Package evaluation of ReactionMechanismSimulator on Julia 1.13.0-DEV.717 (51214a7524*) started at 2025-06-09T08:42:54.841 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 6.17s ################################################################################ # Installation # Installing ReactionMechanismSimulator... Resolving package versions... Installed Glob ───────────────────────────── v1.3.1 Installed DefineSingletons ───────────────── v0.1.2 Installed VertexSafeGraphs ───────────────── v0.2.0 Installed MosaicViews ────────────────────── v0.3.4 Installed Formatting ─────────────────────── v0.4.3 Installed InlineStrings ──────────────────── v1.4.3 Installed Calculus ───────────────────────── v0.5.2 Installed MKL_jll ────────────────────────── v2025.0.1+1 Installed Libtiff_jll ────────────────────── v4.7.1+0 Installed ImageMagick ────────────────────── v1.2.1 Installed AbstractAlgebra ────────────────── v0.27.10 Installed ImageIO ────────────────────────── v0.4.1 Installed GPUCompiler ────────────────────── v0.25.0 Installed Optim ──────────────────────────── v1.11.0 Installed SIMDTypes ──────────────────────── v0.1.0 Installed OrderedCollections ─────────────── v1.8.1 Installed Functors ───────────────────────── v0.4.12 Installed PreallocationTools ─────────────── v0.4.24 Installed ChainRules ─────────────────────── v1.72.4 Installed CpuId ──────────────────────────── v0.3.1 Installed Sundials ───────────────────────── v4.20.1 Installed UnsafePointers ─────────────────── v1.0.0 Installed FileIO ─────────────────────────── v1.17.0 Installed ArgCheck ───────────────────────── v2.5.0 Installed CustomUnitRanges ───────────────── v1.0.2 Installed SentinelArrays ─────────────────── v1.4.8 Installed EnzymeCore ─────────────────────── v0.6.6 Installed InitialValues ──────────────────── v0.3.1 Installed CondaPkg ───────────────────────── v0.2.29 Installed LsqFit ─────────────────────────── v0.12.1 Installed Distances ──────────────────────── v0.10.12 Installed StaticArrayInterface ───────────── v1.8.0 Installed NaNMath ────────────────────────── v1.1.3 Installed Pidfile ────────────────────────── v1.3.0 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed TreeViews ──────────────────────── v0.3.0 Installed Graphics ───────────────────────── v1.1.3 Installed FastBroadcast ──────────────────── v0.2.8 Installed PackageExtensionCompat ─────────── v1.0.2 Installed DiffEqCallbacks ────────────────── v2.35.0 Installed QuadGK ─────────────────────────── v2.10.1 Installed StructIO ───────────────────────── v0.3.1 Installed SymbolicUtils ──────────────────── v0.19.11 Installed LinearSolve ────────────────────── v2.14.1 Installed JuliaFormatter ─────────────────── v1.0.62 Installed Groebner ───────────────────────── v0.2.11 Installed WoodburyMatrices ───────────────── v0.5.6 Installed EnumX ──────────────────────────── v1.0.5 Installed Tables ─────────────────────────── v1.12.1 Installed NLSolversBase ──────────────────── v7.8.3 Installed InverseFunctions ───────────────── v0.1.17 Installed Reexport ───────────────────────── v1.2.2 Installed OptimBase ──────────────────────── v2.0.2 Installed Missings ───────────────────────── v1.2.0 Installed LERC_jll ───────────────────────── v4.0.1+0 Installed Static ─────────────────────────── v0.8.10 Installed DiffEqBase ─────────────────────── v6.130.0 Installed Preferences ────────────────────── v1.4.3 Installed NonlinearSolve ─────────────────── v1.10.1 Installed JumpProcesses ──────────────────── v9.10.1 Installed TableTraits ────────────────────── v1.0.1 Installed MappedArrays ───────────────────── v0.4.2 Installed LaTeXStrings ───────────────────── v1.4.0 Installed Crayons ────────────────────────── v4.1.1 Installed KLU ────────────────────────────── v0.4.1 Installed SortingAlgorithms ──────────────── v1.2.1 Installed RecursiveArrayTools ────────────── v2.38.10 Installed RangeArrays ────────────────────── v0.3.2 Installed UnPack ─────────────────────────── v1.0.2 Installed Inflate ────────────────────────── v0.1.5 Installed MacroTools ─────────────────────── v0.5.16 Installed DataStructures ─────────────────── v0.18.22 Installed GenericSchur ───────────────────── v0.5.5 Installed ADTypes ────────────────────────── v0.1.6 Installed Quaternions ────────────────────── v0.7.6 Installed DiffResults ────────────────────── v1.1.0 Installed LevyArea ───────────────────────── v1.0.0 Installed ManualMemory ───────────────────── v0.1.8 Installed AbstractTrees ──────────────────── v0.4.5 Installed FillArrays ─────────────────────── v1.13.0 Installed Tricks ─────────────────────────── v0.1.10 Installed RecursiveFactorization ─────────── v0.2.23 Installed VectorizationBase ──────────────── v0.21.71 Installed oneTBB_jll ─────────────────────── v2022.0.0+0 Installed TriangularSolve ────────────────── v0.2.1 Installed ArnoldiMethod ──────────────────── v0.4.0 Installed StatsBase ──────────────────────── v0.33.21 Installed CodecZlib ──────────────────────── v0.7.8 Installed ExprTools ──────────────────────── v0.1.10 Installed ArrayInterface ─────────────────── v7.7.1 Installed TermInterface ──────────────────── v0.2.3 Installed EllipsisNotation ───────────────── v1.8.0 Installed HostCPUFeatures ────────────────── v0.1.17 Installed DataValueInterfaces ────────────── v1.0.0 Installed IntelOpenMP_jll ────────────────── v2025.0.4+0 Installed micromamba_jll ─────────────────── v1.5.8+0 Installed RandomNumbers ──────────────────── v1.6.0 Installed Zygote ─────────────────────────── v0.6.77 Installed LayoutPointers ─────────────────── v0.1.17 Installed CommonSubexpressions ───────────── v0.3.1 Installed RealDot ────────────────────────── v0.1.0 Installed ConcreteStructs ────────────────── v0.2.3 Installed SparseDiffTools ────────────────── v2.4.1 Installed Optimisers ─────────────────────── v0.4.0 Installed ObjectFile ─────────────────────── v0.4.4 Installed GPUArraysCore ──────────────────── v0.1.5 Installed TruncatedStacktraces ───────────── v1.4.0 Installed libpng_jll ─────────────────────── v1.6.48+0 Installed IntegerMathUtils ───────────────── v0.1.2 Installed CEnum ──────────────────────────── v0.4.2 Installed SimpleTraits ───────────────────── v0.9.4 Installed IrrationalConstants ────────────── v0.1.1 Installed ThreadsX ───────────────────────── v0.1.12 Installed ColorVectorSpace ───────────────── v0.8.7 Installed ImageMetadata ──────────────────── v0.9.5 Installed