Package evaluation of OnlinePCA on Julia 1.13.0-DEV.725 (d6294ba973*) started at 2025-06-10T21:39:43.884


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.94s


################################################################################
# Installation
#

Installing OnlinePCA...
   Resolving package versions...
   Installed Rmath_jll ─────────────────── v0.5.1+0
   Installed InlineStrings ─────────────── v1.4.3
   Installed CodecZstd ─────────────────── v0.8.6
   Installed FillArrays ────────────────── v1.13.0
   Installed GLM ───────────────────────── v1.9.0
   Installed StatsModels ───────────────── v0.7.4
   Installed libaec_jll ────────────────── v1.1.3+0
   Installed MPICH_jll ─────────────────── v4.3.0+1
   Installed HypergeometricFunctions ───── v0.3.28
   Installed DelimitedFiles ────────────── v1.9.1
   Installed DataStructures ────────────── v0.18.22
   Installed CodecZlib ─────────────────── v0.7.8
   Installed ShiftedArrays ─────────────── v2.0.0
   Installed MicrosoftMPI_jll ──────────── v10.1.4+3
   Installed AliasTables ───────────────── v1.1.3
   Installed Compat ────────────────────── v4.16.0
   Installed IteratorInterfaceExtensions ─ v1.0.0
   Installed InvertedIndices ───────────── v1.3.1
   Installed PrecompileTools ───────────── v1.3.2
   Installed OrderedCollections ────────── v1.8.1
   Installed StatsBase ─────────────────── v0.34.5
   Installed TranscodingStreams ────────── v0.11.3
   Installed DataValueInterfaces ───────── v1.0.0
   Installed ProgressMeter ─────────────── v1.10.4
   Installed SentinelArrays ────────────── v1.4.8
   Installed TextWrap ──────────────────── v1.0.2
   Installed StatsAPI ──────────────────── v1.7.1
   Installed DataAPI ───────────────────── v1.16.0
   Installed IrrationalConstants ───────── v0.2.4
   Installed Statistics ────────────────── v1.11.1
   Installed StringManipulation ────────── v0.4.1
   Installed QuadGK ────────────────────── v2.11.2
   Installed HDF5_jll ──────────────────── v1.14.6+0
   Installed ArgParse ──────────────────── v1.2.0
   Installed Requires ──────────────────── v1.3.1
   Installed OpenSpecFun_jll ───────────── v0.5.6+0
   Installed OnlinePCA ─────────────────── v0.3.9
   Installed Hwloc_jll ─────────────────── v2.12.1+0
   Installed LogExpFunctions ───────────── v0.3.29
   Installed OpenMPI_jll ───────────────── v5.0.7+2
   Installed PrettyTables ──────────────── v2.4.0
   Installed Rmath ─────────────────────── v0.8.0
   Installed Reexport ──────────────────── v1.2.2
   Installed PtrArrays ─────────────────── v1.3.0
   Installed MatrixMarket ──────────────── v0.5.2
   Installed Tables ────────────────────── v1.12.1
   Installed StatsFuns ─────────────────── v1.5.0
   Installed DataFrames ────────────────── v1.7.0
   Installed SpecialFunctions ──────────── v2.5.1
   Installed Distributions ─────────────── v0.25.120
   Installed Preferences ───────────────── v1.4.3
   Installed MPIPreferences ────────────── v0.1.11
   Installed PooledArrays ──────────────── v1.4.3
   Installed JLLWrappers ───────────────── v1.7.0
   Installed TableTraits ───────────────── v1.0.1
   Installed LaTeXStrings ──────────────── v1.4.0
   Installed Crayons ───────────────────── v4.1.1
   Installed Missings ──────────────────── v1.2.0
   Installed MPItrampoline_jll ─────────── v5.5.3+0
   Installed DocStringExtensions ───────── v0.9.5
   Installed HDF5 ──────────────────────── v0.17.2
   Installed PDMats ────────────────────── v0.11.35
   Installed SortingAlgorithms ─────────── v1.2.1
  Installing 6 artifacts
   Installed artifact Rmath       121.9 KiB
   Installed artifact libaec      96.2 KiB
   Installed artifact OpenSpecFun 194.9 KiB
   Installed artifact Hwloc       3.5 MiB
   Installed artifact MPICH       3.3 MiB
   Installed artifact HDF5        5.7 MiB
    Updating `~/.julia/environments/v1.13/Project.toml`
  [975b03d1] + OnlinePCA v0.3.9
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [c7e460c6] + ArgParse v1.2.0
  [944b1d66] + CodecZlib v0.7.8
  [6b39b394] + CodecZstd v0.8.6
  [34da2185] + Compat v4.16.0
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [8bb1440f] + DelimitedFiles v1.9.1
  [31c24e10] + Distributions v0.25.120
  [ffbed154] + DocStringExtensions v0.9.5
  [1a297f60] + FillArrays v1.13.0
  [38e38edf] + GLM v1.9.0
  [f67ccb44] + HDF5 v0.17.2
  [34004b35] + HypergeometricFunctions v0.3.28
  [842dd82b] + InlineStrings v1.4.3
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [b964fa9f] + LaTeXStrings v1.4.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [3da0fdf6] + MPIPreferences v0.1.11
  [4d4711f2] + MatrixMarket v0.5.2
  [e1d29d7a] + Missings v1.2.0
  [975b03d1] + OnlinePCA v0.3.9
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.35
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
  [92933f4c] + ProgressMeter v1.10.4
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.8.0
  [91c51154] + SentinelArrays v1.4.8
  [1277b4bf] + ShiftedArrays v2.0.0
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.1
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
  [2913bbd2] + StatsBase v0.34.5
  [4c63d2b9] + StatsFuns v1.5.0
  [3eaba693] + StatsModels v0.7.4
  [892a3eda] + StringManipulation v0.4.1
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [b718987f] + TextWrap v1.0.2
  [3bb67fe8] + TranscodingStreams v0.11.3
  [0234f1f7] + HDF5_jll v1.14.6+0
  [e33a78d0] + Hwloc_jll v2.12.1+0
  [7cb0a576] + MPICH_jll v4.3.0+1
  [f1f71cc9] + MPItrampoline_jll v5.5.3+0
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] + OpenMPI_jll v5.0.7+2
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [477f73a3] + libaec_jll v1.1.3+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.12.1+1
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.5.20
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.5+0
  [458c3c95] + OpenSSL_jll v3.5.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.12.0+0
  [8e850ede] + nghttp2_jll v1.65.0+0
  [3f19e933] + p7zip_jll v17.5.0+2

