 s -------------------------------------------------------------------------- ================================ STEP 10 ================================= -------------------------------------------------------------------------- Current time : 0.11849403 [Myr] Tentative time step : 0.01428371 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0335477 sec) -------------------------------------------------------------------------- 0 SNES Function norm 4.706865316454e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.788517436845e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.137131 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.971033394610e-06 |Div|_2 = 3.839433186097e-06 Momentum: |mRes|_2 = 2.788514793639e-03 -------------------------------------------------------------------------- Actual time step : 0.01439 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3661 markers and merged 117 markers in 2.2224e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00372924 sec) -------------------------------------------------------------------------- ================================ STEP 11 ================================= -------------------------------------------------------------------------- Current time : 0.13288211 [Myr] Tentative time step : 0.01438807 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0292705 sec) -------------------------------------------------------------------------- 0 SNES Function norm 8.991485040991e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.694136165734e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.13854 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.383957079883e-06 |Div|_2 = 5.825431414762e-06 Momentum: |mRes|_2 = 8.694134214094e-03 -------------------------------------------------------------------------- Actual time step : 0.01458 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3219 markers and merged 150 markers in 2.3649e-02 s -------------------------------------------------------------------------- ================================ STEP 12 ================================= -------------------------------------------------------------------------- Current time : 0.14746103 [Myr] Tentative time step : 0.01457892 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0326691 sec) -------------------------------------------------------------------------- 0 SNES Function norm 5.473879258981e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.560793671473e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.138999 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.258375541324e-06 |Div|_2 = 2.992576486504e-06 Momentum: |mRes|_2 = 3.560792413957e-03 -------------------------------------------------------------------------- Actual time step : 0.01463 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3311 markers and merged 161 markers in 2.4954e-02 s -------------------------------------------------------------------------- ================================ STEP 13 ================================= -------------------------------------------------------------------------- Current time : 0.16209081 [Myr] Tentative time step : 0.01462979 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0366742 sec) -------------------------------------------------------------------------- 0 SNES Function norm 4.275685042272e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.103768241593e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.136853 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.613569589706e-06 |Div|_2 = 3.362504229368e-06 Momentum: |mRes|_2 = 5.103767133937e-03 -------------------------------------------------------------------------- Actual time step : 0.01468 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3513 markers and merged 249 markers in 2.4673e-02 s -------------------------------------------------------------------------- ================================ STEP 14 ================================= -------------------------------------------------------------------------- Current time : 0.17677097 [Myr] Tentative time step : 0.01468015 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0313258 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.350290833178e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.726032134112e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.139193 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.747924524954e-06 |Div|_2 = 6.606745373525e-06 Momentum: |mRes|_2 = 1.726019489723e-03 -------------------------------------------------------------------------- Actual time step : 0.01480 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3237 markers and merged 241 markers in 2.5077e-02 s -------------------------------------------------------------------------- ================================ STEP 15 ================================= -------------------------------------------------------------------------- Current time : 0.19157476 [Myr] Tentative time step : 0.01480379 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0328364 sec) -------------------------------------------------------------------------- 0 SNES Function norm 2.674533097998e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.036490753468e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.147372 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.276829055403e-06 |Div|_2 = 5.026127715309e-06 Momentum: |mRes|_2 = 3.036486593736e-03 -------------------------------------------------------------------------- Actual time step : 0.01474 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3166 markers and merged 301 markers in 2.5405e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00357939 sec) -------------------------------------------------------------------------- ================================ STEP 16 ================================= -------------------------------------------------------------------------- Current time : 0.20631027 [Myr] Tentative time step : 0.01473551 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0328061 sec) -------------------------------------------------------------------------- 0 SNES Function norm 3.214195749760e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.255579919968e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.137126 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 7.215428179386e-07 |Div|_2 = 1.542132189085e-06 Momentum: |mRes|_2 = 1.255578972927e-03 -------------------------------------------------------------------------- Actual time step : 0.01494 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2829 markers and merged 348 markers in 2.6510e-02 s -------------------------------------------------------------------------- ================================ STEP 17 ================================= -------------------------------------------------------------------------- Current time : 0.22125036 [Myr] Tentative time step : 0.01494009 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0377182 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.415360965464e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.397087471237e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.137624 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.282432859018e-06 |Div|_2 = 2.980539196763e-06 Momentum: |mRes|_2 = 1.397084291900e-03 -------------------------------------------------------------------------- Actual time step : 0.01505 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3076 markers and merged 366 markers in 2.7221e-02 s -------------------------------------------------------------------------- ================================ STEP 18 ================================= -------------------------------------------------------------------------- Current time : 0.23629778 [Myr] Tentative time step : 0.01504742 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0346696 sec) -------------------------------------------------------------------------- 0 SNES Function norm 3.271567359873e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.069485309642e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.138581 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.690801147980e-06 |Div|_2 = 4.153467007522e-06 Momentum: |mRes|_2 = 3.069482499514e-03 -------------------------------------------------------------------------- Actual time step : 0.01518 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2831 markers and merged 351 markers in 2.9969e-02 s -------------------------------------------------------------------------- ================================ STEP 19 ================================= -------------------------------------------------------------------------- Current time : 0.25147556 [Myr] Tentative time step : 0.01517778 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0381118 sec) -------------------------------------------------------------------------- 0 SNES Function norm 8.407677792888e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.478870555625e-04 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.151312 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.034064185168e-06 |Div|_2 = 1.427767384948e-06 Momentum: |mRes|_2 = 3.478841256917e-04 -------------------------------------------------------------------------- Actual time step : 0.01517 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2958 markers and merged 373 markers in 2.8330e-02 s -------------------------------------------------------------------------- ================================ STEP 20 ================================= -------------------------------------------------------------------------- Current time : 0.26665036 [Myr] Tentative time step : 0.01517480 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0417849 sec) -------------------------------------------------------------------------- 0 SNES Function norm 3.454633636616e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.597346615330e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.138646 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.757287793226e-06 |Div|_2 = 4.633531387496e-06 Momentum: |mRes|_2 = 4.597344280328e-03 -------------------------------------------------------------------------- Actual time step : 0.01529 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2615 markers and merged 348 markers in 2.8746e-02 s -------------------------------------------------------------------------- Saving output ... done (0.0035863 sec) -------------------------------------------------------------------------- ================================ STEP 21 ================================= -------------------------------------------------------------------------- Current time : 0.28194393 [Myr] Tentative time step : 0.01529357 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0352873 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.662243615071e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.457572792318e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.136579 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.549740517276e-06 |Div|_2 = 2.356606806332e-06 Momentum: |mRes|_2 = 1.457570887233e-03 -------------------------------------------------------------------------- Actual time step : 0.01530 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2223 markers and merged 464 markers in 3.3198e-02 s -------------------------------------------------------------------------- ================================ STEP 22 ================================= -------------------------------------------------------------------------- Current time : 0.29723979 [Myr] Tentative time step : 0.01529587 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0364381 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.666098628745e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.181579776420e-04 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.13997 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.105071822966e-07 |Div|_2 = 4.345251602430e-07 Momentum: |mRes|_2 = 2.181575448998e-04 -------------------------------------------------------------------------- Actual time step : 0.01536 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2358 markers and merged 388 markers in 2.9710e-02 s -------------------------------------------------------------------------- ================================ STEP 23 ================================= -------------------------------------------------------------------------- Current time : 0.31259987 [Myr] Tentative time step : 0.01536008 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0364479 sec) -------------------------------------------------------------------------- 0 SNES Function norm 6.520633752479e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.585323132561e-04 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.137163 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.074607750498e-07 |Div|_2 = 1.241583485338e-06 Momentum: |mRes|_2 = 3.585301634720e-04 -------------------------------------------------------------------------- Actual time step : 0.01533 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2052 markers and merged 489 markers in 3.0266e-02 s -------------------------------------------------------------------------- ================================ STEP 24 ================================= -------------------------------------------------------------------------- Current time : 0.32792814 [Myr] Tentative time step : 0.01532827 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0394507 sec) -------------------------------------------------------------------------- 0 SNES Function norm 7.544791942376e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.645518857154e-04 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.142595 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.963381580539e-06 |Div|_2 = 3.578799441957e-06 Momentum: |mRes|_2 = 6.645422492230e-04 -------------------------------------------------------------------------- Actual time step : 0.01533 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1961 markers and merged 581 markers in 3.0631e-02 s -------------------------------------------------------------------------- ================================ STEP 25 ================================= -------------------------------------------------------------------------- Current time : 0.34326050 [Myr] Tentative time step : 0.01533236 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0371474 sec) -------------------------------------------------------------------------- 0 SNES Function norm 2.428135768392e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.940813617477e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.137894 