Package evaluation of Stheno on Julia 1.13.0-DEV.733 (c0ecfe9bcc*) started at 2025-06-12T17:19:44.491 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.37s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.1 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.25.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.09s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 28.36s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_iQAa3H/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.32 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_iQAa3H/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.1 [a9b6321e] Atomix v1.1.1 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.4 [d360d2e6] ChainRulesCore v1.25.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.2 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.14 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.35 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.3.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.36+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#278` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 19m46.8s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1206s / 98.3% 29.7GiB / 99.3% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 761s 64.1% 761s 20.6GiB 70.0% 20.6GiB addition 1 428s 36.1% 428s 11.9GiB 40.4% 11.9GiB Standardised Tests (correlated sum) 1 240s 20.2% 240s 6.46GiB 21.9% 6.46GiB adj_ad 9 33.4s 2.8% 3.71s 1.03GiB 3.5% 117MiB adj_fd 9 9.22s 0.8% 1.02s 329MiB 1.1% 36.6MiB Standardised Tests (independent sum) 1 139s 11.7% 139s 5.11GiB 17.3% 5.11GiB adj_ad 9 27.7s 2.3% 3.08s 1.25GiB 4.2% 142MiB adj_fd 9 10.8s 0.9% 1.20s 314MiB 1.0% 34.9MiB Correlated GPs 1 46.2s 3.9% 46.2s 296MiB 1.0% 296MiB Consistency Tests 1 19.7s 1.7% 19.7s 129MiB 0.4% 129MiB Verify mean / kernel numerically 1 3.09s 0.3% 3.09s 43.3MiB 0.1% 43.3MiB Consistency Tests 1 1.80s 0.2% 1.80s 14.8MiB 0.0% 14.8MiB product 1 157s 13.2% 157s 4.05GiB 13.7% 4.05GiB multiply by function 1 92.8s 7.8% 92.8s 2.16GiB 7.3% 2.16GiB Diff Tests 1 52.3s 4.4% 52.3s 1.62GiB 5.5% 1.62GiB adj_ad 9 20.1s 1.7% 2.23s 886MiB 2.9% 98.4MiB adj_fd 9 6.04s 0.5% 671ms 116MiB 0.4% 12.9MiB Consistency Tests 1 6.43s 0.5% 6.43s 110MiB 0.4% 110MiB multiply by constant 1 63.9s 5.4% 63.9s 1.89GiB 6.4% 1.89GiB Diff Tests 1 48.1s 4.1% 48.1s 1.83GiB 6.2% 1.83GiB adj_ad 9 15.8s 1.3% 1.75s 808MiB 2.7% 89.8MiB adj_fd 9 9.76s 0.8% 1.08s 308MiB 1.0% 34.2MiB Consistency Tests 1 3.98s 0.3% 3.98s 20.4MiB 0.1% 20.4MiB GP mul errors 1 13.2ms 0.0% 13.2ms 40.4KiB 0.0% 40.4KiB compose 1 86.1s 7.3% 86.1s 2.40GiB 8.1% 2.40GiB general 1 51.8s 4.4% 51.8s 1.53GiB 5.2% 1.53GiB Diff Tests 1 45.8s 3.9% 45.8s 1.48GiB 5.0% 1.48GiB adj_ad 9 14.8s 1.2% 1.64s 716MiB 2.4% 