Installation completed after 13.1s


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# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
   4678.4 ms  ✓ TestEnv
  1 dependency successfully precompiled in 5 seconds. 25 already precompiled.

Precompiling package dependencies...

Precompilation completed after 288.92s


################################################################################
# Testing
#

     Testing OnlinePCA
        Test Could not use exact versions of packages in manifest. Re-resolving dependencies
    Updating `/tmp/jl_iL0Kzt/Project.toml`
  [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.120
  [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.13.0
  [975b03d1] + OnlinePCA v0.3.9
  [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1
  [37e2e46d] ~ LinearAlgebra ⇒ v1.12.0
  [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.12.0
  [8dfed614] ~ Test ⇒ v1.11.0
    Updating `/tmp/jl_iL0Kzt/Manifest.toml`
  [944b1d66] ↑ CodecZlib v0.7.6 ⇒ v0.7.8
  [6b39b394] + CodecZstd v0.8.6
  [a8cc5b0e] + Crayons v4.1.1
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] ↑ DataStructures v0.18.20 ⇒ v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.120
  [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5
  [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.13.0
  [38e38edf] + GLM v1.9.0
  [f67ccb44] + HDF5 v0.17.2
  [34004b35] ↑ HypergeometricFunctions v0.3.24 ⇒ v0.3.28
  [842dd82b] + InlineStrings v1.4.3
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] ↑ JLLWrappers v1.5.0 ⇒ v1.7.0
  [b964fa9f] + LaTeXStrings v1.4.0
  [2ab3a3ac] ↑ LogExpFunctions v0.3.28 ⇒ v0.3.29
  [3da0fdf6] + MPIPreferences v0.1.11
  [975b03d1] + OnlinePCA v0.3.9
  [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.1
  [90014a1f] ↑ PDMats v0.11.31 ⇒ v0.11.35
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.2
  [08abe8d2] + PrettyTables v2.4.0
  [92933f4c] + ProgressMeter v1.10.4
  [43287f4e] ↑ PtrArrays v1.2.0 ⇒ v1.3.0
  [1fd47b50] ↑ QuadGK v2.10.1 ⇒ v2.11.2
  [ae029012] + Requires v1.3.1
  [79098fc4] ↑ Rmath v0.7.1 ⇒ v0.8.0
  [91c51154] + SentinelArrays v1.4.8
  [1277b4bf] + ShiftedArrays v2.0.0
  [276daf66] ↑ SpecialFunctions v2.4.0 ⇒ v2.5.1
  [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1
  [82ae8749] ↑ StatsAPI v1.7.0 ⇒ v1.7.1
  [2913bbd2] ↑ StatsBase v0.34.3 ⇒ v0.34.5
  [4c63d2b9] ↑ StatsFuns v1.3.1 ⇒ v1.5.0
  [3eaba693] + StatsModels v0.7.4
  [892a3eda] + StringManipulation v0.4.1
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [3bb67fe8] ↑ TranscodingStreams v0.11.2 ⇒ v0.11.3
  [0234f1f7] + HDF5_jll v1.14.6+0
  [e33a78d0] + Hwloc_jll v2.12.1+0
  [7cb0a576] + MPICH_jll v4.3.0+1
  [f1f71cc9] + MPItrampoline_jll v5.5.3+0
  [c8ffd9c3] - MbedTLS_jll v2.28.2+1
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] + OpenMPI_jll v5.0.7+2
  [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0
  [f50d1b31] ↑ Rmath_jll v0.4.3+0 ⇒ v0.5.1+0
  [477f73a3] + libaec_jll v1.1.3+0
  [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2
  [56f22d72] ~ Artifacts ⇒ v1.11.0
  [2a0f44e3] ~ Base64 ⇒ v1.11.0
  [ade2ca70] ~ Dates ⇒ v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0
  [7b1f6079] ~ FileWatching ⇒ v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [76f85450] ~ LibGit2 ⇒ v1.11.0
  [8f399da3] ~ Libdl ⇒ v1.11.0
  [37e2e46d] ~ LinearAlgebra ⇒ v1.12.0
  [56ddb016] ~ Logging ⇒ v1.11.0
  [d6f4376e] ~ Markdown ⇒ v1.11.0
  [a63ad114] ~ Mmap ⇒ v1.11.0
  [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0
  [44cfe95a] ↑ Pkg v1.10.0 ⇒ v1.13.0
  [de0858da] ~ Printf ⇒ v1.11.0
  [3fa0cd96] ~ REPL ⇒ v1.11.0
  [9a3f8284] ~ Random ⇒ v1.11.0
  [9e88b42a] ~ Serialization ⇒ v1.11.0
  [6462fe0b] ~ Sockets ⇒ v1.11.0
