Package evaluation of Stheno on Julia 1.13.0-DEV.717 (51214a7524*) started at 2025-06-08T17:20:18.825 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 6.07s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.1 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.25.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 3.79s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 49.04s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_g5jJ1o/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.32 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_g5jJ1o/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.1 [a9b6321e] Atomix v1.1.1 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.4 [d360d2e6] ChainRulesCore v1.25.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.5.8 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.2 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.14 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.34 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.3.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.36+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 1954.8 ms ✓ StructArrays → StructArraysStaticArraysExt 9195.4 ms ✓ ForwardDiff 3264.1 ms ✓ KernelAbstractions → SparseArraysExt 2777.7 ms ✓ KernelAbstractions → LinearAlgebraExt 2985.9 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 4302.0 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 16234.1 ms ✓ GPUArrays 65475.0 ms ✓ Zygote 8 dependencies successfully precompiled in 107 seconds. 96 already precompiled. Precompiling packages... 10311.5 ms ✓ Zygote → ZygoteDistancesExt 1 dependency successfully precompiled in 11 seconds. 108 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#278` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 19m29.9s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1189s / 98.3% 29.6GiB / 99.3% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 753s 64.4% 753s 20.6GiB 70.1% 20.6GiB addition 1 427s 36.5% 427s 11.9GiB 40.4% 11.9GiB Standardised Tests (correlated sum) 1 242s 20.7% 242s 6.46GiB 22.0% 6.46GiB adj_ad 9 33.3s 2.8% 3.70s 1.03GiB 3.5% 118MiB adj_fd 9 9.06s 0.8% 1.01s 329MiB 1.1% 36.5MiB Standardised Tests (independent sum) 1 139s 11.9% 139s 5.10GiB 17.3% 5.10GiB adj_ad 9 27.2s 2.3% 3.02s 1.25GiB 4.3% 142MiB adj_fd 9 10.9s 0.9% 1.21s 314MiB 1.0% 34.9MiB Correlated GPs 1 43.3s 3.7% 43.3s 294MiB 1.0% 294MiB Consistency Tests 1 18.0s 1.5% 18.0s 129MiB 0.4% 129MiB Verify mean / kernel numerically 1 3.00s 0.3% 3.00s 43.1MiB 0.1% 43.1MiB Consistency Tests 1 1.79s 0.2% 1.79s 14.7MiB 0.0% 14.7MiB product 1 155s 13.3% 155s 4.03GiB 13.7% 4.03GiB multiply by function 1 89.7s 7.7% 89.7s 2.15GiB 7.3% 2.15GiB Diff Tests 1 51.1s 4.4% 51.1s 1.61GiB 5.5% 1.61GiB adj_ad 9 20.1s 1.7% 2.23s 883MiB 2.9% 98.1MiB adj_fd 9 5.98s 0.5% 665ms 115MiB 0.4% 12.8MiB Consistency Tests 1 6.25s 0.5% 6.25s 110MiB 0.4% 110MiB multiply by constant 1 65.5s 5.6% 65.5s 1.88GiB 6.4% 1.88GiB Diff Tests 1 49.5s 4.2% 49.5s 1.82GiB 6.2% 1.82GiB adj_ad 9 16.1s 1.4% 1.79s 805MiB 2.7% 89.5MiB adj_fd 9 11.0s 