79.5MiB adj_fd 9 5.65s 0.5% 628ms 114MiB 0.4% 12.6MiB Consistency Tests 1 4.63s 0.4% 4.63s 39.8MiB 0.1% 39.8MiB Stretch 1 28.2s 2.4% 28.2s 781MiB 2.6% 781MiB scalar stretch 1 27.5s 2.3% 27.5s 768MiB 2.5% 768MiB scalar input 1 26.7s 2.2% 26.7s 764MiB 2.5% 764MiB adj_fd 9 9.06s 0.8% 1.01s 295MiB 1.0% 32.8MiB adj_ad 9 4.06s 0.3% 451ms 142MiB 0.5% 15.8MiB vector input 1 797ms 0.1% 797ms 3.38MiB 0.0% 3.38MiB Vector stretch 1 604ms 0.1% 604ms 10.0MiB 0.0% 10.0MiB Matrix stretch 1 133ms 0.0% 133ms 3.08MiB 0.0% 3.08MiB Shift 1 3.17s 0.3% 3.17s 41.6MiB 0.1% 41.6MiB Shift{Vector{Float64}} 1 1.75s 0.1% 1.75s 15.0MiB 0.0% 15.0MiB Shift{Float64} 1 1.42s 0.1% 1.42s 26.6MiB 0.1% 26.6MiB Select 1 1.59s 0.1% 1.59s 33.3MiB 0.1% 33.3MiB evaluation 1 714ms 0.1% 714ms 21.2MiB 0.1% 21.2MiB idx isa Vector 1 516ms 0.0% 516ms 7.96MiB 0.0% 7.96MiB idx isa Integer 1 363ms 0.0% 363ms 4.09MiB 0.0% 4.09MiB Periodic 1 1.22s 0.1% 1.22s 34.6MiB 0.1% 34.6MiB cross 1 29.8s 2.5% 29.8s 1.39GiB 4.7% 1.39GiB block arrays 1 15.3s 1.3% 15.3s 779MiB 2.6% 779MiB Stheno._collect ∘ _mortar 1 13.6s 1.1% 13.6s 693MiB 2.3% 693MiB BlockMatrix 1 7.00s 0.6% 7.00s 385MiB 1.3% 385MiB adj_fd 1 905ms 0.1% 905ms 112MiB 0.4% 112MiB adj_ad 1 52.5ms 0.0% 52.5ms 2.41MiB 0.0% 2.41MiB BlockVector 1 6.60s 0.6% 6.60s 308MiB 1.0% 308MiB adj_fd 1 816ms 0.1% 816ms 13.2MiB 0.0% 13.2MiB adj_ad 1 284ms 0.0% 284ms 15.9MiB 0.1% 15.9MiB fdm stuff 1 1.73s 0.1% 1.73s 86.3MiB 0.3% 86.3MiB Correctness tests 1 8.13s 0.7% 8.13s 400MiB 1.3% 400MiB Standardised Tests 1 6.28s 0.5% 6.28s 243MiB 0.8% 243MiB gp 1 205s 17.3% 205s 4.52GiB 15.3% 4.52GiB sparse gp 1 21.8s 1.8% 21.8s 383MiB 1.3% 383MiB SparseFiniteGP inference 1 16.6s 1.4% 16.6s 268MiB 0.9% 268MiB SparseFiniteGP methods 1 4.77s 0.4% 4.77s 110MiB 0.4% 110MiB SparseFiniteGP Constructors 1 414ms 0.0% 414ms 4.13MiB 0.0% 4.13MiB adj_ad 2 20.2s 1.7% 10.1s 848MiB 2.8% 424MiB gp 1 16.1s 1.4% 16.1s 267MiB 0.9% 267MiB GP 1 15.7s 1.3% 15.7s 264MiB 0.9% 264MiB independent GPs 1 345ms 0.0% 345ms 2.73MiB 0.0% 2.73MiB wrapped AbstractGP 1 13.5ms 0.0% 13.5ms 291KiB 0.0% 291KiB adj_fd 2 2.57s 0.2% 1.28s 43.4MiB 0.1% 21.7MiB derived_gp 1 159μs 0.0% 159μs 1.59KiB 0.0% 1.59KiB gaussian_process_probabilistic_programme 1 143s 12.1% 143s 2.31GiB 7.8% 2.31GiB Zygote 1 27.4s 2.3% 27.4s 0.98GiB 3.3% 0.98GiB nested gppp 1 16.1s 1.4% 16.1s 93.7MiB 0.3% 93.7MiB External Consistency 1 13.8s 1.2% 13.8s 100MiB 0.3% 100MiB split 1 626ms 0.1% 626ms 12.1MiB 0.0% 12.1MiB gppp macro 1 57.9ms 0.0% 57.9ms 579KiB 0.0% 579KiB doctests 1 69.2s 5.8% 69.2s 1.74GiB 5.9% 1.74GiB BlockData 1 7.69s 0.6% 7.69s 268MiB 0.9% 268MiB vcat(::GPPPInput...) 1 2.51s 0.2% 2.51s 104MiB 0.3% 104MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1221.45s PkgEval succeeded after 1280.22s