  [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [8dfed614] ~ Test ⇒ v1.11.0
  [cf7118a7] ~ UUIDs ⇒ v1.11.0
  [4ec0a83e] ~ Unicode ⇒ v1.11.0
  [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.3.0+1
  [deac9b47] ↑ LibCURL_jll v8.4.0+0 ⇒ v8.12.1+1
  [e37daf67] ↑ LibGit2_jll v1.6.4+0 ⇒ v1.9.0+0
  [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1
  [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2025.5.20
  [4536629a] ↑ OpenBLAS_jll v0.3.23+4 ⇒ v0.3.29+0
  [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.5+0
  [458c3c95] + OpenSSL_jll v3.5.0+0
  [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.10.1+0
  [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.12.0+0
  [8e850ede] ↑ nghttp2_jll v1.52.0+1 ⇒ v1.65.0+0
  [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.5.0+2
        Test Successfully re-resolved
      Status `/tmp/jl_iL0Kzt/Project.toml`
  [c7e460c6] ArgParse v1.2.0
  [8bb1440f] DelimitedFiles v1.9.1
  [31c24e10] Distributions v0.25.120
  [1a297f60] FillArrays v1.13.0
  [4d4711f2] MatrixMarket v0.5.2
  [975b03d1] OnlinePCA v0.3.9
  [10745b16] Statistics v1.11.1
  [37e2e46d] LinearAlgebra v1.12.0
  [2f01184e] SparseArrays v1.12.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_iL0Kzt/Manifest.toml`
  [66dad0bd] AliasTables v1.1.3
  [c7e460c6] ArgParse v1.2.0
  [944b1d66] CodecZlib v0.7.8
  [6b39b394] CodecZstd v0.8.6
  [34da2185] Compat v4.16.0
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.7.0
  [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [8bb1440f] DelimitedFiles v1.9.1
  [31c24e10] Distributions v0.25.120
  [ffbed154] DocStringExtensions v0.9.5
  [1a297f60] FillArrays v1.13.0
  [38e38edf] GLM v1.9.0
  [f67ccb44] HDF5 v0.17.2
  [34004b35] HypergeometricFunctions v0.3.28
  [842dd82b] InlineStrings v1.4.3
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.4
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.0
  [b964fa9f] LaTeXStrings v1.4.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [3da0fdf6] MPIPreferences v0.1.11
  [4d4711f2] MatrixMarket v0.5.2
  [e1d29d7a] Missings v1.2.0
  [975b03d1] OnlinePCA v0.3.9
  [bac558e1] OrderedCollections v1.8.1
  [90014a1f] PDMats v0.11.35
  [2dfb63ee] PooledArrays v1.4.3
  [aea7be01] PrecompileTools v1.3.2
  [21216c6a] Preferences v1.4.3
  [08abe8d2] PrettyTables v2.4.0
  [92933f4c] ProgressMeter v1.10.4
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [79098fc4] Rmath v0.8.0
  [91c51154] SentinelArrays v1.4.8
  [1277b4bf] ShiftedArrays v2.0.0
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.1
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.1
  [2913bbd2] StatsBase v0.34.5
  [4c63d2b9] StatsFuns v1.5.0
  [3eaba693] StatsModels v0.7.4
  [892a3eda] StringManipulation v0.4.1
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [b718987f] TextWrap v1.0.2
  [3bb67fe8] TranscodingStreams v0.11.3
  [0234f1f7] HDF5_jll v1.14.6+0
  [e33a78d0] Hwloc_jll v2.12.1+0
  [7cb0a576] MPICH_jll v4.3.0+1
  [f1f71cc9] MPItrampoline_jll v5.5.3+0
  [9237b28f] MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] OpenMPI_jll v5.0.7+2
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [477f73a3] libaec_jll v1.1.3+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.13.0
  [de0858da] Printf v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.12.1+1
  [e37daf67] LibGit2_jll v1.9.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.5.20
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.5+0
  [458c3c95] OpenSSL_jll v3.5.0+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.1+2
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.12.0+0
  [8e850ede] nghttp2_jll v1.65.0+0
  [3f19e933] p7zip_jll v17.5.0+2
     Testing Running tests...
/tmp/jl_16xbx0
Running all tests...
####### Binarization of CSV (Julia API) #######