UnsafeAtomicsLLVM ──────────────── v0.1.5 Installed SplittablesBase ────────────────── v0.1.15 Installed Transducers ────────────────────── v0.4.84 Installed Referenceables ─────────────────── v0.1.3 Installed QuartzImageIO ──────────────────── v0.7.3 Installed ImageShow ──────────────────────── v0.3.1 Installed Setfield ───────────────────────── v1.1.2 Installed Scratch ────────────────────────── v1.2.1 Installed ImageTransformations ───────────── v0.8.13 Installed Interpolations ─────────────────── v0.13.6 Installed Baselet ────────────────────────── v0.1.1 Installed CompositeTypes ─────────────────── v0.1.4 Installed PooledArrays ───────────────────── v1.4.3 Installed ImageMorphology ────────────────── v0.2.11 Installed ArrayInterfaceCore ─────────────── v0.1.29 Installed ImageMagick_jll ────────────────── v6.9.13025+0 Installed pixi_jll ───────────────────────── v0.41.3+0 Installed WorkerUtilities ────────────────── v1.6.1 Installed PDMats ─────────────────────────── v0.11.35 Installed AxisArrays ─────────────────────── v0.4.7 Installed OrdinaryDiffEq ─────────────────── v6.58.2 Installed FFTViews ───────────────────────── v0.3.2 Installed ResettableStacks ───────────────── v1.1.1 Installed DocStringExtensions ────────────── v0.9.5 Installed CompositionsBase ───────────────── v0.1.2 Installed CommonSolve ────────────────────── v0.2.4 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed ForwardDiff ────────────────────── v0.10.38 Installed VersionParsing ─────────────────── v1.3.0 Installed PythonPlot ─────────────────────── v1.0.6 Installed OpenJpeg_jll ───────────────────── v2.5.4+0 Installed SimpleUnPack ───────────────────── v1.1.0 Installed Sundials_jll ───────────────────── v5.2.3+0 Installed StackViews ─────────────────────── v0.1.2 Installed PythonCall ─────────────────────── v0.9.25 Installed Ghostscript_jll ────────────────── v9.55.0+4 Installed SLEEFPirates ───────────────────── v0.6.43 Installed SciMLSensitivity ───────────────── v7.38.0 Installed Bijections ─────────────────────── v0.1.10 Installed PNGFiles ───────────────────────── v0.3.17 Installed LabelledArrays ─────────────────── v1.15.1 Installed ImageCore ──────────────────────── v0.8.22 Installed TiledIteration ─────────────────── v0.3.1 Installed AliasTables ────────────────────── v1.1.3 Installed GroupsCore ─────────────────────── v0.4.2 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed Krylov ─────────────────────────── v0.9.10 Installed DynamicPolynomials ─────────────── v0.4.6 Installed SparseInverseSubset ────────────── v0.1.2 Installed Combinatorics ──────────────────── v1.0.3 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed DomainSets ─────────────────────── v0.5.14 Installed Sparspak ───────────────────────── v0.3.11 Installed FunctionWrappersWrappers ───────── v0.1.3 Installed RecipesBase ────────────────────── v1.3.4 Installed DataAPI ────────────────────────── v1.16.0 Installed SciMLOperators ─────────────────── v0.3.13 Installed InvertedIndices ────────────────── v1.3.1 Installed Colors ─────────────────────────── v0.12.11 Installed Netpbm ─────────────────────────── v1.0.1 Installed StaticArrays ───────────────────── v1.9.13 Installed ImageDistances ─────────────────── v0.2.13 Installed ImageQualityIndexes ────────────── v0.2.2 Installed CSV ────────────────────────────── v0.10.15 Installed NNlib ──────────────────────────── v0.9.28 Installed GPUArrays ──────────────────────── v9.1.0 Installed ImageAxes ──────────────────────── v0.6.9 Installed IncompleteLU ───────────────────── v0.2.1 Installed StaticArraysCore ───────────────── v1.4.3 Installed ReverseDiff ────────────────────── v1.16.1 Installed MultivariatePolynomials ────────── v0.4.7 Installed BangBang ───────────────────────── v0.4.4 Installed Tokenize ───────────────────────── v0.5.29 Installed FastGaussQuadrature ────────────── v0.5.1 Installed Latexify ───────────────────────── v0.15.21 Installed AbstractFFTs ───────────────────── v1.5.0 Installed AxisAlgorithms ─────────────────── v1.0.1 Installed StringManipulation ─────────────── v0.4.1 Installed FunctionWrappers ───────────────── v1.1.3 Installed Requires ───────────────────────── v1.3.1 Installed LogExpFunctions ────────────────── v0.3.29 Installed Symbolics ──────────────────────── v4.14.0 Installed Enzyme_jll ─────────────────────── v0.0.102+0 Installed PrettyTables ───────────────────── v2.4.0 Installed ColorTypes ─────────────────────── v0.10.12 Installed DiffRules ──────────────────────── v1.15.1 Installed Distributions ──────────────────── v0.25.120 Installed LLVM ───────────────────────────── v6.6.3 Installed Parsers ────────────────────────── v2.8.3 Installed AutoHashEquals ─────────────────── v0.2.0 Installed FastClosures ───────────────────── v0.3.2 Installed Rmath ──────────────────────────── v0.8.0 Installed FiniteDiff ─────────────────────── v2.27.0 Installed UnsafeAtomics ──────────────────── v0.2.1 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed Polyester ──────────────────────── v0.7.18 Installed StatsFuns ──────────────────────── v1.5.0 Installed Unitful ────────────────────────── v1.22.1 Installed SciMLBase ──────────────────────── v1.98.1 Installed ImageContrastAdjustment ────────── v0.3.7 Installed WeakRefStrings ─────────────────── v1.4.2 Installed JLLWrappers ────────────────────── v1.7.0 Installed IRTools ────────────────────────── v0.4.14 Installed MutableArithmetics ─────────────── v1.6.4 Installed ZygoteRules ────────────────────── v0.2.7 Installed DataFrames ─────────────────────── v1.7.0 Installed XZ_jll ─────────────────────────── v5.8.1+0 Installed StructTypes ────────────────────── v1.11.0 Installed Primes ─────────────────────────── v0.5.7 Installed ThreadingUtilities ─────────────── v0.5.4 Installed RandomExtensions ───────────────── v0.4.4 Installed IterTools ──────────────────────── v1.10.0 Installed Graphs ─────────────────────────── v1.13.0 Installed MicroCollections ───────────────── v0.2.0 Installed Accessors ──────────────────────── v0.1.42 Installed FilePathsBase ──────────────────── v0.9.24 Installed JpegTurbo_jll ──────────────────── v3.1.1+0 Installed ExponentialUtilities ───────────── v1.27.0 Installed PaddedViews ────────────────────── v0.5.12 Installed StochasticDiffEq ───────────────── v6.62.0 Installed SmoothingSplines ───────────────── v0.3.1 Installed SnoopPrecompile ────────────────── v1.0.3 Installed LLVMExtra_jll ──────────────────── v0.0.29+0 Installed Adapt ──────────────────────────── v3.7.2 Installed RuntimeGeneratedFunctions ──────── v0.5.15 Installed HypergeometricFunctions ────────── v0.3.28 Installed PoissonRandom ──────────────────── v0.4.4 Installed SciMLNLSolve ───────────────────── v0.1.9 Installed SymbolicIndexingInterface ──────── v0.2.2 Installed Random123 ──────────────────────── v1.7.1 Installed TranscodingStreams ─────────────── v0.11.3 Installed ConstructionBase ───────────────── v1.5.6 Installed LoopVectorization ──────────────── v0.12.172 Installed CSTParser ──────────────────────── v3.4.3 Installed Compat ─────────────────────────── v4.16.0 Installed StrideArraysCore ───────────────── v0.5.7 Installed ImageFiltering ─────────────────── v0.6.21 Installed IdentityRanges ─────────────────── v0.3.1 Installed ModelingToolkit ────────────────── v8.46.1 Installed LambertW ───────────────────────── v0.4.6 Installed FastLapackInterface ────────────── v2.0.4 Installed PositiveFactorizations ─────────── v0.2.4 Installed Statistics ─────────────────────── v1.11.1 Installed Atomix ─────────────────────────── v0.1.0 Installed StatsAPI ───────────────────────── v1.7.1 Installed PrecompileTools ────────────────── v1.3.2 Installed StructArrays ───────────────────── v0.6.18 Installed StringEncodings ────────────────── v0.3.7 Installed TimerOutputs ───────────────────── v0.5.29 Installed OffsetArrays ───────────────────── v1.17.0 Installed CoordinateTransformations ──────── v0.6.4 Installed Cassette ───────────────────────── v0.3.14 Installed ChainRulesCore ─────────────────── v1.25.1 Installed Metatheory ─────────────────────── v1.3.5 Installed Tracker ────────────────────────── v0.2.38 Installed CPUSummary ─────────────────────── v0.2.6 Installed Ratios ─────────────────────────── v0.4.5 Installed YAML ───────────────────────────── v0.4.14 Installed JSON3 ──────────────────────────── v1.14.3 Installed ReactionMechanismSimulator ─────── v1.0.1 Installed MicroMamba ─────────────────────── v0.1.14 Installed NLsolve ────────────────────────── v4.5.1 Installed ComputationalResources ─────────── v0.3.2 Installed Enzyme ─────────────────────────── v0.11.20 Installed Parameters ─────────────────────── v0.12.3 Installed IfElse ─────────────────────────── v0.1.1 Installed PtrArrays ──────────────────────── v1.3.0 Installed MuladdMacro ────────────────────── v0.2.4 Installed IntervalSets ───────────────────── v0.7.11 Installed LittleCMS_jll ──────────────────── v2.16.0+0 Installed DiffEqNoiseProcess ─────────────── v5.24.1 Installed FixedPointNumbers ──────────────── v0.8.5 Installed FFTW_jll ───────────────────────── v3.3.11+0 Installed FFTW ───────────────────────────── v1.9.0 Installed CatIndices ─────────────────────── v0.2.2 Installed Rotations ──────────────────────── v1.7.1 Installed CommonMark ─────────────────────── v0.8.16 Installed SpecialFunctions ───────────────── v1.8.8 Installed Libiconv_jll ───────────────────── v1.18.0+0 Installed PolyesterWeave ─────────────────── v0.2.2 Installed KernelAbstractions ─────────────── v0.9.18 Installed LineSearches ───────────────────── v7.3.0 Installed SimpleNonlinearSolve ───────────── v0.1.23 Installed IndirectArrays ─────────────────── v0.5.1 Installed Images ─────────────────────────── v0.24.1 Installing 15 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact OpenJpeg 421.4 KiB Installed artifact libpng 328.3 KiB Installed artifact LittleCMS 747.7 KiB Installed artifact Sundials 2.1 MiB Installed artifact oneTBB 435.6 KiB Installed artifact Libiconv 1.9 MiB Installed artifact Rmath 121.9 KiB Installed artifact XZ 1.5 MiB Installed artifact FFTW 2.2 MiB Installed artifact LERC 272.9 KiB Installed artifact JpegTurbo 1.6 MiB Installed artifact ImageMagick 6.2 MiB Installed artifact Libtiff 3.2 MiB Installed artifact Ghostscript 31.4 MiB Updating `~/.julia/environments/v1.13/Project.toml` [c2d78dd2] + ReactionMechanismSimulator v1.0.1 Updating `~/.julia/environments/v1.13/Manifest.toml` ⌅ [47edcb42] + ADTypes v0.1.6 ⌅ [c3fe647b] + AbstractAlgebra v0.27.10 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 ⌅ [79e6a3ab] + Adapt v3.7.2 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 ⌃ [4fba245c] + ArrayInterface v7.7.1 [30b0a656] + ArrayInterfaceCore v0.1.29 ⌅ [a9b6321e] + Atomix v0.1.0 ⌅ [15f4f7f2] + AutoHashEquals v0.2.0 ⌃ [13072b0f] + AxisAlgorithms v1.0.1 [39de3d68] + AxisArrays v0.4.7 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 ⌅ [e2ed5e7c] + Bijections v0.1.10 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 ⌅ [fa961155] + CEnum v0.4.2 [2a0fbf3d] + CPUSummary v0.2.6 [00ebfdb7] + CSTParser v3.4.3 [336ed68f] + CSV v0.10.15 [49dc2e85] + Calculus v0.5.2 [7057c7e9] + Cassette v0.3.14 [aafaddc9] + CatIndices v0.2.2 [082447d4] + ChainRules v1.72.4 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 ⌅ [3da002f7] + ColorTypes v0.10.12 ⌅ [c3611d14] + ColorVectorSpace v0.8.7 ⌅ [5ae59095] + Colors v0.12.11 [861a8166] + Combinatorics v1.0.3 ⌅ [a80b9123] + CommonMark v0.8.16 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [ed09eef8] + ComputationalResources v0.3.2 [2569d6c7] + ConcreteStructs v0.2.3 [992eb4ea] + CondaPkg v0.2.29 ⌅ [187b0558] + ConstructionBase v1.5.6 [150eb455] + CoordinateTransformations v0.6.4 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [dc8bdbbb] + CustomUnitRanges v1.0.2 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 ⌃ [2b5f629d] + DiffEqBase v6.130.0 ⌅ [459566f4] + DiffEqCallbacks v2.35.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 ⌅ [5b8099bc] + DomainSets v0.5.14 ⌅ [7c1d4256] + DynamicPolynomials v0.4.6 [da5c29d0] + EllipsisNotation v1.8.0 [4e289a0a] + EnumX v1.0.5 ⌅ [7da242da] + Enzyme v0.11.20 ⌅ [f151be2c] + EnzymeCore v0.6.6 [d4d017d3] + ExponentialUtilities v1.27.0 [e2ba6199] + ExprTools v0.1.10 [4f61f5a4] + FFTViews 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CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 17.88s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 3199.4 ms ✓ TestEnv 1 dependency successfully precompiled in 3 seconds. 