Package evaluation of StateSpaceDynamics on Julia 1.13.0-DEV.725 (d6294ba973*) started at 2025-06-10T20:38:31.069 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.81s ################################################################################ # Installation # Installing StateSpaceDynamics... Resolving package versions... Installed DiffResults ────────────── v1.1.0 Installed Rmath_jll ──────────────── v0.5.1+0 Installed MacroTools ─────────────── v0.5.16 Installed Adapt ──────────────────── v4.3.0 Installed ConstructionBase ───────── v1.5.8 Installed ForwardDiff ────────────── v0.10.38 Installed FillArrays ─────────────── v1.13.0 Installed DataStructures ─────────── v0.18.22 Installed DataAPI ────────────────── v1.16.0 Installed HypergeometricFunctions ── v0.3.28 Installed AliasTables ────────────── v1.1.3 Installed OrderedCollections ─────── v1.8.1 Installed Compat ─────────────────── v4.16.0 Installed ArrayInterface ─────────── v7.19.0 Installed StatsBase ──────────────── v0.34.5 Installed Optim ──────────────────── v1.12.0 Installed PositiveFactorizations ─── v0.2.4 Installed StatsAPI ───────────────── v1.7.1 Installed Statistics ─────────────── v1.11.1 Installed ProgressMeter ──────────── v1.10.4 Installed StaticArraysCore ───────── v1.4.3 Installed CommonSubexpressions ───── v0.3.1 Installed StaticArrays ───────────── v1.9.13 Installed PrecompileTools ────────── v1.3.2 Installed IrrationalConstants ────── v0.2.4 Installed OpenSpecFun_jll ────────── v0.5.6+0 Installed QuadGK ─────────────────── v2.11.2 Installed NaNMath ────────────────── v1.1.3 Installed Requires ───────────────── v1.3.1 Installed LogExpFunctions ────────── v0.3.29 Installed DiffRules ──────────────── v1.15.1 Installed Rmath ──────────────────── v0.8.0 Installed Parameters ─────────────── v0.12.3 Installed StatsFuns ──────────────── v1.5.0 Installed PtrArrays ──────────────── v1.3.0 Installed FiniteDiff ─────────────── v2.27.0 Installed ArrayLayouts ───────────── v1.11.1 Installed EnumX ──────────────────── v1.0.5 Installed Distributions ──────────── v0.25.120 Installed NLSolversBase ──────────── v7.10.0 Installed Reexport ───────────────── v1.2.2 Installed Setfield ───────────────── v1.1.2 Installed Missings ───────────────── v1.2.0 Installed JLLWrappers ────────────── v1.7.0 Installed Preferences ────────────── v1.4.3 Installed SpecialFunctions ───────── v2.5.1 Installed SortingAlgorithms ──────── v1.2.1 Installed PDMats ─────────────────── v0.11.35 Installed LineSearches ───────────── v7.3.0 Installed UnPack ─────────────────── v1.0.2 Installed ADTypes ────────────────── v1.14.0 Installed DocStringExtensions ────── v0.9.5 Installed DifferentiationInterface ─ v0.7.0 Installed StateSpaceDynamics ─────── v0.1.1 Installing 2 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.13/Project.toml` [19cf8126] + StateSpaceDynamics v0.1.1 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.19.0 [4c555306] + ArrayLayouts v1.11.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.0 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 ⌅ [f6369f11] + ForwardDiff v0.10.38 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [429524aa] + Optim v1.12.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [19cf8126] + StateSpaceDynamics v0.1.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3a884ed6] + UnPack v1.0.