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.323266839596e-06 |Div|_2 = 2.195414288975e-06 Momentum: |mRes|_2 = 1.940812375769e-03 -------------------------------------------------------------------------- Actual time step : 0.01535 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2019 markers and merged 548 markers in 3.3474e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00379834 sec) -------------------------------------------------------------------------- ================================ STEP 26 ================================= -------------------------------------------------------------------------- Current time : 0.35861463 [Myr] Tentative time step : 0.01535414 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0436036 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.789866730496e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.615523047067e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.136247 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.855295772624e-06 |Div|_2 = 3.281914795005e-06 Momentum: |mRes|_2 = 1.615519713479e-03 -------------------------------------------------------------------------- Actual time step : 0.01538 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1918 markers and merged 626 markers in 3.4884e-02 s -------------------------------------------------------------------------- ================================ STEP 27 ================================= -------------------------------------------------------------------------- Current time : 0.37399938 [Myr] Tentative time step : 0.01538475 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0378142 sec) -------------------------------------------------------------------------- 0 SNES Function norm 5.889560968213e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.610205639529e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.137491 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.735301883940e-07 |Div|_2 = 1.052907877585e-06 Momentum: |mRes|_2 = 1.610205295283e-03 -------------------------------------------------------------------------- Actual time step : 0.01541 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1756 markers and merged 594 markers in 3.3595e-02 s -------------------------------------------------------------------------- ================================ STEP 28 ================================= -------------------------------------------------------------------------- Current time : 0.38940579 [Myr] Tentative time step : 0.01540641 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0384785 sec) -------------------------------------------------------------------------- 0 SNES Function norm 6.172228468350e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.191147607294e-04 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.138443 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.224928623258e-06 |Div|_2 = 5.311699400284e-06 Momentum: |mRes|_2 = 5.190875847645e-04 -------------------------------------------------------------------------- Actual time step : 0.01550 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1699 markers and merged 628 markers in 3.2556e-02 s -------------------------------------------------------------------------- ================================ STEP 29 ================================= -------------------------------------------------------------------------- Current time : 0.40491046 [Myr] Tentative time step : 0.01550467 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0398295 sec) -------------------------------------------------------------------------- 0 SNES Function norm 2.295216675739e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.561757840034e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.140075 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.107123301842e-06 |Div|_2 = 4.128857669323e-06 Momentum: |mRes|_2 = 1.561752382243e-03 -------------------------------------------------------------------------- Actual time step : 0.01561 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1661 markers and merged 673 markers in 3.3892e-02 s -------------------------------------------------------------------------- ================================ STEP 30 ================================= -------------------------------------------------------------------------- Current time : 0.42052352 [Myr] Tentative time step : 0.01561306 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0471015 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.803452452713e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.966698890739e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.139473 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.558964615428e-06 |Div|_2 = 3.788307440217e-06 Momentum: |mRes|_2 = 1.966695242167e-03 -------------------------------------------------------------------------- Actual time step : 0.01574 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1519 markers and merged 607 markers in 3.8719e-02 s -------------------------------------------------------------------------- Saving output ... done (0.0039337 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 10.611 (sec) -------------------------------------------------------------------------- pwd() = "/home/pkgeval/.julia/packages/LaMEM/M6C0P/test" readdir() = ["CreateMarkers_Subduction_Linear_FreeSlip_parallel.jl", "Rhyolite.in", "input_files", "markers", "mesh_refinement_test.jl", "read_logfile.jl", "read_timestep.jl", "runLaMEM.jl", "run_lamem_save_grid_test.jl", "runtests.jl", "test_GeoParams_integration.jl", "test_compression.jl", "test_erosion.jl", "test_examples.jl", "test_julia_setup_phase_diagrams.jl", "test_julia_setups.jl", "test_sedimentation.jl"] Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 100000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 4 Time step : 0.04 [Myr] Minimum time step : 0.004 [Myr] Maximum time step : 0.2 [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 1, 16] Number of cells : 256 Number of faces : 1056 Maximum cell aspect ratio : 6.25000 Lower coordinate bounds [bx, by, bz] : [-100., -1., -100.] Upper coordinate bounds [ex, ey, ez] : [100., 1., 0.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- heter - Employing phase diagram: /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/Rhyolite (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] Phase ID : 0 -- matrix - Employing phase diagram: /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/Rhyolite (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Top boundary temperature : 0. [C] Bottom boundary temperature : 989.583 [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.00215065 sec) -------------------------------------------------------------------------- Phase Diagrams: Diagrams employed for phases : 0: P range=[0.2-20.2] kbar, T range = [386.4-2086.4] K 1: -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ Melt fraction @ Fluid density @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 3.934530286730e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.581262562749e+02 1 PICARD ||F||/||F0||=4.018936e-02 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 2 SNES Function norm 1.117627025004e+01 2 MMFD ||F||/||F0||=2.840560e-03 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 3 SNES Function norm 1.432330149671e-01 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 3 SNES solution time : 0.0145013 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.002321873040e-09 |Div|_2 = 5.644441176775e-08 Momentum: |mRes|_2 = 1.432330149671e-01 -------------------------------------------------------------------------- Saving output ... done (0.000891822 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.04000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 3.050235816760e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.039676666126e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.00600198 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.069414583551e-18 |Div|_2 = 3.162302608719e-17 Momentum: |mRes|_2 = 3.039676666126e-03 -------------------------------------------------------------------------- Actual time step : 0.04400 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.6590e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000903931 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.04400000 [Myr] Tentative time step : 0.04400000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 3.040264438959e-03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 6.434728602950e-05 1 PICARD ||F||/||F0||=2.116503e-02 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 2 SNES Function norm 1.391731242115e-06 2 MMFD ||F||/||F0||=4.577665e-04 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 3 SNES Function norm 3.775960634440e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 3 SNES solution time : 0.0188662 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 7.030373462211e-20 |Div|_2 = 2.243793518119e-19 Momentum: |mRes|_2 = 3.775960634440e-12 -------------------------------------------------------------------------- Actual time step : 0.04840 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.5961e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000811012 sec) -------------------------------------------------------------------------- ================================= STEP 3 ================================= -------------------------------------------------------------------------- Current time : 0.09240000 [Myr] Tentative time step : 0.04840000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 2.883181848925e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 7.210941128243e-07 1 PICARD ||F||/||F0||=2.501036e-02 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 2 SNES Function norm 1.472232176353e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.0104752 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.343431206158e-15 |Div|_2 = 7.266627062028e-15 Momentum: |mRes|_2 = 1.472232176353e-08 -------------------------------------------------------------------------- Actual time step : 0.05324 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.7071e-04 s -------------------------------------------------------------------------- Saving output ... done (0.00120587 sec) -------------------------------------------------------------------------- ================================= STEP 4 ================================= -------------------------------------------------------------------------- Current time : 0.14564000 [Myr] Tentative time step : 0.05324000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 3.170864950966e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 7.927997956283e-07 1 PICARD ||F||/||F0||=2.500264e-02 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 2 SNES Function norm 1.618712375651e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00973647 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.477117569190e-15 |Div|_2 = 7.988983672080e-15 Momentum: |mRes|_2 = 1.618712375651e-08 -------------------------------------------------------------------------- Actual time step : 0.05856 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.6649e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000897611 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.115215 (sec) -------------------------------------------------------------------------- Saved file: Model3D.vts cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 2 Time step : 1. [Myr] Minimum time step : 0.2 [Myr] Maximum time step : 10. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 1, 16] Number of cells : 256 Number of faces : 1056 Maximum cell aspect ratio : 2.00000 Lower coordinate bounds [bx, by, bz] : [-2., -0.09375, -1.] Upper coordinate bounds [ex, ey, ez] : [2., 0.09375, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- sphere (dens) : rho = 3200. [kg/m^3] (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : geometric primitives Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise Background phase ID : 0 -------------------------------------------------------------------------- Reading geometric primitives ... done (0.000141179 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 9.118551990311e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.116028797339e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00718487 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.174184490476e-18 |Div|_2 = 5.984135402956e-18 Momentum: |mRes|_2 = 1.116028797323e-12 -------------------------------------------------------------------------- Saving output ... done (0.000955931 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 1.00000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.116028797339e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.979851535660e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00405858 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.877881017396e-30 |Div|_2 = 3.192494526470e-29 Momentum: |mRes|_2 = 4.979851535660e-14 -------------------------------------------------------------------------- Actual time step : 1.10000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.7168e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000793792 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0349805 (sec) -------------------------------------------------------------------------- Saved file: Model3D.vts cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 2 Time step : 1. [Myr] Minimum time step : 0.2 [Myr] Maximum time step : 10. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 1, 16] Number of cells : 256 Number of faces : 1056 Maximum cell aspect ratio : 2.00000 Lower coordinate bounds [bx, by, bz] : [-2., -0.09375, -1.] Upper coordinate bounds [ex, ey, ez] : [2., 0.09375, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- sphere (dens) : rho = 3200. [kg/m^3] (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : geometric primitives Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise Background phase ID : 0 -------------------------------------------------------------------------- Reading geometric primitives ... done (0.000565845 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 9.118551990311e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.116028797339e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00802123 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.174184490476e-18 |Div|_2 = 5.984135402956e-18 Momentum: |mRes|_2 = 1.116028797323e-12 -------------------------------------------------------------------------- Saving output ... done (0.000974271 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 1.00000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.116028797339e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.979851535660e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00415874 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.877881017396e-30 |Div|_2 = 3.192494526470e-29 Momentum: |mRes|_2 = 4.979851535660e-14 -------------------------------------------------------------------------- Actual time step : 1.10000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.6200e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000929901 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0346776 (sec) -------------------------------------------------------------------------- cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/input_files/FallingBlock_Multigrid.dat Adding PETSc option: -snes_type ksponly Adding PETSc option: -js_ksp_monitor Adding PETSc option: -crs_pc_type bjacobi Finished parsing input file -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [ ] Maximum number of steps : 1 Time step : 10. [ ] Minimum time step : 1e-05 [ ] Maximum time step : 100. [ ] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.5 Output time step : 0.2 [ ] Output every [n] steps : 1 Output [n] initial steps : 1 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [32, 32, 32] Number of cells : 32768 Number of faces : 101376 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [0., 0., 0.] Upper coordinate bounds [ex, ey, ez] : [1., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 (dens) : rho = 1. [ ] (diff) : eta = 1. [ ] Bd = 0.5 [ ] Phase ID : 1 (dens) : rho = 2. [ ] (diff) : eta = 100. [ ] Bd = 0.005 [ ] Phase ID : 2 (dens) : rho = 2. [ ] (diff) : eta = 1000. [ ] Bd = 0.0005 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -1.] [ ] Surface stabilization (FSSA) : 1. Use lithostatic pressure for creep @ Minimum viscosity : 0.001 [ ] Maximum viscosity : 1e+12 [ ] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : geometric primitives Velocity interpolation scheme : empirical STAGP (STAG + pressure points) Marker control type : pure AVD for all control volumes Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise Background phase ID : 0 Interpolation constant : 0.7 -------------------------------------------------------------------------- Reading geometric primitives ... done (0.0204294 sec) -------------------------------------------------------------------------- Output parameters: Output file name : FB_multigrid Write .pvd file : yes Phase @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Deviatoric stress second invariant @ Deviatoric strain rate tensor @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- AVD output parameters: Write .pvd file : yes AVD refinement factor : 3 -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Preconditioner type : coupled Galerkin geometric multigrid Global coarse grid [nx,ny,nz] : [4, 4, 4] Local coarse grid [nx,ny,nz] : [4, 4, 4] Number of multigrid levels : 4 -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : multigrid Multigrid smoother levels KSP : chebyshev Multigrid smoother levels PC : sor Number of smoothening steps : 10 Coarse level KSP : preonly Coarse level PC : bjacobi -------------------------------------------------------------------------- Saving output ... done (0.919473 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [ ] Tentative time step : 10.00000000 [ ] -------------------------------------------------------------------------- 0 SNES Function norm 1.832203177398e+02 0 PICARD ||F||/||F0||=1.000000e+00 Residual norms for js_ solve. 0 KSP Residual norm 2.121468833494e+01 1 KSP Residual norm 2.007312746141e+01 2 KSP Residual norm 1.436721786209e+01 3 KSP Residual norm 7.031413261028e+00 4 KSP Residual norm 2.361866279194e+00 5 KSP Residual norm 1.011785314253e+00 6 KSP Residual norm 4.700182839567e-01 7 KSP Residual norm 3.431392417306e-01 8 KSP Residual norm 1.759675422301e-01 9 KSP Residual norm 1.053716068647e-01 10 KSP Residual norm 9.342460424411e-02 11 KSP Residual norm 7.749792924243e-02 12 KSP Residual norm 5.192767141878e-02 13 KSP Residual norm 3.842800827033e-02 14 KSP Residual norm 1.589386132911e-02 15 KSP Residual norm 8.851034636242e-03 16 KSP Residual norm 4.554700539865e-03 17 KSP Residual norm 2.632601842348e-03 18 KSP Residual norm 1.311043982030e-03 19 KSP Residual norm 6.462411319589e-04 20 KSP Residual norm 3.583024905386e-04 21 KSP Residual norm 1.510300556884e-04 Linear js_ solve converged due to CONVERGED_RTOL iterations 21 1 SNES Function norm 1.371165827605e-02 -------------------------------------------------------------------------- SNES Convergence Reason : maximum iterations reached Number of iterations : 1 SNES solution time : 7.54023 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.351162529297e-05 |Div|_2 = 1.404433474462e-04 Momentum: |mRes|_2 = 1.371093900305e-02 -------------------------------------------------------------------------- Actual time step : 6.73129 [ ] -------------------------------------------------------------------------- Marker control [0]: (AVD YZED) injected 5 markers and deleted 0 markers in 1.2520e-03 s Marker control [0]: (AVD XZED) injected 7 markers and deleted 0 markers in 1.4598e-03 s Marker control [0]: (AVD XYED) injected 10 markers and deleted 0 markers in 1.9371e-03 s -------------------------------------------------------------------------- Saving output ... done (1.16502 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 11.7522 (sec) -------------------------------------------------------------------------- cores_compute = 4 Falling Block test on 4 cores failed cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/input_files/FallingBlock_DirectSolver.dat Adding PETSc option: -snes_type ksponly Adding PETSc option: -js_ksp_monitor Finished parsing input file -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [ ] Maximum number of steps : 2 Time step : 10. [ ] Minimum time step : 1e-05 [ ] Maximum time step : 100. [ ] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.5 Output time step : 0.2 [ ] Output every [n] steps : 1000 Output [n] initial steps : 1 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 16, 16] Number of cells : 4096 Number of faces : 13056 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [0., 0., 0.] Upper coordinate bounds [ex, ey, ez] : [1., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 (dens) : rho = 1. [ ] (diff) : eta = 1. [ ] Bd = 0.5 [ ] Phase ID : 1 (dens) : rho = 2. [ ] (diff) : eta = 100. [ ] Bd = 0.005 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -1.] [ ] Surface stabilization (FSSA) : 1. Use lithostatic pressure for creep @ Minimum viscosity : 0.001 [ ] Maximum viscosity : 1e+12 [ ] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : geometric primitives Velocity interpolation scheme : empirical STAGP (STAG + pressure points) Marker control type : pure AVD for all control volumes Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise Background phase ID : 0 Interpolation constant : 0.7 -------------------------------------------------------------------------- Reading geometric primitives ... done (0.00368242 sec) -------------------------------------------------------------------------- Output parameters: Output file name : FB_direct Write .pvd file : yes Phase @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ -------------------------------------------------------------------------- AVD output parameters: Write .pvd file : yes AVD refinement factor : 3 -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+03 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- Saving output ... done (0.108573 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [ ] Tentative time step : 10.00000000 [ ] -------------------------------------------------------------------------- 0 SNES Function norm 7.310266752999e+01 0 PICARD ||F||/||F0||=1.000000e+00 Residual norms for js_ solve. 0 KSP Residual norm 2.133540043787e+01 1 KSP Residual norm 1.859427686320e-02 2 KSP Residual norm 2.899733401244e-05 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.649877042896e-04 -------------------------------------------------------------------------- SNES Convergence Reason : maximum iterations reached Number of iterations : 1 SNES solution time : 2.54126 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.056315829386e-06 |Div|_2 = 3.650679845667e-05 Momentum: |mRes|_2 = 1.608980926960e-04 -------------------------------------------------------------------------- Actual time step : 7.69851 [ ] -------------------------------------------------------------------------- Marker control [0]: (AVD CELL) injected 1 markers and deleted 0 markers in 2.9372e-04 s Marker control [0]: (AVD YZED) injected 6 markers and deleted 0 markers in 1.0450e-03 s Marker control [0]: (AVD XZED) injected 8 markers and deleted 0 markers in 1.6513e-03 s Marker control [0]: (AVD XYED) injected 2 markers and deleted 0 markers in 4.5099e-04 s -------------------------------------------------------------------------- Saving output ... done (0.134812 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 7.69851107 [ ] Tentative time step : 7.69851107 [ ] -------------------------------------------------------------------------- 0 SNES Function norm 1.307661178463e+02 0 PICARD ||F||/||F0||=1.000000e+00 Residual norms for js_ solve. 0 KSP Residual norm 1.189285812726e+00 1 KSP Residual norm 1.071718651319e-03 2 KSP Residual norm 2.121756434235e-06 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.789132168326e-04 -------------------------------------------------------------------------- SNES Convergence Reason : maximum iterations reached Number of iterations : 1 SNES solution time : 2.20628 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.594135843254e-08 |Div|_2 = 7.340971818893e-07 Momentum: |mRes|_2 = 5.789127513924e-04 -------------------------------------------------------------------------- Actual time step : 8.25319 [ ] -------------------------------------------------------------------------- Marker control [0]: (AVD YZED) injected 5 markers and deleted 0 markers in 8.8299e-04 s Marker control [0]: (AVD XZED) injected 4 markers and deleted 0 markers in 6.9992e-04 s Marker control [0]: (AVD XYED) injected 7 markers and deleted 0 markers in 1.2010e-03 s -------------------------------------------------------------------------- Saving output ... done (0.118421 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 5.51793 (sec) -------------------------------------------------------------------------- cores_compute = 2 Fatal error in internal_Init_thread: Other MPI error, error stack: internal_Init_thread(67)...........: MPI_Init_thread(argc=0x7ffcf4cb9b4c, argv=0x7ffcf4cb9b40, required=1, provided=0x7ffcf4cb970c) failed MPII_Init_thread(234)..............: MPID_Init(67)......................: init_world(171)....................: channel initialization failed MPIDI_CH3_Init(84).................: MPID_nem_init(314).................: MPID_nem_tcp_init(175).............: MPID_nem_tcp_get_business_card(397): GetSockInterfaceAddr(370)..........: gethostbyname failed, LaMEM-primary-co5W5pFX (errno 2) run LaMEM: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/runLaMEM.jl:4 Got exception outside of a @test failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/bin/mpiexec -n 2 /home/pkgeval/.julia/artifacts/cd461744844630cc33fbd2e7a8e795b56651d039/bin/LaMEM -ParamFile /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/input_files/FallingBlock_DirectSolver.dat '-nstep_max 5'`,["PYTHON=", "LANG=C.UTF-8", "VECLIB_MAXIMUM_THREADS=1", "PATH=/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin", "JULIA_LOAD_PATH=@:/tmp/jl_qL62iM", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_PKG_PRECOMPILE_AUTO=0", "OPENBLAS_MAIN_FREE=1", "DISPLAY=:1", "HOME=/home/pkgeval", "ZES_ENABLE_SYSMAN=1", "R_HOME=*", "JULIA_CPU_THREADS=1", "FONTCONFIG_PATH=/home/pkgeval/.julia/artifacts/2a6bae048c28452d329375cbb7479499115e45ad/etc/fonts", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "FONTCONFIG_FILE=/home/pkgeval/.julia/artifacts/2a6bae048c28452d329375cbb7479499115e45ad/etc/fonts/fonts.conf", "JULIA_NUM_THREADS=1", "OPENBLAS_NUM_THREADS=1", "CI=true", "JULIA_PKGEVAL=true", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/e83428c736a7117825caecd465ca39de72e835b8/lib:/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/lib:/home/pkgeval/.julia/artifacts/0a6a41be79ef85f32aa7d8529d4aebf9ef8ab030/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_real_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_complex_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_complex_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_real_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_real_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_complex_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_complex_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_real_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_real_Int64_deb/lib:/home/pkgeval/.julia/artifacts/cd461744844630cc33fbd2e7a8e795b56651d039/lib:/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib:/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/lib:/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib", "UCX_ERROR_SIGNALS=SIGILL,SIGBUS,SIGFPE", "OMP_NUM_THREADS=1", "PKGEVAL=true", "UCX_MEMTYPE_CACHE=no"]), ProcessExited(15)) [15] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run @ ./process.jl:514 [inlined] [4] run_lamem(ParamFile::String, cores::Int64, args::String; wait::Bool, deactivate_multithreads::Bool) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem.jl:0 [5] run_lamem(ParamFile::String, cores::Int64, args::String) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem.jl:50 [6] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runLaMEM.jl:7 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1837 [inlined] [8] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runLaMEM.jl:36 [inlined] [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [10] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1837 [inlined] [12] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:7 [inlined] [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [14] top-level scope @ none:6 [15] eval(m::Module, e::Any) @ Core ./boot.jl:489 [16] exec_options(opts::Base.JLOptions) @ Base ./client.jl:290 [17] _start() @ Base ./client.jl:557 Saved file: test_data.vts Saved file: test_data_phase.vts read LaMEM output: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/read_timestep.jl:5 Got exception outside of a @test SystemError: opening file "/home/pkgeval/.julia/packages/LaMEM/M6C0P/test/PlumeLithosphereInteraction_passive_tracers.pvd": No such file or directory Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base ./error.jl:186 [2] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Nothing, append::Nothing) @ Base ./iostream.jl:327 [3] open @ ./iostream.jl:306 [inlined] [4] open(f::Base.var"#362#363"{@Kwargs{}}, args::String; kwargs::@Kwargs{}) @ Base ./io.jl:418 [5] open @ ./io.jl:417 [inlined] [6] #readlines#360 @ ./io.jl:713 [inlined] [7] readlines @ ./io.jl:712 [inlined] [8] readPVD(FileName::String) @ LaMEM.IO_functions ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:383 [9] read_LaMEM_simulation(FileName::String, DirName::String; phase::Bool, surf::Bool, passive_tracers::Bool) @ LaMEM.IO_functions ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:593 [10] read_LaMEM_simulation @ ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:581 [inlined] [11] read_LaMEM_timestep(FileName::String, TimeStep::Int64, DirName::String; fields::Nothing, phase::Bool, surf::Bool, passive_tracers::Bool, last::Bool) @ LaMEM.IO_functions ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:550 [12] read_LaMEM_timestep @ ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:548 [inlined] [13] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/read_timestep.jl:8 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1837 [inlined] [15] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/read_timestep.jl:51 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1837 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:8 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:290 [24] _start() @ Base ./client.jl:557 No partitioning file required for 1 core model setup run lamem mode save grid test: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/run_lamem_save_grid_test.jl:3 Got exception outside of a @test MethodError: no method matching length(::Nothing) The function `length` exists, but no method is defined for this combination of argument types. Closest candidates are: length(!Matched::DataStructures.EnumerateAll) @ DataStructures ~/.julia/packages/DataStructures/IrAJn/src/multi_dict.jl:96 length(!Matched::LibGit2.StrArrayStruct) @ LibGit2 /opt/julia/share/julia/stdlib/v1.13/LibGit2/src/strarray.jl:12 length(!Matched::Base.Iterators.Flatten{Tuple{}}) @ Base iterators.jl:1239 ... Stacktrace: [1] run_lamem_save_grid(ParamFile::String, cores::Int64; verbose::Bool, directory::String) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:92 [2] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/run_lamem_save_grid_test.jl:5 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1837 [inlined] [4] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/run_lamem_save_grid_test.jl:11 [inlined] [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [6] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1837 [inlined] [8] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:9 [inlined] [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [10] top-level scope @ none:6 [11] eval(m::Module, e::Any) @ Core ./boot.jl:489 [12] exec_options(opts::Base.JLOptions) @ Base ./client.jl:290 [13] _start() @ Base ./client.jl:557 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 1000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 2 Time step : 1. [Myr] Minimum time step : 0.2 [Myr] Maximum time step : 10. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [24, 24, 24] Number of cells : 13824 Number of faces : 43200 Maximum cell aspect ratio : 2.00000 Lower coordinate bounds [bx, by, bz] : [-1., -1., -1.] Upper coordinate bounds [ex, ey, ez] : [1., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- sphere (dens) : rho = 3200. [kg/m^3] (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.0964766 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Preconditioner type : coupled Galerkin geometric multigrid Global coarse grid [nx,ny,nz] : [12, 12, 12] Local coarse grid [nx,ny,nz] : [12, 12, 12] Number of multigrid levels : 2 -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : multigrid Multigrid smoother levels KSP : chebyshev Multigrid smoother levels PC : sor Number of smoothening steps : 10 Coarse level KSP : preonly Coarse level PC : lu Coarse level solver package : (null) -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 3.403291317974e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 6 1 SNES Function norm 1.464986509563e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 21.489 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.270115706137e-06 |Div|_2 = 6.060118300339e-05 Momentum: |mRes|_2 = 1.463732547230e-03 -------------------------------------------------------------------------- Saving output ... done (0.00780674 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 1.00000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 4.788630241324e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 16 1 SNES Function norm 3.498272686734e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 21.592 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.403141994493e-05 |Div|_2 = 9.116365292802e-05 Momentum: |mRes|_2 = 3.497084639973e-03 -------------------------------------------------------------------------- Actual time step : 1.10000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.8073e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00707292 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 43.9021 (sec) -------------------------------------------------------------------------- | FineGrid | Cores | Nodes | CoarseGrid | CoaCores | Levels | SNES | KSP | TotalTime | CoarseTime | MemNode_Gb | Filename | | --------------- | ----- | ----- | ------------ | -------- | ------ | ---- | --- | --------- | ---------- | ---------- | -------------------------------- | | [512, 256, 256] | 512 | - | [32, 16, 16] | 512 | 5 | 1 | 72 | 26.26 | 9.9174 | - | input_files/128_cores_104812.txt | Saved file: Model3D.vts filesize compression: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/test_compression.jl:6 Got exception outside of a @test MethodError: no method matching length(::Nothing) The function `length` exists, but no method is defined for this combination of argument types. Closest candidates are: length(!Matched::DataStructures.EnumerateAll) @ DataStructures ~/.julia/packages/DataStructures/IrAJn/src/multi_dict.jl:96 length(!Matched::LibGit2.StrArrayStruct) @ LibGit2 /opt/julia/share/julia/stdlib/v1.13/LibGit2/src/strarray.jl:12 length(!Matched::Base.Iterators.Flatten{Tuple{}}) @ Base iterators.jl:1239 ... Stacktrace: [1] run_lamem_save_grid(ParamFile::String, cores::Int64; verbose::Bool, directory::String) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:92 [2] run_lamem_save_grid @ ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:76 [inlined] [3] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:296 [4] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [5] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [6] run_lamem @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [7] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [8] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_compression.jl:7 [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1837 [inlined] [10] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_compression.jl:23 [inlined] [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [12] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1837 [inlined] [14] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:12 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [16] top-level scope @ none:6 [17] eval(m::Module, e::Any) @ Core ./boot.jl:489 [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:290 [19] _start() @ Base ./client.jl:557 rheology = Phase 0 (matrix): rho = 3000.0 eta = 1.0e20 ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000675244 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00169681 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000730273 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.855164213029e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.268605661839e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000930501 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.368738149400e-19 Momentum: |mRes|_2 = 1.268605661765e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4395e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000545355 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012823718e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.590416869505e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000995391 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.533293416683e-19 Momentum: |mRes|_2 = 1.590416869431e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5173e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000546275 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0174677 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.002f0, 0.002f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000701103 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00176751 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000647624 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 8.192074820223e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve did not converge due to DIVERGED_BREAKDOWN iterations 30 1 SNES Function norm 1.996269872508e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00204111 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.385244779468e-17 |Div|_2 = 6.076331735643e-17 Momentum: |mRes|_2 = 1.996269780031e-13 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5085e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000507585 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529035026473e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.131007585929e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00097172 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.533293416683e-18 Momentum: |mRes|_2 = 2.131007580413e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4025e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000537435 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0186248 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.02f0, 0.02f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000733423 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00282729 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000730613 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.900625156863e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.193054234538e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000935121 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 9.501471788263e-18 Momentum: |mRes|_2 = 1.193053856190e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4789e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000542104 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.531321061608e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.505745134977e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00096527 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.201851678990e-17 Momentum: |mRes|_2 = 1.505744655332e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3721e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000483095 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0193305 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.2f0, 0.2f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000802033 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00167145 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000648504 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.408582653022e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.331272599822e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000924991 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.468687011488e-16 Momentum: |mRes|_2 = 2.331226336186e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4683e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000622544 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.744843946556e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.645921959749e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00100672 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.642041997679e-16 Momentum: |mRes|_2 = 1.645840049152e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4415e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000595734 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.017633 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (2.0f0, 2.0f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000698783 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00166561 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000702264 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.007037800205e-09 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve did not converge due to DIVERGED_BREAKDOWN iterations 60 1 SNES Function norm 1.382743448093e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00302831 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 7.771561172376e-15 |Div|_2 = 1.956356625210e-14 Momentum: |mRes|_2 = 1.382743434253e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.6208e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000731463 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 8.543884777184e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.658946166339e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00097712 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.285176065878e-15 Momentum: |mRes|_2 = 1.658896384666e-13 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3958e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000456895 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0204757 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (20.0f0, 20.0f0) τ_linear = [0.0020000000949949026, 0.019999999552965164, 0.20000000298023224, 2.0, 20.0] τ_anal = [0.002, 0.02, 0.20000000000000004, 2.0, 20.0] ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Tumut_Pond_Serpentinite-Raleigh_Paterson_1965 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000684674 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00175907 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000834282 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.732070997253e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.676863757548e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0010265 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.065758146821e-20 |Div|_2 = 1.355252715607e-19 Momentum: |mRes|_2 = 1.676863757493e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4556e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000536585 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012298712e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.344047801612e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00106257 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.714274154578e-19 