25 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: ReactionMechanismSimulator Failed to precompile ReactionMechanismSimulator [c2d78dd2-25c4-5b79-bebc-be6c69dd440f] to "/home/pkgeval/.julia/compiled/v1.13/ReactionMechanismSimulator/jl_JxflMV" (ProcessExited(1)). CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/L4cjh/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonPlot/oS8x4/CondaPkg.toml CondaPkg Creating environment │ /home/pkgeval/.julia/artifacts/7973f2c7725e2d0eef7a95159454c4145f0945a2/bin/micromamba │ -r /home/pkgeval/.julia/scratchspaces/0b3b1443-0f03-428d-bdfb-f27f9c1191ea/root │ create │ -y │ -p /tmp/jl_5KUyw4/.CondaPkg/env │ --override-channels │ matplotlib[version='>=1'] │ openssl[version='>=3, <3.6'] │ python[version='>=3.8,<4',channel='conda-forge',build='*cpython*'] └ -c conda-forge Transaction Prefix: /tmp/jl_5KUyw4/.CondaPkg/env Updating specs: - matplotlib[version='>=1'] - openssl[version='>=3, <3.6'] - conda-forge::python[version='>=3.8,<4',build=*cpython*] Package Version Build Channel Size ────────────────────────────────────────────────────────────────────────────────────────── Install: 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font-ttf-ubuntu 0.83 h77eed37_3 conda-forge 2MB + fonts-conda-forge 1 0 conda-forge 4kB + fonts-conda-ecosystem 1 0 conda-forge 4kB + openssl 3.5.0 h7b32b05_1 conda-forge 3MB + cairo 1.18.4 h3394656_0 conda-forge 978kB + krb5 1.21.3 h659f571_0 conda-forge 1MB + python 3.12.11 h9e4cc4f_0_cpython conda-forge 31MB + harfbuzz 11.2.1 h3beb420_0 conda-forge 2MB + cyrus-sasl 2.1.27 h54b06d7_7 conda-forge 220kB + libcups 2.3.3 h4637d8d_4 conda-forge 5MB + openldap 2.6.10 he970967_0 conda-forge 780kB + libpq 17.5 h27ae623_0 conda-forge 3MB + qt6-main 6.9.1 h0384650_0 conda-forge 52MB + wheel 0.45.1 pyhd8ed1ab_1 conda-forge 63kB + setuptools 80.9.0 pyhff2d567_0 conda-forge 749kB + pip 25.1.1 pyh8b19718_0 conda-forge 1MB + six 1.17.0 pyhd8ed1ab_0 conda-forge 16kB + munkres 1.1.4 pyh9f0ad1d_0 conda-forge 12kB + pyparsing 3.2.3 pyhd8ed1ab_1 conda-forge 96kB + packaging 25.0 pyh29332c3_1 conda-forge 62kB + cycler 0.12.1 pyhd8ed1ab_1 conda-forge 13kB + python-dateutil 2.9.0.post0 pyhff2d567_1 conda-forge 223kB + unicodedata2 16.0.0 py312h66e93f0_0 conda-forge 404kB + pyside6 6.9.1 py312hdb827e4_0 conda-forge 10MB + tornado 6.5.1 py312h66e93f0_0 conda-forge 851kB + pillow 11.2.1 py312h80c1187_0 conda-forge 43MB + numpy 2.3.0 py312h6cf2f7f_0 conda-forge 8MB + kiwisolver 1.4.8 py312h84d6215_0 conda-forge 72kB + fonttools 4.58.2 py312h178313f_0 conda-forge 3MB + contourpy 1.3.2 py312h68727a3_0 conda-forge 277kB + matplotlib-base 3.10.3 py312hd3ec401_0 conda-forge 8MB + matplotlib 3.10.3 py312h7900ff3_0 conda-forge 17kB Summary: Install: 133 packages Total download: 304MB ────────────────────────────────────────────────────────────────────────────────────────── Transaction starting Linking ld_impl_linux-64-2.43-h712a8e2_4 Linking _libgcc_mutex-0.1-conda_forge Linking libgomp-15.1.0-h767d61c_2 Linking libglvnd-1.7.0-ha4b6fd6_2 Linking _openmp_mutex-4.5-2_gnu Linking libopengl-1.7.0-ha4b6fd6_2 Linking libegl-1.7.0-ha4b6fd6_2 Linking libgcc-15.1.0-h767d61c_2 Linking libgfortran5-15.1.0-hcea5267_2 Linking libntlm-1.8-hb9d3cd8_0 Linking libbrotlicommon-1.1.0-hb9d3cd8_3 Linking libdeflate-1.24-h86f0d12_0 Linking xorg-libxdmcp-1.1.5-hb9d3cd8_0 Linking pthread-stubs-0.4-hb9d3cd8_1002 Linking libiconv-1.18-h4ce23a2_1 Linking xorg-libxau-1.0.12-hb9d3cd8_0 Linking xorg-libice-1.1.2-hb9d3cd8_0 Linking alsa-lib-1.2.14-hb9d3cd8_0 Linking