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building StateSpaceDynamics → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0ec6b0fe096ace18afbae1bd8cfc34fe6bef7436/build.log` Installation completed after 11.13s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4760.6 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 613.02s ################################################################################ # Testing # Testing StateSpaceDynamics Status `/tmp/jl_N9U8ld/Project.toml` [4c88cf16] Aqua v0.8.13 [336ed68f] CSV v0.10.15 [a2441757] Coverage v1.6.1 [a93c6f00] DataFrames v1.7.0 [31c24e10] Distributions v0.25.120 ⌅ [f6369f11] ForwardDiff v0.10.38 [98e50ef6] JuliaFormatter v2.1.2 [23992714] MAT v0.10.7 [429524aa] Optim v1.12.0 [276daf66] SpecialFunctions v2.5.1 [19cf8126] StateSpaceDynamics v0.1.1 [4c63d2b9] StatsFuns v1.5.0 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_N9U8ld/Manifest.toml` [47edcb42] ADTypes v1.14.0 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.13 [4fba245c] ArrayInterface v7.19.0 [4c555306] ArrayLayouts v1.11.1 [d1d4a3ce] BitFlags v0.1.9 [e1450e63] BufferedStreams v1.2.2 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [a80b9123] CommonMark v0.9.1 [bbf7d656] 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v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time Package Wide Tests | 11 11 1m06.2s Test Summary: | Pass Total Time SLDS Tests | 4062 4062 1m53.3s Fitting LDS via EM... 6%|███ | ETA: 0:00:02 (17.49 ms/it) Fitting LDS via EM... 13%|██████▌ | ETA: 0:00:02 (26.56 ms/it) Fitting LDS via EM... 28%|██████████████ | ETA: 0:00:01 (16.13 ms/it) Fitting LDS via EM... 42%|█████████████████████ | ETA: 0:00:01 (13.16 ms/it) Fitting LDS via EM... 57%|████████████████████████████▌ | ETA: 0:00:00 (11.53 ms/it) Fitting LDS via EM... 70%|███████████████████████████████████ | ETA: 0:00:00 (11.38 ms/it) Fitting LDS via EM... 85%|██████████████████████████████████████████▌ | ETA: 0:00:00 (10.60 ms/it) Fitting LDS via EM... 100%|██████████████████████████████████████████████████| Time: 0:00:01 (10.05 ms/it) Fitting LDS via EM... 5%|██▌ | ETA: 0:00:02 (20.61 ms/it) Fitting LDS via EM... 8%|████ | ETA: 0:00:02 (25.51 ms/it) Fitting LDS via EM... 13%|██████▌ | ETA: 0:00:02 (23.70 ms/it) Fitting LDS via EM... 18%|█████████ | ETA: 0:00:02 (22.89 ms/it) Fitting LDS via EM... 23%|███████████▌ | ETA: 0:00:02 (23.89 ms/it) Fitting LDS via EM... 28%|██████████████ | ETA: 0:00:02 (23.28 ms/it) Fitting LDS via EM... 33%|████████████████▌ | ETA: 0:00:02 (22.88 ms/it) Fitting LDS via EM... 38%|███████████████████ | ETA: 0:00:01 (23.23 ms/it) Fitting LDS via EM... 43%|█████████████████████▌ | ETA: 0:00:01 (22.96 ms/it) Fitting LDS via EM... 48%|████████████████████████ | ETA: 0:00:01 (22.78 ms/it) Fitting LDS via EM... 53%|██████████████████████████▌ | ETA: 0:00:01 (23.06 ms/it) Fitting LDS via EM... 58%|█████████████████████████████ | ETA: 0:00:01 (22.82 ms/it) Fitting LDS via EM... 63%|███████████████████████████████▌ | ETA: 0:00:01 (22.66 ms/it) Fitting LDS via EM... 68%|██████████████████████████████████ | ETA: 0:00:01 (22.97 ms/it) Fitting LDS via EM... 73%|████████████████████████████████████▌ | ETA: 0:00:01 (22.84 ms/it) Fitting LDS via EM... 78%|███████████████████████████████████████ | ETA: 0:00:00 (22.71 ms/it) Fitting LDS via EM... 83%|█████████████████████████████████████████▌ | ETA: 0:00:00 (22.86 ms/it) Fitting LDS via EM... 88%|████████████████████████████████████████████ | ETA: 0:00:00 (22.71 ms/it) Fitting LDS via EM... 