Package evaluation of PyBoltz on Julia 1.13.0-DEV.725 (d6294ba973*) started at 2025-06-10T15:35:22.298 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.02s ################################################################################ # Installation # Installing PyBoltz... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [0bca4874] + PyBoltz v0.1.1 Updating `~/.julia/environments/v1.13/Manifest.toml` [34da2185] + Compat v4.16.0 [992eb4ea] + CondaPkg v0.2.29 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [0f8b85d8] + JSON3 v1.14.3 [1914dd2f] + MacroTools v0.5.16 [0b3b1443] + MicroMamba v0.1.14 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [0bca4874] + PyBoltz v0.1.1 [6099a3de] + PythonCall v0.9.25 [ae029012] + Requires v1.3.1 [6c6a2e73] + Scratch v1.2.1 [69024149] + StringEncodings v0.3.7 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [e17b2a0c] + UnsafePointers v1.0.0 [ddb6d928] + YAML v0.4.14 [94ce4f54] + Libiconv_jll v1.18.0+0 [f8abcde7] + micromamba_jll v1.5.8+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [458c3c95] + OpenSSL_jll v3.5.0+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Installation completed after 4.23s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 173.7s ################################################################################ # Testing # Testing PyBoltz Status `/tmp/jl_H0zQIT/Project.toml` [00701ae9] BioAlignments v3.1.0 [7e6ae17a] BioSequences v3.4.1 [de9282ab] BioStructures v4.5.0 [34da2185] Compat v4.16.0 [992eb4ea] CondaPkg v0.2.29 [0bca4874] PyBoltz v0.1.1 [6099a3de] PythonCall v0.9.25 [6c6a2e73] Scratch v1.2.1 [ddb6d928] YAML v0.4.14 [1d8dad79] TMscore_jll v1.0.0+0 [8dfed614] Test v1.11.0 Status `/tmp/jl_H0zQIT/Manifest.toml` [00701ae9] BioAlignments v3.1.0 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.4.1 [de9282ab] BioStructures v4.5.0 [3c28c6f8] BioSymbols v5.2.0 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.16.0 [992eb4ea] CondaPkg v0.2.29 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 [1fa38f19] Format v1.3.7 [524e6230] IntervalTrees v1.1.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [0f8b85d8] JSON3 v1.14.3 [1914dd2f] MacroTools v0.5.16 [0b3b1443] MicroMamba v0.1.14 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [0bca4874] PyBoltz v0.1.1 [6099a3de] PythonCall v0.9.25 [3cdcf5f2] RecipesBase v1.3.4 [ae029012] Requires v1.3.1 [6c6a2e73] Scratch v1.2.1 [10745b16] Statistics v1.11.1 [69024149] StringEncodings v0.3.7 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [7200193e] Twiddle v1.1.2 [e17b2a0c] UnsafePointers v1.0.0 [ddb6d928] YAML v0.4.14 [94ce4f54] Libiconv_jll v1.18.0+0 [1d8dad79] TMscore_jll v1.0.0+0 [f8abcde7] micromamba_jll v1.5.8+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.0+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Testing Running tests... CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PyBoltz/VJsW0/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/L4cjh/CondaPkg.toml CondaPkg Resolving changes + boltz (pip) + openssl + python + uv CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_H0zQIT/.CondaPkg ✔ Created /tmp/jl_H0zQIT/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_H0zQIT/.CondaPkg/pixi.toml │ [dependencies] │ uv = ">=0.4" │ openssl = ">=3, <3.6" │ │ [dependencies.python] │ build = "*cpython*" │ channel = "conda-forge" │ version = ">=3.8,<4" │ │ [project] │ description = "automatically generated by CondaPkg.jl" │ name = ".CondaPkg" │ channel-priority = "strict" │ platforms = ["linux-64"] │ channels = ["conda-forge"] │ │ [pypi-dependencies] └ boltz = "~=1.0.0" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_H0zQIT/.CondaPkg/pixi.toml ✔ The default environment has been installed. Precompiling packages... 1469.1 ms ✓ TMscore_jll 1 dependency successfully precompiled in 2 seconds. 