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####### Binarization of CSV (Command line) #######
Precompiling packages...
   1163.8 ms  ✓ ShiftedArrays
    881.4 ms  ✓ TextWrap
   1274.6 ms  ✓ TranscodingStreams
    829.4 ms  ✓ PtrArrays
   1337.0 ms  ✓ OrderedCollections
    875.4 ms  ✓ IteratorInterfaceExtensions
   4201.2 ms  ✓ Crayons
   1144.6 ms  ✓ Statistics
    806.3 ms  ✓ Reexport
   1198.9 ms  ✓ DocStringExtensions
   1924.8 ms  ✓ FillArrays
    778.9 ms  ✓ DataValueInterfaces
    873.6 ms  ✓ DataAPI
   3626.4 ms  ✓ IrrationalConstants
   1566.0 ms  ✓ InlineStrings
    862.1 ms  ✓ LaTeXStrings
   1184.6 ms  ✓ SuiteSparse
    879.6 ms  ✓ InvertedIndices
    822.2 ms  ✓ StatsAPI
    968.9 ms  ✓ DelimitedFiles
   1871.1 ms  ✓ Requires
   1765.2 ms  ✓ ProgressMeter
   6123.9 ms  ✓ SentinelArrays
   3985.2 ms  ✓ Preferences
   1194.3 ms  ✓ Compat
   2169.9 ms  ✓ ArgParse
    993.1 ms  ✓ CodecZlib
   2120.5 ms  ✓ CodecZstd
    993.3 ms  ✓ AliasTables
    774.4 ms  ✓ TableTraits
   1278.1 ms  ✓ Statistics → SparseArraysExt
   1506.0 ms  ✓ FillArrays → FillArraysSparseArraysExt
    923.4 ms  ✓ FillArrays → FillArraysStatisticsExt
   1016.3 ms  ✓ PooledArrays
   1033.9 ms  ✓ Missings
   1353.9 ms  ✓ LogExpFunctions
   1778.7 ms  ✓ PDMats
   1338.8 ms  ✓ MPIPreferences
   1175.2 ms  ✓ JLLWrappers
    962.7 ms  ✓ PrecompileTools
    858.9 ms  ✓ Compat → CompatLinearAlgebraExt
   1303.4 ms  ✓ MatrixMarket
   1714.8 ms  ✓ Tables
   1386.1 ms  ✓ FillArrays → FillArraysPDMatsExt
   4878.7 ms  ✓ MPItrampoline_jll
   1221.8 ms  ✓ MicrosoftMPI_jll
   1497.5 ms  ✓ OpenSpecFun_jll
   1637.9 ms  ✓ libaec_jll
   1516.6 ms  ✓ Rmath_jll
   1564.8 ms  ✓ Hwloc_jll
   6277.9 ms  ✓ StringManipulation
   4391.5 ms  ✓ DataStructures
   5951.0 ms  ✓ SpecialFunctions
   1622.1 ms  ✓ Rmath
   4813.9 ms  ✓ OpenMPI_jll
   5385.0 ms  ✓ MPICH_jll
  62308.1 ms  ✓ PrettyTables
   2990.4 ms  ✓ QuadGK
   1867.7 ms  ✓ SortingAlgorithms
   2230.4 ms  ✓ HypergeometricFunctions
   7298.5 ms  ✓ HDF5_jll
   6045.7 ms  ✓ StatsBase
 199336.5 ms  ✓ DataFrames
   4331.5 ms  ✓ StatsFuns
  23293.7 ms  ✓ HDF5
   5002.2 ms  ✓ StatsModels
  10553.7 ms  ✓ Distributions
   3671.3 ms  ✓ Distributions → DistributionsTestExt
   5245.2 ms  ✓ GLM
  17106.4 ms  ✓ OnlinePCA
  70 dependencies successfully precompiled in 459 seconds. 38 already precompiled.
Parsed args:
  csvfile  =>  /tmp/jl_16xbx0/Data.csv
  binfile  =>  /tmp/jl_16xbx0/Data.zst

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####### Binarization of MM (Julia API) #######
####### Binarization of MM (Command line) #######
Parsed args:
  binfile  =>  /tmp/jl_16xbx0/Data.mtx.zst
  mmfile  =>  /tmp/jl_16xbx0/Data.mtx
####### Binarization of Binary COO (Julia API) #######
####### Binarization of Binary COO (Command line) #######
Parsed args:
  binfile  =>  /tmp/jl_16xbx0/Data.bincoo.zst
  bincoofile  =>  /tmp/jl_16xbx0/Data.bincoo
####### Summarization (Julia API) #######
1 / 2 : Column-wise statistics are calculated...
2 / 2 : Row-wise statistics are calculated...
####### Summarization (Command line) #######
Parsed args:
  outdir  =>  /tmp/jl_qUAelE
  binfile  =>  /tmp/jl_16xbx0/Data.zst
  pseudocount  =>  1.0
  mode  =>  dense
1 / 2 : Column-wise statistics are calculated...
2 / 2 : Row-wise statistics are calculated...
####### Summarization (Julia API) #######
1 / 2 : Column-wise statistics are calculated...
2 / 2 : Row-wise statistics are calculated...
####### Summarization (Command line) #######
Parsed args:
  outdir  =>  /tmp/jl_nBbSIq
  binfile  =>  /tmp/jl_16xbx0/Data.mtx.zst
  pseudocount  =>  1.0
  mode  =>  sparse_mm
1 / 2 : Column-wise statistics are calculated...
2 / 2 : Row-wise statistics are calculated...
####### HVG (Julia API) #######
Highly Variable Genes are calculated...
####### HVG (Command line) #######
Parsed args:
  rowcv2list  =>  /tmp/jl_qUAelE/Feature_CV2s.csv
  outdir  =>  /tmp/jl_qUAelE
  binfile  =>  /tmp/jl_16xbx0/Data.zst
  rowvarlist  =>  /tmp/jl_qUAelE/Feature_Vars.csv
  rowmeanlist  =>  /tmp/jl_qUAelE/Feature_Means.csv
Highly Variable Genes are calculated...
####### Filtering (Julia API) #######