94%|███████████████████████████████████████████████ | ETA: 0:00:00 (22.52 ms/it) Fitting LDS via EM... 98%|█████████████████████████████████████████████████ | ETA: 0:00:00 (22.68 ms/it) Fitting LDS via EM... 100%|██████████████████████████████████████████████████| Time: 0:00:02 (22.61 ms/it) Test Summary: | Pass Total Time GaussianLDS Tests | 66 66 1m56.7s WARNING: Method definition test_Gradient() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:78 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:68. WARNING: Method definition test_Hessian() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:94 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:84. WARNING: Method definition test_smooth() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:117 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:109. WARNING: Method definition test_initial_observation_parameter_updates() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:158 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:161. WARNING: Method definition test_initial_observation_parameter_updates(Int64) in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:158 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:161. WARNING: Method definition test_state_model_parameter_updates() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:195 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:198. WARNING: Method definition test_state_model_parameter_updates(Int64) in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:195 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:198. WARNING: Method definition test_EM() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:285 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:237. WARNING: Method definition test_EM(Int64) in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:285 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:237. Fitting Poisson LDS via LaPlaceEM... 2%|█ | ETA: 0:00:14 ( 0.14 s/it) Fitting Poisson LDS via LaPlaceEM... 7%|███▌ | ETA: 0:00:05 (57.87 ms/it) Fitting Poisson LDS via LaPlaceEM... 11%|█████▌ | ETA: 0:00:05 (50.93 ms/it) Fitting Poisson LDS via LaPlaceEM... 16%|████████ | ETA: 0:00:04 (42.54 ms/it) Fitting Poisson LDS via LaPlaceEM... 21%|██████████▌ | ETA: 0:00:03 (38.32 ms/it) Fitting Poisson LDS via LaPlaceEM... 24%|████████████ | ETA: 0:00:03 (38.64 ms/it) Fitting Poisson LDS via LaPlaceEM... 28%|██████████████ | ETA: 0:00:03 (36.88 ms/it) Fitting Poisson LDS via LaPlaceEM... 32%|████████████████ | ETA: 0:00:02 (35.61 ms/it) Fitting Poisson LDS via LaPlaceEM... 36%|██████████████████ | ETA: 0:00:02 (35.40 ms/it) Fitting Poisson LDS via LaPlaceEM... 40%|████████████████████ | ETA: 0:00:02 (34.52 ms/it) Fitting Poisson LDS via LaPlaceEM... 44%|██████████████████████ | ETA: 0:00:02 (33.75 ms/it) Fitting Poisson LDS via LaPlaceEM... 48%|████████████████████████ | ETA: 0:00:02 (33.59 ms/it) Fitting Poisson LDS via LaPlaceEM... 52%|██████████████████████████ | ETA: 0:00:02 (33.03 ms/it) Fitting Poisson LDS via LaPlaceEM... 56%|████████████████████████████ | ETA: 0:00:01 (32.51 ms/it) Fitting Poisson LDS via LaPlaceEM... 60%|██████████████████████████████ | ETA: 0:00:01 (32.47 ms/it) Fitting Poisson LDS via LaPlaceEM... 64%|████████████████████████████████ | ETA: 0:00:01 (32.02 ms/it) Fitting Poisson LDS via LaPlaceEM... 68%|██████████████████████████████████ | ETA: 0:00:01 (32.02 ms/it) Fitting Poisson LDS via LaPlaceEM... 