27 already precompiled. [ Info: Downloading file from PDB: 1TIT Traceback (most recent call last): File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/bin/boltz", line 4, in from boltz.main import cli File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/boltz/main.py", line 24, in from boltz.model.model import Boltz1 File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/boltz/model/model.py", line 27, in from boltz.model.modules.confidence import ConfidenceModule File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/boltz/model/modules/confidence.py", line 12, in from boltz.model.modules.trunk import ( File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/boltz/model/modules/trunk.py", line 13, in from boltz.model.layers.triangular_attention.attention import ( File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/boltz/model/layers/triangular_attention/attention.py", line 22, in from boltz.model.layers.triangular_attention.primitives import ( File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/boltz/model/layers/triangular_attention/primitives.py", line 48, in from trifast import triangle_attention File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/trifast/__init__.py", line 1, in from trifast.torch import triangle_attention File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/trifast/torch.py", line 9, in from trifast.triton import ( File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/trifast/triton.py", line 4, in from trifast.autotune import autotune File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/trifast/autotune.py", line 13, in from trifast.autotune_helpers import ( File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/trifast/autotune_helpers.py", line 16, in device_capability = torch.cuda.get_device_capability() ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/torch/cuda/__init__.py", line 560, in get_device_capability prop = get_device_properties(device) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/torch/cuda/__init__.py", line 576, in get_device_properties _lazy_init() # will define _get_device_properties ^^^^^^^^^^^^ File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/torch/cuda/__init__.py", line 372, in _lazy_init torch._C._cuda_init() RuntimeError: Found no NVIDIA driver on your system. Please check that you have an NVIDIA GPU and installed a driver from http://www.nvidia.com/Download/index.aspx Single structure run: Error During Test at /home/pkgeval/.julia/packages/PyBoltz/VJsW0/test/runtests.jl:17 Got exception outside of a @test failed process: Process(`boltz predict /tmp/jl_xE2WDi/inputs --cache /home/pkgeval/.julia/scratchspaces/0bca4874-a2b8-4dca-bc03-d2d86e344f1f/boltz_cache --out_dir /tmp/jl_bmtmx4 --output_format mmcif --seed 0 --accelerator cpu`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run @ ./process.jl:514 [inlined] [4] predict(input_path::String; verbose::Bool, _prefix_index::Bool, options::@Kwargs{out_dir::String, output_format::String, seed::Int64, accelerator::String}) @ PyBoltz ~/.julia/packages/PyBoltz/VJsW0/src/predict.jl:59 [5] predict @ ~/.julia/packages/PyBoltz/VJsW0/src/predict.jl:55 [inlined] [6] (::PyBoltz.var"#7#8"{Bool, @Kwargs{out_dir::String, output_format::String, seed::Int64, accelerator::String}, Vector{MolecularInput}})(dir::String) @ PyBoltz ~/.julia/packages/PyBoltz/VJsW0/src/predict.jl:81 [7] mktempdir(fn::PyBoltz.var"#7#8"{Bool, @Kwargs{out_dir::String, output_format::String, seed::Int64, accelerator::String}, Vector{MolecularInput}}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:899 [8] mktempdir (repeats 2 times) @ ./file.jl:895 [inlined] [9] #predict#5 @ ~/.julia/packages/PyBoltz/VJsW0/src/predict.jl:70 [inlined] [10] predict @ ~/.julia/packages/PyBoltz/VJsW0/src/predict.jl:69 [inlined] [11] (::BioStructuresExt.var"#4#5"{@Kwargs{seed::Int64, accelerator::String}, Vector{MolecularInput}})(out_dir::String) @ BioStructuresExt ~/.julia/packages/PyBoltz/VJsW0/ext/BioStructuresExt.jl:15 [12] mktempdir(fn::BioStructuresExt.var"#4#5"{@Kwargs{seed::Int64, accelerator::String}, Vector{MolecularInput}}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:899 [13] mktempdir (repeats 2 times) @ ./file.jl:895 [inlined] [14] #predict#1 @ ~/.julia/packages/PyBoltz/VJsW0/ext/BioStructuresExt.jl:14 [inlined] [15] predict @ ~/.julia/packages/PyBoltz/VJsW0/ext/BioStructuresExt.jl:13 [inlined] [16] predict(input::MolecularInput, ::Type{MolecularStructure}; options::@Kwargs{seed::Int64, accelerator::String}) @ BioStructuresExt ~/.julia/packages/PyBoltz/VJsW0/ext/BioStructuresExt.jl:44 [17] predict @ ~/.julia/packages/PyBoltz/VJsW0/ext/BioStructuresExt.jl:43 [inlined] [18] (::var"#6#7")(dir::String) @ Main ~/.julia/packages/PyBoltz/VJsW0/test/runtests.jl:26 [19] mktempdir(fn::var"#6#7", parent::String; prefix::String) @ Base.Filesystem ./file.jl:899 [20] mktempdir(fn::Function, parent::String) @ Base.Filesystem ./file.jl:895 [21] top-level scope @ ~/.julia/packages/PyBoltz/VJsW0/test/runtests.jl:17 [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [23] macro expansion @ ~/.julia/packages/PyBoltz/VJsW0/test/runtests.jl:18 [inlined] [24] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [25] macro expansion @ ~/.julia/packages/PyBoltz/VJsW0/test/runtests.jl:18 [inlined] [26] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [27] top-level scope @ none:6 [28] eval(m::Module, e::Any) @ Core ./boot.jl:489 [29] exec_options(opts::Base.JLOptions) @ Base ./client.jl:290 [30] _start() @ Base ./client.jl:557 Traceback (most recent call last): File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/bin/boltz", line 4, in from boltz.main import cli File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/boltz/main.py", line 24, in from boltz.model.model import Boltz1 File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/boltz/model/model.py", line 27, in from boltz.model.modules.confidence import ConfidenceModule File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/boltz/model/modules/confidence.py", line 12, in from boltz.model.modules.trunk import ( File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/boltz/model/modules/trunk.py", line 13, in from boltz.model.layers.triangular_attention.attention import ( File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/boltz/model/layers/triangular_attention/attention.py", line 22, in from boltz.model.layers.triangular_attention.primitives import ( File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/boltz/model/layers/triangular_attention/primitives.py", line 48, in from trifast import triangle_attention File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/trifast/__init__.py", line 1, in from trifast.torch import triangle_attention File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/trifast/torch.py", line 9, in from trifast.triton import ( File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/trifast/triton.py", line 4, in from trifast.autotune import autotune File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/trifast/autotune.py", line 13, in from trifast.autotune_helpers import ( File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/trifast/autotune_helpers.py", line 16, in device_capability = torch.cuda.get_device_capability() ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/torch/cuda/__init__.py", line 560, in get_device_capability prop = get_device_properties(device) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/torch/cuda/__init__.py", line 576, in get_device_properties _lazy_init() # will define _get_device_properties ^^^^^^^^^^^^ File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/torch/cuda/__init__.py", line 372, in _lazy_init torch._C._cuda_init() RuntimeError: Found no NVIDIA driver on your system. Please check that you have an NVIDIA GPU and installed a driver from http://www.nvidia.com/Download/index.aspx Directory run: Error During Test at /home/pkgeval/.julia/packages/PyBoltz/VJsW0/test/runtests.jl:32 Got exception outside of a @test failed process: Process(`boltz predict /tmp/jl_78kA84/inputs --cache /home/pkgeval/.julia/scratchspaces/0bca4874-a2b8-4dca-bc03-d2d86e344f1f/boltz_cache --out_dir /tmp/jl_YAL1VP --output_format mmcif --seed 0 --accelerator cpu`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run @ ./process.jl:514 [inlined] [4] predict(input_path::String; verbose::Bool, _prefix_index::Bool, options::@Kwargs{out_dir::String, output_format::String, seed::Int64, accelerator::String}) @ PyBoltz ~/.julia/packages/PyBoltz/VJsW0/src/predict.jl:59 [5] predict @ ~/.julia/packages/PyBoltz/VJsW0/src/predict.jl:55 [inlined] [6] (::PyBoltz.var"#7#8"{Bool, @Kwargs{out_dir::String, output_format::String, seed::Int64, accelerator::String}, Vector{MolecularInput}})(dir::String) @ PyBoltz ~/.julia/packages/PyBoltz/VJsW0/src/predict.jl:81 [7] mktempdir(fn::PyBoltz.var"#7#8"{Bool, @Kwargs{out_dir::String, output_format::String, seed::Int64, accelerator::String}, Vector{MolecularInput}}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:899 [8] mktempdir (repeats 2 times) @ ./file.jl:895 [inlined] [9] #predict#5 @ ~/.julia/packages/PyBoltz/VJsW0/src/predict.jl:70 [inlined] [10] predict @ ~/.julia/packages/PyBoltz/VJsW0/src/predict.jl:69 [inlined] [11] (::BioStructuresExt.var"#4#5"{@Kwargs{seed::Int64, accelerator::String}, Vector{MolecularInput}})(out_dir::String) @ BioStructuresExt ~/.julia/packages/PyBoltz/VJsW0/ext/BioStructuresExt.jl:15 [12] mktempdir(fn::BioStructuresExt.var"#4#5"{@Kwargs{seed::Int64, accelerator::String}, Vector{MolecularInput}}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:899 [13] mktempdir (repeats 2 times) @ ./file.jl:895 [inlined] [14] #predict#1 @ ~/.julia/packages/PyBoltz/VJsW0/ext/BioStructuresExt.jl:14 [inlined] [15] predict @ ~/.julia/packages/PyBoltz/VJsW0/ext/BioStructuresExt.jl:13 [inlined] [16] (::var"#8#9")(dir::String) @ Main ~/.julia/packages/PyBoltz/VJsW0/test/runtests.jl:60 [17] mktempdir(fn::var"#8#9", parent::String; prefix::String) @ Base.Filesystem ./file.jl:899 [18] mktempdir(fn::Function, parent::String) @ Base.Filesystem ./file.jl:895 [19] top-level scope @ ~/.julia/packages/PyBoltz/VJsW0/test/runtests.jl:17 [20] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [21] macro expansion @ ~/.julia/packages/PyBoltz/VJsW0/test/runtests.jl:33 [inlined] [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [23] macro expansion @ ~/.julia/packages/PyBoltz/VJsW0/test/runtests.jl:33 [inlined] [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [25] top-level scope @ none:6 [26] eval(m::Module, e::Any) @ Core ./boot.jl:489 [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:290 [28] _start() @ Base ./client.jl:557 Traceback (most recent call last): File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/bin/boltz", line 4, in from boltz.main import cli File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/boltz/main.py", line 24, in from boltz.model.model import Boltz1 File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/boltz/model/model.py", line 27, in from boltz.model.modules.confidence import ConfidenceModule File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/boltz/model/modules/confidence.py", line 12, in from boltz.model.modules.trunk import ( File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/boltz/model/modules/trunk.py", line 13, in from boltz.model.layers.triangular_attention.attention import ( File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/boltz/model/layers/triangular_attention/attention.py", line 22, in from boltz.model.layers.triangular_attention.primitives import ( File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/boltz/model/layers/triangular_attention/primitives.py", line 48, in from trifast import triangle_attention File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/trifast/__init__.py", line 1, in from trifast.torch import triangle_attention File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/trifast/torch.py", line 9, in from trifast.triton import ( File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/trifast/triton.py", line 4, in from trifast.autotune import autotune File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/trifast/autotune.py", line 13, in from trifast.autotune_helpers import ( File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/trifast/autotune_helpers.py", line 16, in device_capability = torch.cuda.get_device_capability() ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/torch/cuda/__init__.py", line 560, in get_device_capability prop = get_device_properties(device) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/torch/cuda/__init__.py", line 576, in get_device_properties _lazy_init() # will define _get_device_properties ^^^^^^^^^^^^ File "/tmp/jl_H0zQIT/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/torch/cuda/__init__.py", line 372, in _lazy_init