Momentum: |mRes|_2 = 1.344047801612e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3687e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000526615 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0177722 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00066601264f0, 0.00066601264f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Tumut_Pond_Serpentinite-Raleigh_Paterson_1965 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000734703 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00174786 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000784983 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.538538587820e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 1.914610129611e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00110838 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.673617379884e-19 |Div|_2 = 2.395080882144e-18 Momentum: |mRes|_2 = 1.914610114630e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4934e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000509035 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012236651e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.060973992895e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00104371 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.761620017532e-18 Momentum: |mRes|_2 = 3.060973992895e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3782e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000480006 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.586299 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.001515742f0, 0.001515742f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Tumut_Pond_Serpentinite-Raleigh_Paterson_1965 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000722523 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00171284 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000751563 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.574877395261e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.864620915674e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0010472 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.201851678990e-17 Momentum: |mRes|_2 = 1.864620528344e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4431e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000545045 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529027476038e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.967399903915e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00111426 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.321126039445e-17 Momentum: |mRes|_2 = 6.967399903915e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5084e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000775812 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0184045 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0034495955f0, 0.0034495955f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Tumut_Pond_Serpentinite-Raleigh_Paterson_1965 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000719293 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00181148 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.0028763 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.757947606630e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.193302093907e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00116938 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.455514664586e-16 Momentum: |mRes|_2 = 3.193268922383e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4935e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000856232 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530525989706e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.585686169509e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00117357 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.594436429147e-16 Momentum: |mRes|_2 = 1.585686169509e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4001e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000572885 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0211388 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.007850748f0, 0.007850748f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Tumut_Pond_Serpentinite-Raleigh_Paterson_1965 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000715963 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00173465 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000817852 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.721068317499e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.327026433622e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00106388 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.514142333402e-15 Momentum: |mRes|_2 = 6.325214401243e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4474e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000586794 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673510065039e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.608776481627e-07 1 MMFD ||F||/||F0||=2.156412e-03 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 2 SNES Function norm 7.337506294466e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00265294 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.881784197001e-16 |Div|_2 = 2.717212732710e-15 Momentum: |mRes|_2 = 7.332473400632e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3745e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000579914 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0197969 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.017867092f0, 0.017867092f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000696054 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00183598 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000888222 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.732070997253e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.676863757548e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00103743 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.065758146821e-20 |Div|_2 = 1.355252715607e-19 Momentum: |mRes|_2 = 1.676863757493e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4292e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000693593 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012298712e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.344047801612e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00114753 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.714274154578e-19 Momentum: |mRes|_2 = 1.344047801612e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3758e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000770413 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0186826 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00066601264f0, 0.00066601264f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000686504 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00172364 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000612764 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.536173268120e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve did not converge due to DIVERGED_BREAKDOWN iterations 60 1 SNES Function norm 1.558141012496e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00315038 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.531965080989e-17 |Div|_2 = 1.438840450765e-16 Momentum: |mRes|_2 = 1.558140348159e-13 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5535e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000562295 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012312017e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.061084525594e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00111702 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.505213034913e-19 |Div|_2 = 1.707403288634e-18 Momentum: |mRes|_2 = 3.061084525594e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3685e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000527265 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0200923 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.001515742f0, 0.001515742f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000715183 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00173672 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000642763 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.575177734083e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.883753867839e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00102192 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.250926888277e-17 Momentum: |mRes|_2 = 1.883753452494e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4139e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000627244 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529027475860e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.967410109455e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00103325 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.409296014026e-17 Momentum: |mRes|_2 = 6.967410109455e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4034e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000588025 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0177565 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0034495955f0, 0.0034495955f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000727173 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00172964 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000684474 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.757910772242e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.290919515336e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00102693 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.455514664586e-16 Momentum: |mRes|_2 = 3.290887327778e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4684e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000625964 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530525989717e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.585686263715e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00110869 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.594436429147e-16 Momentum: |mRes|_2 = 1.585686263715e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3814e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000559465 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0182608 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.007850748f0, 0.007850748f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000702094 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00177049 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000692323 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.721073818982e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.206221377386e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00106834 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.489520491948e-15 Momentum: |mRes|_2 = 6.204433662484e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4751e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000951831 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673510065031e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.608776465926e-07 1 MMFD ||F||/||F0||=2.156412e-03 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 2 SNES Function norm 7.323744093763e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00273588 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.881784197001e-16 |Div|_2 = 2.717212732710e-15 Momentum: |mRes|_2 = 7.318701736004e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4362e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000580934 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0202644 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.017867092f0, 0.017867092f0) τ_num1 = [0.0006660126382485032, 0.0015157420421019197, 0.003449595533311367, 0.007850747555494308, 0.017867092043161392] τ_num2 = [0.0006660126382485032, 0.0015157420421019197, 0.003449595533311367, 0.007850747555494308, 0.017867092043161392] ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Dry_Olivine-Ranalli_1995 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000717133 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00172893 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000709573 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 4.999601326924e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 2.245639208773e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00098618 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 2.019281067463e-19 Momentum: |mRes|_2 = 2.245639208773e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4310e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000482976 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529983614622e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 6.355036424707e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00114288 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.151964808266e-18 |Div|_2 = 3.319788279835e-18 Momentum: |mRes|_2 = 6.355036424707e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3882e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000502495 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0176721 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.28025904f0, 0.28025904f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Dry_Olivine-Ranalli_1995 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000735433 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0017482 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000675224 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 5.166485402623e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve did not converge due to DIVERGED_BREAKDOWN iterations 30 1 SNES Function norm 2.672158256062e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00215192 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.035766082959e-18 |Div|_2 = 7.132699033577e-18 Momentum: |mRes|_2 = 2.672158256062e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5132e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000636024 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.532640059961e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 1.214267533388e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00114722 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.433061127045e-14 |Div|_2 = 1.730949475871e-13 Momentum: |mRes|_2 = 1.214267533264e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4233e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000539245 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0196522 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.5410955f0, 0.5410955f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Dry_Olivine-Ranalli_1995 