72%|████████████████████████████████████ | ETA: 0:00:01 (31.69 ms/it) Fitting Poisson LDS via LaPlaceEM... 76%|██████████████████████████████████████ | ETA: 0:00:01 (31.45 ms/it) Fitting Poisson LDS via LaPlaceEM... 80%|████████████████████████████████████████ | ETA: 0:00:01 (31.51 ms/it) Fitting Poisson LDS via LaPlaceEM... 84%|██████████████████████████████████████████ | ETA: 0:00:00 (31.25 ms/it) Fitting Poisson LDS via LaPlaceEM... 88%|████████████████████████████████████████████ | ETA: 0:00:00 (31.03 ms/it) Fitting Poisson LDS via LaPlaceEM... 92%|██████████████████████████████████████████████ | ETA: 0:00:00 (31.05 ms/it) Fitting Poisson LDS via LaPlaceEM... 96%|████████████████████████████████████████████████ | ETA: 0:00:00 (30.84 ms/it) Fitting Poisson LDS via LaPlaceEM... 100%|██████████████████████████████████████████████████| Time: 0:00:03 (30.90 ms/it) Fitting Poisson LDS via LaPlaceEM... 2%|█ | ETA: 0:00:11 ( 0.11 s/it) Fitting Poisson LDS via LaPlaceEM... 3%|█▌ | ETA: 0:00:11 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 4%|██ | ETA: 0:00:11 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 5%|██▌ | ETA: 0:00:11 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 6%|███ | ETA: 0:00:11 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 7%|███▌ | ETA: 0:00:11 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 8%|████ | ETA: 0:00:11 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 9%|████▌ | ETA: 0:00:11 ( 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84%|██████████████████████████████████████████ | ETA: 0:00:02 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 85%|██████████████████████████████████████████▌ | ETA: 0:00:02 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 86%|███████████████████████████████████████████ | ETA: 0:00:02 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 87%|███████████████████████████████████████████▌ | ETA: 0:00:02 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 88%|████████████████████████████████████████████ | ETA: 0:00:01 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 89%|████████████████████████████████████████████▌ | ETA: 0:00:01 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 90%|█████████████████████████████████████████████ | ETA: 0:00:01 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 91%|█████████████████████████████████████████████▌ | ETA: 0:00:01 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 92%|██████████████████████████████████████████████ | ETA: 0:00:01 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 93%|██████████████████████████████████████████████▌ | ETA: 0:00:01 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 94%|███████████████████████████████████████████████ | ETA: 0:00:01 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 95%|███████████████████████████████████████████████▌ | ETA: 0:00:01 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 96%|████████████████████████████████████████████████ | ETA: 0:00:00 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 97%|████████████████████████████████████████████████▌ | ETA: 0:00:00 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 98%|█████████████████████████████████████████████████ | ETA: 0:00:00 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 99%|█████████████████████████████████████████████████▌| ETA: 0:00:00 ( 0.12 s/it) Fitting Poisson LDS via LaPlaceEM... 