####### Filtering (Command line) #######
Parsed args:
  input  =>  /tmp/jl_16xbx0/Data.zst
  direct1  =>  +
  outdir  =>  /tmp/jl_qUAelE
  direct2  =>  +
  thr2  =>  10
  samplelist  =>  /tmp/jl_qUAelE/Sample_NoCounts.csv
  featurelist  =>  /tmp/jl_qUAelE/Feature_Means.csv
  thr1  =>  10

Parsed args:
  input  =>  /tmp/jl_16xbx0/Data.zst
  direct1  =>  +
  outdir  =>  /tmp/jl_qUAelE
  direct2  =>  +
  thr2  =>  10
  samplelist  =>  
  featurelist  =>  /tmp/jl_qUAelE/Feature_Means.csv
  thr1  =>  10

Parsed args:
  input  =>  /tmp/jl_16xbx0/Data.zst
  direct1  =>  +
  outdir  =>  /tmp/jl_qUAelE
  direct2  =>  +
  thr2  =>  10
  samplelist  =>  /tmp/jl_qUAelE/Sample_NoCounts.csv
  featurelist  =>  
  thr1  =>  10

####### GD (Julia API) #######
####### GD (Command line) #######
Parsed args:
  scheduling  =>  "robbins-monro"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6
Parsed args:
  scheduling  =>  "momentum"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  "/tmp/jl_qUAelE/Eigen_vectors.csv"
  lower  =>  0
  offsetStoch  =>  1.0f-6
Parsed args:
  scheduling  =>  "nag"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  "/tmp/jl_qUAelE/Loadings.csv"
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6
Parsed args:
  scheduling  =>  "adagrad"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6
####### Oja (Julia API) #######

Progress:   1%|▎                                        |  ETA: 0:02:43
Progress:   1%|▍                                        |  ETA: 0:03:00
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01

Progress:   1%|▎                                        |  ETA: 0:02:36
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01

Progress:   1%|▎                                        |  ETA: 0:02:39
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01

Progress:   1%|▎                                        |  ETA: 0:03:30
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01
####### Oja (Command line) #######
Parsed args:
  scheduling  =>  "robbins-monro"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:06:01
Progress:   1%|▌                                        |  ETA: 0:03:38
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02
Parsed args:
  scheduling  =>  "momentum"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:06:52
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
Parsed args:
  scheduling  =>  "nag"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:08:45
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
Parsed args:
  scheduling  =>  "adagrad"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:07:31
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
####### SGD (Julia API) #######

Progress:   1%|▎                                        |  ETA: 0:02:49
Progress:   1%|▍                                        |  ETA: 0:03:34
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02

Progress:   1%|▎                                        |  ETA: 0:03:45
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01

Progress:   1%|▎                                        |  ETA: 0:04:13
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01

Progress:   1%|▎                                        |  ETA: 0:04:13
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01
####### SGD (Command line) #######
Parsed args:
  scheduling  =>  "robbins-monro"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:06:06
Progress:   1%|▍                                        |  ETA: 0:05:02
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
Parsed args:
  scheduling  =>  "momentum"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:07:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
Parsed args:
  scheduling  =>  "nag"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:09:07
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
Parsed args:
  scheduling  =>  "adagrad"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:08:18
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
####### CCIPCA (Julia API) #######

Progress:   1%|▎                                        |  ETA: 0:01:53
Progress:   1%|▍                                        |  ETA: 0:02:21
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01
####### CCIPCA (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-15

Progress:   1%|▎                                        |  ETA: 0:08:36
Progress:   1%|▍                                        |  ETA: 0:07:08
Progress: 100%|█████████████████████████████████████████| Time: 0:00:04
####### RSGD (Julia API) #######

Progress:   1%|▎                                        |  ETA: 0:15:19
Progress:   1%|▍                                        |  ETA: 0:11:57
Progress: 100%|█████████████████████████████████████████| Time: 0:00:07

Progress:   1%|▎                                        |  ETA: 0:04:03
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01

Progress:   1%|▎                                        |  ETA: 0:05:12
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02

Progress:   1%|▎                                        |  ETA: 0:04:13
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01
####### RSGD (Command line) #######
Parsed args:
  scheduling  =>  "robbins-monro"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:12:06
Progress:   1%|▍                                        |  ETA: 0:09:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:05
Parsed args:
  scheduling  =>  "momentum"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:12:48
Progress: 100%|█████████████████████████████████████████| Time: 0:00:05
Parsed args:
  scheduling  =>  "nag"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:13:30
Progress: 100%|█████████████████████████████████████████| Time: 0:00:05
Parsed args:
  scheduling  =>  "adagrad"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:14:08
Progress: 100%|█████████████████████████████████████████| Time: 0:00:05
####### SVRG (Julia API) #######

Progress:   1%|▎                                        |  ETA: 0:04:52
Progress:   1%|▍                                        |  ETA: 0:05:27
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03

Progress:   1%|▎                                        |  ETA: 0:05:44
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02

Progress:   1%|▎                                        |  ETA: 0:08:37
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03