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000674753 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0017482 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.00100814 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.042474277838e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 3.155075594917e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00100109 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.717288626685e-17 Momentum: |mRes|_2 = 3.155075594871e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4547e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000505645 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.542469102073e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 2.344382818817e-07 1 PICARD ||F||/||F0||=1.519890e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 2 SNES Function norm 1.130031258622e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00171618 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.488670298144e-13 |Div|_2 = 4.858601896386e-13 Momentum: |mRes|_2 = 1.130020813724e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3521e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000693093 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0188393 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.0446918f0, 1.0446918f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Dry_Olivine-Ranalli_1995 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000716723 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00186104 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000594264 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.784431980867e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.724013332527e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00101125 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.481742263891e-16 Momentum: |mRes|_2 = 7.724013331105e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4488e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000464735 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.580001929353e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.526537046699e-06 1 PICARD ||F||/||F0||=2.864893e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 2 SNES Function norm 2.764898326264e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00176897 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.594436429147e-16 Momentum: |mRes|_2 = 2.764898321667e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4111e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000580544 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0191895 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (2.0169842f0, 2.0169842f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Dry_Olivine-Ranalli_1995 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000675453 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0017526 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000749883 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.729160028127e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 1.853669481181e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00122131 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.534358746845e-15 Momentum: |mRes|_2 = 1.853669474831e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.6861e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000684003 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.836925303655e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.739374791909e-05 1 PICARD ||F||/||F0||=4.757610e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 2 SNES Function norm 1.216630214054e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00182422 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.294731409828e-15 Momentum: |mRes|_2 = 1.216630213985e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3737e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000529085 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0188683 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (3.8941867f0, 3.8941867f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000667673 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00169073 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000664443 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 4.999601326924e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 2.245639208773e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000988431 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 2.019281067463e-19 Momentum: |mRes|_2 = 2.245639208773e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.6605e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000476005 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529983614622e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 6.355036424707e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00115382 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.151964808266e-18 |Div|_2 = 3.319788279835e-18 Momentum: |mRes|_2 = 6.355036424707e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3622e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000434495 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0174964 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.28025904f0, 0.28025904f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000700203 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00177577 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000617024 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 5.166485402623e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve did not converge due to DIVERGED_BREAKDOWN iterations 30 1 SNES Function norm 2.672158256062e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00227284 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.035766082959e-18 |Div|_2 = 7.132699033577e-18 Momentum: |mRes|_2 = 2.672158256062e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5274e-04 s -------------------------------------------------------------------------- Saving output ... done (0.00093494 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.532640059961e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 1.214267533388e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0010572 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.433061127045e-14 |Div|_2 = 1.730949475871e-13 Momentum: |mRes|_2 = 1.214267533264e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3304e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000421266 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0193613 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.5410955f0, 0.5410955f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000646213 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00179446 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000579094 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.042474277838e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 3.155075594917e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000937311 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.717288626685e-17 Momentum: |mRes|_2 = 3.155075594871e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4736e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000474505 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.542469102073e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 2.344382818817e-07 1 PICARD ||F||/||F0||=1.519890e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 2 SNES Function norm 1.130031258622e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.001847 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.488670298144e-13 |Div|_2 = 4.858601896386e-13 Momentum: |mRes|_2 = 1.130020813724e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4039e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000466815 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0191926 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.0446918f0, 1.0446918f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000708733 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00200436 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000750373 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.784431980867e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.724013332527e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00099593 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.481742263891e-16 Momentum: |mRes|_2 = 7.724013331105e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4051e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000647054 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.580001929353e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.526537046699e-06 1 PICARD ||F||/||F0||=2.864893e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 2 SNES Function norm 2.764898326264e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00174493 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.594436429147e-16 Momentum: |mRes|_2 = 2.764898321667e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5847e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000544395 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0205401 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (2.0169842f0, 2.0169842f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000702143 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00172556 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000734733 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.729160028127e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 1.853669481181e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00108503 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.534358746845e-15 Momentum: |mRes|_2 = 1.853669474831e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4092e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000963201 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.836925303655e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.739374791909e-05 1 PICARD ||F||/||F0||=4.757610e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 2 SNES Function norm 1.216630214054e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00178342 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.294731409828e-15 Momentum: |mRes|_2 = 1.216630213985e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3676e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000535304 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0191989 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (3.8941867f0, 3.8941867f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology dislocation creep profile: Wet_Quarzite-Ueda_et_al_2008 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000717313 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00171601 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.00160525 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.733398697939e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.470853950173e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00114677 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.196926789768e-19 Momentum: |mRes|_2 = 8.470853949328e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4742e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000791022 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012429987e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.141630061900e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00112187 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.735570302230e-19 Momentum: |mRes|_2 = 5.141630061900e-13 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3979e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000716573 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0194527 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00029242327f0, 0.00029242327f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology dislocation creep profile: Wet_Quarzite-Ueda_et_al_2008 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000718133 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00174705 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000728813 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.537125835156e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 1.773537767839e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00109889 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.915082863629e-18 Momentum: |mRes|_2 = 1.773537757500e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4804e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000528835 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012259639e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.412456206055e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00105303 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.622685226975e-18 Momentum: |mRes|_2 = 1.412456206055e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4098e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000568464 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0180077 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00079578283f0, 0.00079578283f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology dislocation creep profile: Wet_Quarzite-Ueda_et_al_2008 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000688353 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00177029 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.00112093 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.575355648999e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.497363577973e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00102772 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.365922630907e-17 Momentum: |mRes|_2 = 1.497362954963e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4301e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000562614 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529027377354e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.845756209644e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00106107 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.226634733347e-17 Momentum: |mRes|_2 = 3.845756209644e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4627e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000600914 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0183942 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0021655946f0, 0.0021655946f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology dislocation creep profile: Wet_Quarzite-Ueda_et_al_2008 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000711343 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00201782 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000624324 