100%|██████████████████████████████████████████████████| Time: 0:00:12 ( 0.12 s/it) Test Summary: | Pass Total Time PoissonLDS Tests | 62 62 2m23.5s Running EM algorithm... 2%|█ | ETA: 0:02:33 ( 1.56 s/it) Running EM algorithm... 3%|█▌ | ETA: 0:01:48 ( 1.11 s/it) Running EM algorithm... 100%|██████████████████████████████████████████████████| Time: 0:00:03 (33.35 ms/it) ┌ Warning: User did not provide as many emmission models as the function expects (K=2). │ Filling in the rest with deep copies of the provided emission model. │ If this is not the desired behavior, specify all the emission models in the 'B=Vector{EmissionModel}' argument │ rather than 'emission' └ @ StateSpaceDynamics ~/.julia/packages/StateSpaceDynamics/zrsML/src/HiddenMarkovModels.jl:75 Test Summary: | Pass Total Time GaussianHMM Tests | 21 21 41.9s Running EM algorithm... 1%|▌ | ETA: 0:00:44 ( 0.22 s/it) Running EM algorithm... 2%|▊ | ETA: 0:00:44 ( 0.22 s/it) Running EM algorithm... 2%|█ | ETA: 0:00:42 ( 0.21 s/it) Running EM algorithm... 2%|█▎ | ETA: 0:00:41 ( 0.21 s/it) Running EM algorithm... 3%|█▌ | ETA: 0:00:40 ( 0.21 s/it) Running EM algorithm... 4%|█▊ | ETA: 0:00:39 ( 0.20 s/it) Running EM algorithm... 4%|██ | ETA: 0:00:39 ( 0.20 s/it) Running EM algorithm... 4%|██▎ | ETA: 0:00:38 ( 0.20 s/it) Running EM algorithm... 100%|██████████████████████████████████████████████████| Time: 0:00:01 ( 8.95 ms/it) Test Summary: | Pass Broken Total Time Switching Gaussian Regression Tests | 10 2 12 19.4s WARNING: Method definition sample_states(Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/HiddenMarkovModels/SwitchingGaussianRegression.jl:164 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/HiddenMarkovModels/SwitchingPoissonRegression.jl:124. Running EM algorithm... 1%|▌ | ETA: 0:02:30 ( 0.76 s/it) Running EM algorithm... 2%|▊ | ETA: 0:02:28 ( 0.75 s/it) Running EM algorithm... 2%|█ | ETA: 0:02:21 ( 0.72 s/it) Running EM algorithm... 2%|█▎ | ETA: 0:02:08 ( 0.66 s/it) Running EM algorithm... 3%|█▌ | ETA: 0:01:58 ( 0.61 s/it) Running EM algorithm... 4%|█▊ | ETA: 0:01:48 ( 0.56 s/it) Running EM algorithm... 4%|██ | ETA: 0:01:40 ( 0.52 s/it) Running EM algorithm... 4%|██▎ | ETA: 0:01:35 ( 0.50 s/it) Running EM algorithm... 5%|██▌ | ETA: 0:01:29 ( 0.47 s/it) Running EM algorithm... 6%|██▊ | ETA: 0:01:26 ( 0.46 s/it) Running EM algorithm... 6%|███ | ETA: 0:01:23 ( 0.44 s/it) Running EM algorithm... 6%|███▎ | ETA: 0:01:20 ( 0.43 s/it) Running EM algorithm... 7%|███▌ | ETA: 0:01:17 ( 0.42 s/it) Running EM algorithm... 8%|███▊ | ETA: 0:01:15 ( 0.41 s/it) Running EM algorithm... 8%|████ | ETA: 0:01:13 ( 0.40 s/it) Running EM algorithm... 8%|████▎ | ETA: 0:01:12 ( 0.39 s/it) Running EM algorithm... 9%|████▌ | ETA: 0:01:10 ( 0.39 s/it) Running EM algorithm... 10%|████▊ | ETA: 0:01:09 ( 0.38 s/it) Running EM algorithm... 10%|█████ | ETA: 0:01:08 ( 0.38 s/it) Running EM algorithm... 10%|█████▎ | ETA: 0:01:07 ( 0.37 s/it) Running EM algorithm... 11%|█████▌ | ETA: 0:01:06 ( 0.37 s/it) Running EM algorithm... 100%|██████████████████████████████████████████████████| Time: 0:00:08 (40.58 ms/it) Test Summary: | Pass Total Time Switching Poisson Regression Tests | 7 7 29.7s Running EM algorithm... 1%|▌ | ETA: 0:01:17 ( 0.39 s/it) Running EM algorithm... 2%|▊ | ETA: 0:01:26 ( 0.44 s/it) Running EM algorithm... 2%|█ | ETA: 0:01:35 ( 0.49 s/it) Running EM algorithm... 2%|█▎ | ETA: 0:02:08 ( 0.66 s/it) Running EM algorithm... 3%|█▌ | ETA: 0:02:00 ( 0.62 s/it) Running EM algorithm... 