Progress:   1%|▎                                        |  ETA: 0:07:11
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02
####### SVRG (Command line) #######
Parsed args:
  scheduling  =>  "robbins-monro"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:11:49
Progress:   1%|▍                                        |  ETA: 0:09:12
Progress: 100%|█████████████████████████████████████████| Time: 0:00:05
Parsed args:
  scheduling  =>  "momentum"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:15:20
Progress: 100%|█████████████████████████████████████████| Time: 0:00:06
Parsed args:
  scheduling  =>  "nag"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:18:32
Progress: 100%|█████████████████████████████████████████| Time: 0:00:07
Parsed args:
  scheduling  =>  "adagrad"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:17:38
Progress: 100%|█████████████████████████████████████████| Time: 0:00:07
####### RSVRG (Julia API) #######

Progress:   1%|▎                                        |  ETA: 0:04:12
Progress:   1%|▍                                        |  ETA: 0:05:03
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03

Progress:   1%|▎                                        |  ETA: 0:04:07
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01

Progress:   1%|▎                                        |  ETA: 0:07:52
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03

Progress:   1%|▎                                        |  ETA: 0:07:21
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02
####### RSVRG (Command line) #######
Parsed args:
  scheduling  =>  "robbins-monro"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:18:54
Progress:   1%|▍                                        |  ETA: 0:14:13
Progress: 100%|█████████████████████████████████████████| Time: 0:00:08
Parsed args:
  scheduling  =>  "momentum"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:22:10
Progress: 100%|█████████████████████████████████████████| Time: 0:00:09
Parsed args:
  scheduling  =>  "nag"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:23:16
Progress: 100%|█████████████████████████████████████████| Time: 0:00:09
Parsed args:
  scheduling  =>  "adagrad"
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:23:19
Progress: 100%|█████████████████████████████████████████| Time: 0:00:09
####### Orthogonal Iteration (Julia API) #######

Progress:   0%|▏                                        |  ETA: 0:05:59
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01
####### Orthogonal Iteration (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  numepoch  =>  "3"
  expvar  =>  0.1f0
  perm  =>  false
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0

Progress:   0%|▏                                        |  ETA: 0:21:23
Progress:  33%|█████████████▊                           |  ETA: 0:00:09
Progress: 100%|█████████████████████████████████████████| Time: 0:00:05
####### Randomized Block Krylov Iteration (Julia API) #######

Progress:  33%|█████████████▊                           |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
Q' A
Q' A' A
svd(Q' A' A)
Q*U
####### Randomized Block Krylov Iteration (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  numepoch  =>  "3"
  expvar  =>  0.1f0
  perm  =>  false
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0

Progress:   0%|▏                                        |  ETA: 0:20:39
Progress:  33%|█████████████▊                           |  ETA: 0:00:08
Progress: 100%|█████████████████████████████████████████| Time: 0:00:05
Q' A
Q' A' A
svd(Q' A' A)
Q*U
####### ARNOLDI (Julia API) #######

Progress:  20%|████████▎                                |  ETA: 0:00:02
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
####### ARNOLDI (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  cper  =>  1.0f0
  scale  =>  "ftt"
  numepoch  =>  "3"
  expvar  =>  0.1f0
  perm  =>  false

Progress:  67%|███████████████████████████▍             |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
####### LANCZOS (Julia API) #######

Progress:  20%|████████▎                                |  ETA: 0:00:00
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
####### LANCZOS (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  cper  =>  1.0f0
  scale  =>  "ftt"
  numepoch  =>  "3"
  expvar  =>  0.1f0
  perm  =>  false

Progress:  67%|███████████████████████████▍             |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02
####### HALKO (Julia API) #######
Random Projection : Y = A Ω

Progress:   1%|▎                                        |  ETA: 0:01:02
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
QR factorization : Q = qr(Y)
Subspace iterations (1/2) : qr(A' Q)
qr(A' Q)
Subspace iterations (2/2) : Y = qr(A qr(A' Q))
Q = qr(Y)
Subspace iterations (1/2) : qr(A' Q)
qr(A' Q)
Subspace iterations (2/2) : Y = qr(A qr(A' Q))
Q = qr(Y)
Subspace iterations (1/2) : qr(A' Q)
qr(A' Q)
Subspace iterations (2/2) : Y = qr(A qr(A' Q))
Q = qr(Y)
Calculation of small matrix : B = Q' A
SVD with small matrix : svd(B)
####### HALKO (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  noversamples  =>  5
  cper  =>  1.0f0
  niter  =>  3
  scale  =>  "ftt"
  perm  =>  false
  initV  =>  nothing
  initW  =>  nothing
Random Projection : Y = A Ω

Progress:   1%|▎                                        |  ETA: 0:05:46
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02
QR factorization : Q = qr(Y)
Subspace iterations (1/2) : qr(A' Q)