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.758143280721e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.557709372943e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00103936 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.775557561563e-17 |Div|_2 = 1.316562550716e-16 Momentum: |mRes|_2 = 2.557675488163e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4210e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000575314 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530525703377e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.046566607204e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00117828 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.455514664586e-16 Momentum: |mRes|_2 = 1.046566607204e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5196e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000576215 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0228278 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0058933166f0, 0.0058933166f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology dislocation creep profile: Wet_Quarzite-Ueda_et_al_2008 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000688993 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00199456 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000611544 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.721067804689e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.655639651614e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00113402 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.336885555458e-15 Momentum: |mRes|_2 = 5.654059359348e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5586e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000450305 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673510051971e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.848062535603e-07 1 MMFD ||F||/||F0||=1.701850e-03 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 2 SNES Function norm 4.525074343373e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00279756 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.881784197001e-16 |Div|_2 = 2.383749925626e-15 Momentum: |mRes|_2 = 4.518791340168e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4047e-04 s -------------------------------------------------------------------------- Saving output ... done (0.00107063 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0221645 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.016037712f0, 0.016037712f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000721533 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00173085 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000747623 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.733398697939e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.470853950173e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00100569 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.196926789768e-19 Momentum: |mRes|_2 = 8.470853949328e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4231e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000608744 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012429987e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.141630061900e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00107124 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.735570302230e-19 Momentum: |mRes|_2 = 5.141630061900e-13 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3959e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000573045 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0186659 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00029242327f0, 0.00029242327f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000737892 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00204683 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000690763 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.537750739444e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 5 1 SNES Function norm 2.281739069316e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00112348 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.301042606983e-18 |Div|_2 = 4.215859886717e-18 Momentum: |mRes|_2 = 2.281739030369e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.7450e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000655013 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012268549e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.412613368437e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00109368 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.502314598737e-18 Momentum: |mRes|_2 = 1.412613368437e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3683e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000597914 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0207656 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00079578283f0, 0.00079578283f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000726193 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00207735 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000861641 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.575355648999e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.497363577973e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00107591 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.365922630907e-17 Momentum: |mRes|_2 = 1.497362954963e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4799e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000581084 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529027377354e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.845756209644e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00113803 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.226634733347e-17 Momentum: |mRes|_2 = 3.845756209644e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4045e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000746942 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.020436 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0021655946f0, 0.0021655946f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000698923 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00180587 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000629774 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.758143280721e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.557709372943e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00102521 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.775557561563e-17 |Div|_2 = 1.316562550716e-16 Momentum: |mRes|_2 = 2.557675488163e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4745e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000604174 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530525703371e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.046566599353e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00118527 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.468687011488e-16 Momentum: |mRes|_2 = 1.046566599353e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3776e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000601825 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0184763 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0058933166f0, 0.0058933166f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000664014 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00174278 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000590844 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.721067804689e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.613639044842e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0010384 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.336885555458e-15 Momentum: |mRes|_2 = 5.612046925667e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.7853e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000514385 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673510051970e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.848062534818e-07 1 MMFD ||F||/||F0||=1.701850e-03 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 2 SNES Function norm 4.645808098495e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00271257 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.790180836525e-15 Momentum: |mRes|_2 = 4.642357742975e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5497e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000530495 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0197255 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.016037712f0, 0.016037712f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology diffusion creep profile : Dry_Plagioclase_RybackiDresen_2000 (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88835 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000684483 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.001827 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000668204 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643776193159e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.468632384106e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000977291 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.496925551340e-19 Momentum: |mRes|_2 = 1.468632376477e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.6200e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000596504 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012493598e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.741239287980e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00119473 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.509145554517e-19 Momentum: |mRes|_2 = 1.741239287915e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5745e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000629524 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0197555 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.6801193f-6, 1.8722288f-6) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology diffusion creep profile : Dry_Plagioclase_RybackiDresen_2000 (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88835 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000884881 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00202296 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000807572 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643775949684e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.290700433835e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00117754 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.651407549307e-18 Momentum: |mRes|_2 = 6.290700217074e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5766e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000601404 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012083211e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.049795325108e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00104689 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.707403288634e-18 Momentum: |mRes|_2 = 2.049795317997e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3364e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000498915 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.020058 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.6801194f-5, 1.8722289f-5) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology diffusion creep profile : Dry_Plagioclase_RybackiDresen_2000 (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88835 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000675553 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00170437 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000713653 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643775888174e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.509971681121e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00094142 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.387778780781e-17 Momentum: |mRes|_2 = 4.509950329163e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4885e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000439355 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529025548536e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.248139529364e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000971811 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.250926888277e-17 Momentum: |mRes|_2 = 1.248138902504e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3938e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000465055 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0171373 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00016801193f0, 0.00018722289f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology diffusion creep profile : Dry_Plagioclase_RybackiDresen_2000 (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88835 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000734282 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00171809 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000639174 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643775926557e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.453753162213e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000957481 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.241267076624e-16 Momentum: |mRes|_2 = 1.453700169309e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4789e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000536784 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530507771875e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.935424250481e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00109781 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.699674944388e-16 Momentum: |mRes|_2 = 1.935349616958e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3704e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000564605 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0179624 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0016801193f0, 0.0018722288f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology diffusion creep profile : Dry_Plagioclase_RybackiDresen_2000 (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88835 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000678113 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00165904 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000590644 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643775934397e-03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.487533228243e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000924121 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.373270039557e-15 Momentum: |mRes|_2 = 1.481180744917e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4779e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000451186 