torch._C._cuda_init() RuntimeError: Found no NVIDIA driver on your system. Please check that you have an NVIDIA GPU and installed a driver from http://www.nvidia.com/Download/index.aspx MSA run: Error During Test at /home/pkgeval/.julia/packages/PyBoltz/VJsW0/test/runtests.jl:70 Got exception outside of a @test failed process: Process(`boltz predict /tmp/jl_ZjTIr2/inputs --cache /home/pkgeval/.julia/scratchspaces/0bca4874-a2b8-4dca-bc03-d2d86e344f1f/boltz_cache --out_dir /tmp/jl_NHldvR --output_format mmcif --seed 0 --accelerator cpu`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run @ ./process.jl:514 [inlined] [4] predict(input_path::String; verbose::Bool, _prefix_index::Bool, options::@Kwargs{out_dir::String, output_format::String, seed::Int64, accelerator::String}) @ PyBoltz ~/.julia/packages/PyBoltz/VJsW0/src/predict.jl:59 [5] predict @ ~/.julia/packages/PyBoltz/VJsW0/src/predict.jl:55 [inlined] [6] (::PyBoltz.var"#7#8"{Bool, @Kwargs{out_dir::String, output_format::String, seed::Int64, accelerator::String}, Vector{MolecularInput}})(dir::String) @ PyBoltz ~/.julia/packages/PyBoltz/VJsW0/src/predict.jl:81 [7] mktempdir(fn::PyBoltz.var"#7#8"{Bool, @Kwargs{out_dir::String, output_format::String, seed::Int64, accelerator::String}, Vector{MolecularInput}}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:899 [8] mktempdir (repeats 2 times) @ ./file.jl:895 [inlined] [9] #predict#5 @ ~/.julia/packages/PyBoltz/VJsW0/src/predict.jl:70 [inlined] [10] predict @ ~/.julia/packages/PyBoltz/VJsW0/src/predict.jl:69 [inlined] [11] (::BioStructuresExt.var"#4#5"{@Kwargs{seed::Int64, accelerator::String}, Vector{MolecularInput}})(out_dir::String) @ BioStructuresExt ~/.julia/packages/PyBoltz/VJsW0/ext/BioStructuresExt.jl:15 [12] mktempdir(fn::BioStructuresExt.var"#4#5"{@Kwargs{seed::Int64, accelerator::String}, Vector{MolecularInput}}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:899 [13] mktempdir (repeats 2 times) @ ./file.jl:895 [inlined] [14] #predict#1 @ ~/.julia/packages/PyBoltz/VJsW0/ext/BioStructuresExt.jl:14 [inlined] [15] predict @ ~/.julia/packages/PyBoltz/VJsW0/ext/BioStructuresExt.jl:13 [inlined] [16] predict(input::MolecularInput, ::Type{MolecularStructure}; options::@Kwargs{seed::Int64, accelerator::String}) @ BioStructuresExt ~/.julia/packages/PyBoltz/VJsW0/ext/BioStructuresExt.jl:44 [17] predict @ ~/.julia/packages/PyBoltz/VJsW0/ext/BioStructuresExt.jl:43 [inlined] [18] (::var"#12#13")(dir::String) @ Main ~/.julia/packages/PyBoltz/VJsW0/test/runtests.jl:77 [19] mktempdir(fn::var"#12#13", parent::String; prefix::String) @ Base.Filesystem ./file.jl:899 [20] mktempdir(fn::Function, parent::String) @ Base.Filesystem ./file.jl:895 [21] top-level scope @ ~/.julia/packages/PyBoltz/VJsW0/test/runtests.jl:17 [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [23] macro expansion @ ~/.julia/packages/PyBoltz/VJsW0/test/runtests.jl:71 [inlined] [24] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [25] macro expansion @ ~/.julia/packages/PyBoltz/VJsW0/test/runtests.jl:71 [inlined] [26] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [27] top-level scope @ none:6 [28] eval(m::Module, e::Any) @ Core ./boot.jl:489 [29] exec_options(opts::Base.JLOptions) @ Base ./client.jl:290 [30] _start() @ Base ./client.jl:557 Test Summary: | Error Total Time PyBoltz.jl | 3 3 1m27.7s Single structure run | 1 1 1m06.0s Directory run | 1 1 11.2s MSA run | 1 1 10.4s RNG of the outermost testset: Random.Xoshiro(0xb49d5db9ca16eb43, 0xf9c1477972da723f, 0xc8c131be5f0923db, 0xe4ce08045a5ee352, 0xcf4964fc766c2c85) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 3 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PyBoltz/VJsW0/test/runtests.jl:15 Testing failed after 197.49s ERROR: LoadError: Package PyBoltz errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2421 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2276 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:498 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:309 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:324 [12] _start() @ Base ./client.jl:557 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 433.25s: package tests unexpectedly errored