0.9% 1.22s 307MiB 1.0% 34.1MiB Consistency Tests 1 4.04s 0.3% 4.04s 20.3MiB 0.1% 20.3MiB GP mul errors 1 11.7ms 0.0% 11.7ms 40.1KiB 0.0% 40.1KiB compose 1 80.3s 6.9% 80.3s 2.38GiB 8.1% 2.38GiB general 1 47.9s 4.1% 47.9s 1.52GiB 5.2% 1.52GiB Diff Tests 1 43.0s 3.7% 43.0s 1.47GiB 5.0% 1.47GiB adj_ad 9 14.0s 1.2% 1.55s 712MiB 2.4% 79.1MiB adj_fd 9 5.26s 0.5% 585ms 113MiB 0.4% 12.6MiB Consistency Tests 1 3.67s 0.3% 3.67s 39.7MiB 0.1% 39.7MiB Stretch 1 26.3s 2.3% 26.3s 775MiB 2.6% 775MiB scalar stretch 1 25.6s 2.2% 25.6s 762MiB 2.5% 762MiB scalar input 1 24.8s 2.1% 24.8s 758MiB 2.5% 758MiB adj_fd 9 8.58s 0.7% 953ms 295MiB 1.0% 32.8MiB adj_ad 9 3.67s 0.3% 408ms 141MiB 0.5% 15.7MiB vector input 1 803ms 0.1% 803ms 3.37MiB 0.0% 3.37MiB Vector stretch 1 631ms 0.1% 631ms 9.93MiB 0.0% 9.93MiB Matrix stretch 1 131ms 0.0% 131ms 3.07MiB 0.0% 3.07MiB Shift 1 3.11s 0.3% 3.11s 41.5MiB 0.1% 41.5MiB Shift{Vector{Float64}} 1 1.72s 0.1% 1.72s 15.0MiB 0.0% 15.0MiB Shift{Float64} 1 1.39s 0.1% 1.39s 26.5MiB 0.1% 26.5MiB Select 1 1.68s 0.1% 1.68s 33.7MiB 0.1% 33.7MiB evaluation 1 829ms 0.1% 829ms 21.7MiB 0.1% 21.7MiB idx isa Vector 1 501ms 0.0% 501ms 7.93MiB 0.0% 7.93MiB idx isa Integer 1 351ms 0.0% 351ms 4.07MiB 0.0% 4.07MiB Periodic 1 1.20s 0.1% 1.20s 34.5MiB 0.1% 34.5MiB cross 1 29.4s 2.5% 29.4s 1.40GiB 4.8% 1.40GiB block arrays 1 16.5s 1.4% 16.5s 796MiB 2.6% 796MiB Stheno._collect ∘ _mortar 1 13.8s 1.2% 13.8s 684MiB 2.3% 684MiB BlockMatrix 1 7.32s 0.6% 7.32s 380MiB 1.3% 380MiB adj_fd 1 980ms 0.1% 980ms 112MiB 0.4% 112MiB adj_ad 1 59.6ms 0.0% 59.6ms 2.40MiB 0.0% 2.40MiB BlockVector 1 6.52s 0.6% 6.52s 304MiB 1.0% 304MiB adj_fd 1 756ms 0.1% 756ms 13.2MiB 0.0% 13.2MiB adj_ad 1 219ms 0.0% 219ms 15.8MiB 0.1% 15.8MiB fdm stuff 1 2.69s 0.2% 2.69s 112MiB 0.4% 112MiB Correctness tests 1 7.18s 0.6% 7.18s 398MiB 1.3% 398MiB Standardised Tests 1 5.70s 0.5% 5.70s 242MiB 0.8% 242MiB gp 1 195s 16.7% 195s 4.50GiB 15.3% 4.50GiB sparse gp 1 20.7s 1.8% 20.7s 381MiB 1.3% 381MiB SparseFiniteGP inference 1 15.5s 1.3% 15.5s 267MiB 0.9% 267MiB SparseFiniteGP methods 1 4.78s 0.4% 4.78s 109MiB 0.4% 109MiB SparseFiniteGP Constructors 1 384ms 0.0% 384ms 4.11MiB 0.0% 4.11MiB adj_ad 2 19.7s 1.7% 9.85s 843MiB 2.8% 421MiB gp 1 15.9s 1.4% 15.9s 265MiB 0.9% 265MiB GP 1 15.6s 1.3% 15.6s 262MiB 0.9% 262MiB independent GPs 1 313ms 0.0% 313ms 2.71MiB 0.0% 2.71MiB wrapped AbstractGP 1 12.5ms 0.0% 12.5ms 289KiB 0.0% 289KiB adj_fd 2 2.52s 0.2% 1.26s 43.3MiB 0.1% 21.7MiB derived_gp 1 165μs 0.0% 165μs 1.59KiB 0.0% 1.59KiB gaussian_process_probabilistic_programme 1 142s 12.1% 142s 2.32GiB 7.9% 2.32GiB Zygote 1 25.9s 2.2% 25.9s 0.98GiB 3.3% 0.98GiB nested gppp 1 16.1s 1.4% 16.1s 93.4MiB 0.3% 93.4MiB External Consistency 1 13.7s 1.2% 13.7s 100MiB 0.3% 100MiB split 1 645ms 0.1% 645ms 12.1MiB 0.0% 12.1MiB gppp macro 1 53.6ms 0.0% 53.6ms 575KiB 0.0% 575KiB doctests 1 71.8s 6.1% 71.8s 1.73GiB 5.9% 1.73GiB BlockData 1 7.05s 0.6% 7.05s 266MiB 0.9% 266MiB vcat(::GPPPInput...) 1 2.22s 0.2% 2.22s 102MiB 0.3% 102MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1325.56s PkgEval succeeded after 1400.05s