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673362537378e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.370876409381e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00098557 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.505979781574e-15 Momentum: |mRes|_2 = 2.366088586156e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4110e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000431196 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0169223 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.016801193f0, 0.01872228f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88839 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000700343 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00175374 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000649613 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643742963921e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.318548988781e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00098629 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.580482678012e-19 Momentum: |mRes|_2 = 4.318548985889e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5195e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000486505 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529013223529e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.854501415834e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00103928 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.065758146821e-20 |Div|_2 = 1.484604966916e-19 Momentum: |mRes|_2 = 1.854501415775e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3704e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000514195 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0178606 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.6800853f-6, 1.8721911f-6) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88839 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000782373 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00183155 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000604244 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643742768540e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.768238622152e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00097842 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.505213034913e-19 |Div|_2 = 1.761620017532e-18 Momentum: |mRes|_2 = 4.768238296738e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4806e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000472275 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012070155e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.494164679288e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00097357 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.707403288634e-18 Momentum: |mRes|_2 = 1.494164669533e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3351e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000454206 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0181479 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.6800854f-5, 1.872191f-5) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88839 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000727803 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00170892 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000611764 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643742707915e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.303083294658e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000953871 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.097135458930e-17 Momentum: |mRes|_2 = 1.303082832789e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.6251e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000467945 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529025552216e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.737093484513e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0010109 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.430489624538e-17 Momentum: |mRes|_2 = 1.737092895512e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5075e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000483525 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0175111 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00016800854f0, 0.0001872191f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88839 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000727153 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00177507 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000693953 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643742746428e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.276251701487e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00097645 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.401587864986e-16 Momentum: |mRes|_2 = 1.276174737524e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4059e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000505225 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530507773124e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.728004276619e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00128665 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.455514664586e-16 Momentum: |mRes|_2 = 1.727942975830e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4112e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000499085 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0190547 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0016800853f0, 0.001872191f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88839 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000724152 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00211382 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000717243 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643742754277e-03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.380948806640e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00131215 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.368774871884e-15 Momentum: |mRes|_2 = 1.374148521835e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4998e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000559975 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673362539976e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.931460429801e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00121752 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.382216518796e-15 Momentum: |mRes|_2 = 2.928199963534e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5809e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000543715 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0202832 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.016800852f0, 0.018721903f0) Saved file: Model3D.vts Saved file: Model3D.vts Subduction3D: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:13 Got exception outside of a @test LoadError: MethodError: no method matching length(::Nothing) The function `length` exists, but no method is defined for this combination of argument types. Closest candidates are: length(!Matched::DataStructures.EnumerateAll) @ DataStructures ~/.julia/packages/DataStructures/IrAJn/src/multi_dict.jl:96 length(!Matched::LibGit2.StrArrayStruct) @ LibGit2 /opt/julia/share/julia/stdlib/v1.13/LibGit2/src/strarray.jl:12 length(!Matched::Base.Iterators.Flatten{Tuple{}}) @ Base iterators.jl:1239 ... Stacktrace: [1] run_lamem_save_grid(ParamFile::String, cores::Int64; verbose::Bool, directory::String) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:92 [2] run_lamem_save_grid @ ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:76 [inlined] [3] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:296 [4] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [5] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [6] run_lamem @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [7] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [8] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/example_scripts/Subduction3D.jl:99 [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [10] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:6 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1837 [inlined] [12] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:14 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1837 [inlined] [14] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:15 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [16] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1837 [inlined] [18] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:14 [inlined] [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:290 [23] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/LaMEM/M6C0P/example_scripts/Subduction3D.jl:91 caused by: MethodError: no method matching length(::Nothing) The function `length` exists, but no method is defined for this combination of argument types. Closest candidates are: length(!Matched::DataStructures.EnumerateAll) @ DataStructures ~/.julia/packages/DataStructures/IrAJn/src/multi_dict.jl:96 length(!Matched::LibGit2.StrArrayStruct) @ LibGit2 /opt/julia/share/julia/stdlib/v1.13/LibGit2/src/strarray.jl:12 length(!Matched::Base.Iterators.Flatten{Tuple{}}) @ Base iterators.jl:1239 ... Stacktrace: [1] run_lamem_save_grid(ParamFile::String, cores::Int64; verbose::Bool, directory::String) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:92 [2] run_lamem_save_grid @ ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:76 [inlined] [3] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:296 [4] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [5] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [6] run_lamem(model::Model, cores::Int64, args::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [7] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/example_scripts/Subduction3D.jl:94 [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [9] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:6 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1837 [inlined] [11] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:14 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1837 [inlined] [13] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:15 [inlined] [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [15] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1837 [inlined] [17] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:14 [inlined] [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [19] top-level scope @ none:6 [20] eval(m::Module, e::Any) @ Core ./boot.jl:489 [21] exec_options(opts::Base.JLOptions) @ Base ./client.jl:290 [22] _start() @ Base ./client.jl:557 Precompiling packages... 3418.3 ms ✓ StructArrays → StructArraysAdaptExt 30011.6 ms ✓ ImageCore 2026.1 ms ✓ FilePaths 3667.1 ms ✓ ColorBrewer 5591.2 ms ✓ OpenEXR 8034.2 ms ✓ FreeTypeAbstraction 6256.1 ms ✓ ShaderAbstractions 10267.7 ms ✓ MakieCore 3796.3 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 10696.0 ms ✓ Distributions 4455.2 ms ✓ ImageBase 6522.1 ms ✓ PNGFiles 10490.9 ms ✓ JpegTurbo 8282.2 ms ✓ WebP 9593.3 ms ✓ Sixel 30629.0 ms ✓ MathTeXEngine 6989.2 ms ✓ Distributions → DistributionsTestExt 7298.7 ms ✓ Distributions → DistributionsChainRulesCoreExt 7062.9 ms ✓ ImageAxes 9169.8 ms ✓ KernelDensity 4941.4 ms ✓ ImageMetadata 8811.0 ms ✓ Netpbm ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 606 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1213 wait_forever at ./task.jl:1150 jfptr_wait_forever_67471.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3692 [inlined] ijl_apply_generic at /source/src/gf.c:3892 jl_apply at /source/src/julia.h:2343 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1213 wait_forever at ./task.jl:1150 jfptr_wait_forever_67471.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3692 [inlined] ijl_apply_generic at /source/src/gf.c:3892 jl_apply at /source/src/julia.h:2343 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007679a3ff24a0 Total snapshots: 157. Utilization: 0% ╎157 @Base/task.jl:1150 wait_forever() 156╎ 157 @Base/task.jl:1213 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 [606] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/LaMEM/M6C0P/example_scripts/StrengthEnvelop.jl:1 wait at ./task.jl:1213 _ZN12_GLOBAL__N_117RegisterCoalescer20copyCoalesceWorkListEN4llvm15MutableArrayRefIPNS1_12MachineInstrEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) wait_forever at ./task.jl:1150 _ZN12_GLOBAL__N_117RegisterCoalescer17copyCoalesceInMBBEPN4llvm17MachineBasicBlockE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) jfptr_wait_forever_67471.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3692 [inlined] ijl_apply_generic at /source/src/gf.c:3892 jl_apply at /source/src/julia.h:2343 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 23771049 (Pool: 23770385; Big: 664); GC: 25 _ZN12_GLOBAL__N_117RegisterCoalescer20runOnMachineFunctionERN4llvm15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1611 addModule at /source/src/jitlayers.cpp:2092 jl_compile_codeinst_now at /source/src/jitlayers.cpp:683 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:874 jl_compile_method_internal at /source/src/gf.c:3212 _jl_invoke at /source/src/gf.c:3684 [inlined] ijl_apply_generic at /source/src/gf.c:3892 jl_apply at /source/src/julia.h:2343 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:896 ansi_write_ at ./strings/annotated_io.jl:216 [inlined] print at ./strings/annotated_io.jl:241 [inlined] print at ./strings/io.jl:46 println at ./strings/io.jl:77 [inlined] print_tree at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1249 tree at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1309 print_group at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:389 #print#5 at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:331 print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 [inlined] print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 [inlined] print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 _peek_report at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:94 unknown function (ip: 0x7b1fe46c862f) at (unknown file) _jl_invoke at /source/src/gf.c:3692 [inlined] ijl_apply_generic at /source/src/gf.c:3892 jl_apply at /source/src/julia.h:2343 [inlined] jl_f_invokelatest at /source/src/builtins.c:877 profile_printing_listener at ./Base.jl:337 #start_profile_listener##0 at ./Base.jl:355 jfptr_YY.start_profile_listenerYY.YY.0_8114.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3692 [inlined] ijl_apply_generic at /source/src/gf.c:3892 jl_apply at /source/src/julia.h:2343 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 121483133 (Pool: 121481333; Big: 1800); GC: 131 PkgEval terminated after 2737.71s: test duration exceeded the time limit