4%|█▊ | ETA: 0:01:57 ( 0.60 s/it) Running EM algorithm... 4%|██ | ETA: 0:01:50 ( 0.58 s/it) Running EM algorithm... 4%|██▎ | ETA: 0:01:46 ( 0.55 s/it) Running EM algorithm... 5%|██▌ | ETA: 0:01:42 ( 0.54 s/it) Running EM algorithm... 6%|██▊ | ETA: 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100%|██████████████████████████████████████████████████| Time: 0:00:14 (71.40 ms/it) Test Summary: | Pass Total Time Switching Bernoulli Regression Tests | 8 8 29.0s Iteration: 1, Log-likelihood: -28.635019392284377 Iteration: 2, Log-likelihood: -28.635019392284374 Convergence reached at iteration 2 Iteration: 1, Log-likelihood: -25.866657853258644 Iteration: 1, Log-likelihood: -24.613326670786364 Iteration: 1, Log-likelihood: -23.227626044406904 Iteration: 1, Log-likelihood: -18.25430035313781 Iteration: 1, Log-likelihood: -15.116130414962162 Iteration: 1, Log-likelihood: -13.329173785110548 Iteration: 1, Log-likelihood: -12.437562765987572 Iteration: 1, Log-likelihood: -10.739723444731116 Iteration: 1, Log-likelihood: -0.38258105179165325 Iteration: 1, Log-likelihood: 3.656443811606257 Iteration: 1, Log-likelihood: -1432.411959137131 Iteration: 2, Log-likelihood: -1431.3704955408703 Iteration: 3, Log-likelihood: -1430.6770157030035 Iteration: 4, Log-likelihood: -1430.1668215319764 Iteration: 5, Log-likelihood: -1429.7765049133757 Iteration: 6, Log-likelihood: -1429.4694406543158 Iteration: 7, Log-likelihood: -1429.2223936066196 Iteration: 8, Log-likelihood: -1429.0199074495054 Iteration: 9, Log-likelihood: -1428.8513260020034 Iteration: 10, Log-likelihood: -1428.709081876309 Iteration: 1, Log-likelihood: -1440.8784306405244 Iteration: 1, Log-likelihood: -1436.5739289544597 Iteration: 1, Log-likelihood: -1434.1906169018143 Iteration: 1, Log-likelihood: -1432.702083127928 Iteration: 1, Log-likelihood: -1431.695941136897 Iteration: 1, Log-likelihood: -1430.9765806919336 Iteration: 1, Log-likelihood: -1430.4401787969798 Iteration: 1, Log-likelihood: -1430.026914221333 Iteration: 1, Log-likelihood: -1429.700082572155 Iteration: 1, Log-likelihood: -1429.4360136148296 Iteration: 1, Log-likelihood: -919.4162897604531 Iteration: 2, Log-likelihood: -916.9754007012159 Iteration: 3, Log-likelihood: -915.5935314308639 Iteration: 4, Log-likelihood: -914.5943556380996 Iteration: 5, Log-likelihood: -913.8479623726084 Iteration: 6, Log-likelihood: -913.2773969633826 Iteration: 7, Log-likelihood: -912.8327009852088 Iteration: 8, Log-likelihood: -912.4803445536381 Iteration: 9, Log-likelihood: -912.1971942903822 Iteration: 10, Log-likelihood: -911.966892611721 Iteration: 1, Log-likelihood: -922.1957009534754 Iteration: 1, Log-likelihood: -917.9499885617219 Iteration: 1, Log-likelihood: -915.7620071799331 Iteration: 1, Log-likelihood: -914.5608075901624 Iteration: 1, Log-likelihood: -913.8827019310213 Iteration: 1, Log-likelihood: -913.4911999125023 Iteration: 1, Log-likelihood: -913.2586320181221 Iteration: 1, Log-likelihood: -913.1145426949286 Iteration: 1, Log-likelihood: -913.0196687078563 Iteration: 1, Log-likelihood: -912.9520757165083 Test Summary: | Pass Total Time MixtureModels.jl Tests | 129 129 11.6s Test Summary: | Pass Total Time GaussianRegression Tests | 27 27 10.3s Test Summary: | Pass Total Time BernoulliRegression Tests | 24 24 8.2s Test Summary: | Pass Broken Total Time PoissonRegression Tests | 22 2 24 11.1s Test Summary: | Pass Total Time AutoRegression Tests | 4 4 0.2s [2.5295178655951682 1.5063173806004755 -1.3519904603731112 1.033587136790709 -2.8520243239745664 0.8365486751461346 4.420544999829407 2.561887375072584 -1.9459962419003491 1.011194198775969 2.6939934133409515 2.0938673205660843 -4.507572183264165 1.613393388657641 -2.7808670260249624 -0.30884979887001474 0.9847794671337482 -2.0788172506338443 -1.7396858828907578 4.516853416957839 1.6170567351801346 1.4693956411969322 -4.198974343783511 -5.208261914811404 -1.9033051855313279 2.446995537207763 2.208570371268167 0.873261951153145 3.347160415920637 -1.1440842511457578 0.32341051814209976 0.09706697177236842 -0.6220785047556714 -0.06632047925391671 0.6624596396598144 0.7931338003231168 1.8507009689744223 -5.266814173616969 3.6004544516994748 2.6490251164621683 0.3276423168774904 0.9299996551208203 -0.46064709443095286 0.7198204571432524 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1.6941826676449723 -2.5446302186284964 -1.0063516372502932 -3.6880830032995604 1.4161347284975372 1.0867134942812116 -2.159919579381675 -3.182689271640677 6.179502709221565 2.1266543474726225 -2.7574438227942655 -3.5632315049645613 -1.806805757590149 2.7674808194388922 -1.5081513540999578 -0.2634997411390385 4.849718285569094 1.0084630992511272 1.7839581108251856 1.2725110518777987 -0.6193166974786039 -2.0139827404985167 4.320923301230222 -0.5320856321447807 -0.43336908632581694 5.424854787323663 1.1471039158209277 1.4889898839580453 -1.110264090429153 1.0746716458683978 2.106672857091285]Test Summary: | Pass Total Time AutoRegressive HMM Tests | 10 10 7.9s Test Summary: | Pass Total Time Utilities.jl Tests | 76 76 7.6s Fitting Probabilistic PCA... 2%|▌ | ETA: 0:00:26 Fitting Probabilistic PCA... 100%|███████████████████████| Time: 0:00:00 Test Summary: | Pass Total Time PPCA Tests | 23 23 11.1s Running EM algorithm... 2%|█ | ETA: 0:01:05 ( 0.67 s/it) Running EM algorithm... 3%|█▌ | ETA: 0:00:57 ( 0.58 s/it) Running EM algorithm... 4%|██ | ETA: 0:00:52 ( 0.55 s/it) Running EM algorithm... 5%|██▌ | ETA: 0:00:50 ( 0.52 s/it) Running EM algorithm... 6%|███ | ETA: 0:00:48 ( 0.51 s/it) Running EM algorithm... 7%|███▌ | ETA: 0:00:46 ( 0.50 s/it) Running EM algorithm... 8%|████ | ETA: 0:00:45 ( 0.49 s/it) Running EM algorithm... 9%|████▌ | ETA: 0:00:44 ( 0.48 s/it) Running EM algorithm... 10%|█████ | ETA: 0:00:43 ( 0.48 s/it) Running EM algorithm... 11%|█████▌ | ETA: 0:00:52 ( 0.58 s/it) Running EM algorithm... 12%|██████ | ETA: 0:00:50 ( 0.57 s/it) Running EM algorithm... 13%|██████▌ | ETA: 0:00:49 ( 0.57 s/it) Running EM algorithm... 14%|███████ | ETA: 0:00:48 ( 0.56 s/it) Running EM algorithm... 15%|███████▌ | ETA: 0:00:47 ( 0.55 s/it) Running EM algorithm... 16%|████████ | ETA: 0:00:46 ( 0.55 s/it) Running EM algorithm... 100%|██████████████████████████████████████████████████| Time: 0:00:08 (87.22 ms/it) Running EM algorithm... 2%|█ | ETA: 0:00:30 ( 0.31 s/it) Running EM algorithm... 5%|██▌ | ETA: 0:00:14 ( 0.15 s/it) Running EM algorithm... 8%|████ | ETA: 0:00:10 ( 0.11 s/it) Running EM algorithm... 11%|█████▌ | ETA: 0:00:08 (92.77 ms/it) Running EM algorithm... 14%|███████ | ETA: 0:00:07 (81.47 ms/it) Running EM algorithm... 100%|██████████████████████████████████████████████████| Time: 0:00:01 (12.22 ms/it) Test Summary: | Pass Total Time Viterbi and Class Probability Tests | 37 37 19.1s Testing StateSpaceDynamics tests passed Testing completed after 682.58s PkgEval succeeded after 1345.98s