Progress:   1%|▎                                        |  ETA: 0:01:49
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
qr(A' Q)
Subspace iterations (2/2) : Y = qr(A qr(A' Q))
Q = qr(Y)
Subspace iterations (1/2) : qr(A' Q)
qr(A' Q)
Subspace iterations (2/2) : Y = qr(A qr(A' Q))
Q = qr(Y)
Subspace iterations (1/2) : qr(A' Q)
qr(A' Q)
Subspace iterations (2/2) : Y = qr(A qr(A' Q))
Q = qr(Y)
Calculation of small matrix : B = Q' A
SVD with small matrix : svd(B)
####### ALGORITHM971 (Julia API) #######
Random Projection : Y = A Ω
LU factorization : L = lu(Y)
Normalized power iterations (1/3) : A' L
L = lu(A' L)
Normalized power iterations (2/3) : Y = A lu(A' L)
Normalized power iterations (3/3) : L = lu(A lu(A' L))
Normalized power iterations (1/3) : A' L
L = lu(A' L)
Normalized power iterations (2/3) : Y = A lu(A' L)
Normalized power iterations (3/3) : L = lu(A lu(A' L))
Normalized power iterations (1/3) : A' L
L = lu(A' L)
Normalized power iterations (2/3) : Y = A lu(A' L)
QR factorization  (3/3) : Q = qr(A lu(A' L))
Calculation of small matrix : B = Q' A
SVD with small matrix : svd(B)
####### ALGORITHM971 (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  noversamples  =>  5
  cper  =>  1.0f0
  niter  =>  3
  scale  =>  "ftt"
  perm  =>  false
  initV  =>  nothing
  initW  =>  nothing
Random Projection : Y = A Ω

Progress:   1%|▎                                        |  ETA: 0:05:49
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02
LU factorization : L = lu(Y)
Normalized power iterations (1/3) : A' L

Progress:   1%|▎                                        |  ETA: 0:01:50
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
L = lu(A' L)
Normalized power iterations (2/3) : Y = A lu(A' L)
Normalized power iterations (3/3) : L = lu(A lu(A' L))
Normalized power iterations (1/3) : A' L
L = lu(A' L)
Normalized power iterations (2/3) : Y = A lu(A' L)
Normalized power iterations (3/3) : L = lu(A lu(A' L))
Normalized power iterations (1/3) : A' L
L = lu(A' L)
Normalized power iterations (2/3) : Y = A lu(A' L)
QR factorization  (3/3) : Q = qr(A lu(A' L))
Calculation of small matrix : B = Q' A
SVD with small matrix : svd(B)
####### SINGLEPASS (Julia API) #######
Random Projection : Y = A Ω, Ytilde = A' Ωtilde
QR factorization : Q = qr(Y), Qtilde = qr(Ytilde)
Solve linear equation : Ωtilde' Q B = Ytilde' Qtilde for B
SVD with small matrix : svd(B)
####### SINGLEPASS (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  noversamples  =>  5
  cper  =>  1.0f0
  niter  =>  3
  scale  =>  "ftt"
  perm  =>  false
  initV  =>  nothing
  initW  =>  nothing
Random Projection : Y = A Ω, Ytilde = A' Ωtilde

Progress:   1%|▎                                        |  ETA: 0:02:25
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01
QR factorization : Q = qr(Y), Qtilde = qr(Ytilde)
Solve linear equation : Ωtilde' Q B = Ytilde' Qtilde for B
SVD with small matrix : svd(B)
####### SINGLEPASS2 (Julia API) #######
Random Projection : G = A Ω, H = A' A Ω
Subspace iterations (1/2) : Q = qr(Yi)
Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi))
Subspace iterations (1/2) : Q = qr(Yi)
Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi))
Subspace iterations (1/2) : Q = qr(Yi)
Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi))
SVD with small matrix : svd(B)
####### SINGLEPASS2 (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_qUAelE/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_qUAelE"
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  noversamples  =>  5
  cper  =>  1.0f0
  niter  =>  3
  scale  =>  "ftt"
  perm  =>  false
  initV  =>  nothing
  initW  =>  nothing
Random Projection : G = A Ω, H = A' A Ω

Progress:   1%|▎                                        |  ETA: 0:02:11
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01
Subspace iterations (1/2) : Q = qr(Yi)
Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi))
Subspace iterations (1/2) : Q = qr(Yi)
Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi))
Subspace iterations (1/2) : Q = qr(Yi)
Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi))
SVD with small matrix : svd(B)
####### Sparse Randomized SVD (Julia API) #######
Initial Setting...

Progress:  40%|████████████████▍                        |  ETA: 0:00:08
Progress: 100%|█████████████████████████████████████████| Time: 0:00:05
Random Projection : Y = A Ω

Progress:  40%|████████████████▍                        |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
LU factorization : L = lu(Y)
##### Iteration 1 / 3 #####
Normalized power iterations (1/3) : A' L

Progress:  40%|████████████████▍                        |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
Normalized power iterations (2/3) : A A' L
LU decomposition (3/3) : L = lu(A A' L)
##### Iteration 2 / 3 #####
Normalized power iterations (1/3) : A' L
Normalized power iterations (2/3) : A A' L
LU decomposition (3/3) : L = lu(A A' L)
##### Iteration 3 / 3 #####
Normalized power iterations (1/3) : A' L
Normalized power iterations (2/3) : A A' L
QR decomposition  (3/3) : Q = qr(A A' L)
Small matrix computation : B = Q' A

Progress:  40%|████████████████▍                        |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
SVD : B = U Σ V'
####### Sparse Randomized SVD (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_nBbSIq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_nBbSIq"
  input  =>  "/tmp/jl_16xbx0/Data.mtx.zst"
  outdir  =>  "/tmp/jl_nBbSIq"
  rowvarlist  =>  ""
  colsumlist  =>  ""
  noversamples  =>  5
  cper  =>  1.0f0
  niter  =>  3
  scale  =>  "ftt"
  chunksize  =>  "51"
  perm  =>  false
  initV  =>  nothing
  initW  =>  nothing
Initial Setting...

Progress:  40%|████████████████▍                        |  ETA: 0:00:06
Progress: 100%|█████████████████████████████████████████| Time: 0:00:04
Random Projection : Y = A Ω

Progress:  40%|████████████████▍                        |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
LU factorization : L = lu(Y)
##### Iteration 1 / 3 #####
Normalized power iterations (1/3) : A' L

Progress:  40%|████████████████▍                        |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
Normalized power iterations (2/3) : A A' L
LU decomposition (3/3) : L = lu(A A' L)
##### Iteration 2 / 3 #####
Normalized power iterations (1/3) : A' L
Normalized power iterations (2/3) : A A' L
LU decomposition (3/3) : L = lu(A A' L)
##### Iteration 3 / 3 #####
Normalized power iterations (1/3) : A' L
Normalized power iterations (2/3) : A A' L
QR decomposition  (3/3) : Q = qr(A A' L)
Small matrix computation : B = Q' A

Progress:  40%|████████████████▍                        |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
SVD : B = U Σ V'
####### Exact Out-of-Core PCA (Dense, Julia API) #######
# 1. Column-wise Mean
# 2. Out-of-Core Covariance Matrix Calculation

Progress:  2    Time: 0:00:00
Progress:  6    Time: 0:00:00
# 3. PC Score (Z = XV) is being calculated.
# 4. Out-of-Core PC Score Calculation
# 5. Delayed Centering Correction
# 6. Normalize W and Calculate Eigenvalues
####### Exact Out-of-Core PCA (Dense, Command line) #######
Parsed args:
  input  =>  "/tmp/jl_16xbx0/Data.zst"
  outdir  =>  "/tmp/jl_qUAelE"
  pseudocount  =>  1.0f0
  mode  =>  "dense"
  dim  =>  "3"
  chunksize  =>  "51"
  scale  =>  "raw"
# 1. Column-wise Mean
# 2. Out-of-Core Covariance Matrix Calculation

Progress:  2    Time: 0:00:00
Progress:  6    Time: 0:00:00
# 3. PC Score (Z = XV) is being calculated.
# 4. Out-of-Core PC Score Calculation
# 5. Delayed Centering Correction
# 6. Normalize W and Calculate Eigenvalues
####### Exact Out-of-Core PCA (MM-Sparse, Julia API) #######
# 1. Column-wise Mean
# 2. Out-of-Core Covariance Matrix Calculation

Progress:  2    Time: 0:00:02
Progress:  6    Time: 0:00:02
# 3. PC Score (Z = XV) is being calculated.
# 4. Out-of-Core PC Score Calculation

Progress:  2    Time: 0:00:00
Progress:  6    Time: 0:00:00
# 5. Delayed Centering Correction
# 6. Normalize W and Calculate Eigenvalues
####### Exact Out-of-Core PCA (MM-Sparse, Command line) #######
Parsed args:
  input  =>  "/tmp/jl_16xbx0/Data.mtx.zst"
  outdir  =>  "/tmp/jl_nBbSIq"
  pseudocount  =>  1.0f0
  mode  =>  "sparse_mm"
  dim  =>  "3"
  chunksize  =>  "51"
  scale  =>  "raw"
# 1. Column-wise Mean
# 2. Out-of-Core Covariance Matrix Calculation

Progress:  2    Time: 0:00:01
Progress:  6    Time: 0:00:01
# 3. PC Score (Z = XV) is being calculated.
# 4. Out-of-Core PC Score Calculation

Progress:  2    Time: 0:00:00
Progress:  6    Time: 0:00:00
# 5. Delayed Centering Correction
# 6. Normalize W and Calculate Eigenvalues
####### Exact Out-of-Core PCA (BinCOO-Sparse, Julia API) #######
# 1. Column-wise Mean
# 2. Out-of-Core Covariance Matrix Calculation
# 3. PC Score (Z = XV) is being calculated.
# 4. Out-of-Core PC Score Calculation

Progress:  2    Time: 0:00:01
Progress:  6    Time: 0:00:01
# 5. Delayed Centering Correction
# 6. Normalize W and Calculate Eigenvalues
####### Exact Out-of-Core PCA (BinCOO-Sparse, Command line) #######
Parsed args:
  input  =>  "/tmp/jl_16xbx0/Data.bincoo.zst"
  outdir  =>  "/tmp/jl_nBbSIq"
  pseudocount  =>  1.0f0
  mode  =>  "sparse_bincoo"
  dim  =>  "3"
  chunksize  =>  "51"
  scale  =>  "raw"
# 1. Column-wise Mean
# 2. Out-of-Core Covariance Matrix Calculation

Progress:  2    Time: 0:00:01
Progress:  6    Time: 0:00:01
# 3. PC Score (Z = XV) is being calculated.
# 4. Out-of-Core PC Score Calculation

Progress:  2    Time: 0:00:00
Progress:  6    Time: 0:00:00
# 5. Delayed Centering Correction
# 6. Normalize W and Calculate Eigenvalues
Inner product (Dense): 0.9827157843484113
Inner product (Sparse MM): 0.9999999810299558
Inner product (Sparse BinCOO): 0.9999999810299558
All tests completed.
     Testing OnlinePCA tests passed 

Testing completed after 2309.7s

PkgEval succeeded after 2653.95s