libwebp-base-1.5.0-h851e524_0 Linking libjpeg-turbo-3.1.0-hb9d3cd8_0 Linking ncurses-6.5-h2d0b736_3 Linking libzlib-1.3.1-hb9d3cd8_2 Linking liblzma-5.8.1-hb9d3cd8_2 Linking libstdcxx-15.1.0-h8f9b012_2 Linking libgcc-ng-15.1.0-h69a702a_2 Linking libffi-3.4.6-h2dba641_1 Linking libexpat-2.7.0-h5888daf_0 Linking libgfortran-15.1.0-h69a702a_2 Linking libbrotlienc-1.1.0-hb9d3cd8_3 Linking libbrotlidec-1.1.0-hb9d3cd8_3 Linking libxcb-1.17.0-h8a09558_0 Linking libedit-3.1.20250104-pl5321h7949ede_0 Linking readline-8.2-h8c095d6_2 Linking tk-8.6.13-noxft_hd72426e_102 Linking libsqlite-3.50.1-hee588c1_0 Linking libpng-1.6.47-h943b412_0 Linking pixman-0.46.0-h29eaf8c_0 Linking lerc-4.0.0-h0aef613_1 Linking libstdcxx-ng-15.1.0-h4852527_2 Linking zstd-1.5.7-hb8e6e7a_2 Linking double-conversion-3.3.1-h5888daf_0 Linking libpciaccess-0.18-hd590300_0 Linking keyutils-1.6.1-h166bdaf_0 Linking libxcrypt-4.4.36-hd590300_1 Linking bzip2-1.0.8-h4bc722e_7 Linking libuuid-2.38.1-h0b41bf4_0 Linking libnsl-2.0.1-hd590300_0 Linking wayland-1.23.1-h3e06ad9_1 Linking libopenblas-0.3.29-pthreads_h94d23a6_0 Linking brotli-bin-1.1.0-hb9d3cd8_3 Linking xorg-libx11-1.8.12-h4f16b4b_0 Linking xcb-util-wm-0.4.2-hb711507_0 Linking xcb-util-renderutil-0.3.10-hb711507_0 Linking xcb-util-keysyms-0.4.1-hb711507_0 Linking xcb-util-0.4.1-hb711507_2 Linking libfreetype6-2.13.3-h48d6fc4_1 Linking graphite2-1.3.13-h59595ed_1003 Linking icu-75.1-he02047a_0 Linking qhull-2020.2-h434a139_5 Linking libtiff-4.7.0-hf01ce69_5 Linking libdrm-2.4.124-hb9d3cd8_0 Linking pcre2-10.45-hc749103_0 Linking xorg-libsm-1.2.6-he73a12e_0 Linking libblas-3.9.0-31_h59b9bed_openblas Linking brotli-1.1.0-hb9d3cd8_3 Linking libglx-1.7.0-ha4b6fd6_2 Linking xorg-libxrender-0.9.12-hb9d3cd8_0 Linking xkeyboard-config-2.45-hb9d3cd8_0 Linking xorg-libxfixes-6.0.1-hb9d3cd8_0 Linking xorg-libxext-1.3.6-hb9d3cd8_0 Linking xcb-util-image-0.4.0-hb711507_2 Linking libfreetype-2.13.3-ha770c72_1 Linking libxml2-2.13.8-h4bc477f_0 Linking openjpeg-2.5.3-h5fbd93e_0 Linking lcms2-2.17-h717163a_0 Linking libglib-2.84.2-h3618099_0 Linking libcblas-3.9.0-31_he106b2a_openblas Linking liblapack-3.9.0-31_h7ac8fdf_openblas Linking libgl-1.7.0-ha4b6fd6_2 Linking xorg-libxcomposite-0.4.6-hb9d3cd8_2 Linking xorg-libxcursor-1.2.3-hb9d3cd8_0 Linking xorg-libxi-1.8.2-hb9d3cd8_0 Linking xorg-libxxf86vm-1.1.6-hb9d3cd8_0 Linking xorg-libxrandr-1.5.4-hb9d3cd8_0 Linking xorg-libxdamage-1.1.6-hb9d3cd8_0 Linking xcb-util-cursor-0.1.5-hb9d3cd8_0 Linking freetype-2.13.3-ha770c72_1 Linking libxkbcommon-1.10.0-h65c71a3_0 Linking libllvm20-20.1.6-he9d0ab4_0 Linking libxslt-1.1.39-h76b75d6_0 Linking dbus-1.16.2-h3c4dab8_0 Linking xorg-libxtst-1.2.5-hb9d3cd8_3 Linking fontconfig-2.15.0-h7e30c49_1 Linking libclang-cpp20.1-20.1.6-default_h1df26ce_0 Linking libclang13-20.1.6-default_he06ed0a_0 Linking tzdata-2025b-h78e105d_0 Linking ca-certificates-2025.4.26-hbd8a1cb_0 Linking python_abi-3.12-7_cp312 Linking font-ttf-dejavu-sans-mono-2.37-hab24e00_0 Linking font-ttf-inconsolata-3.000-h77eed37_0 Linking font-ttf-source-code-pro-2.038-h77eed37_0 Linking font-ttf-ubuntu-0.83-h77eed37_3 Linking fonts-conda-forge-1-0 Linking fonts-conda-ecosystem-1-0 Linking openssl-3.5.0-h7b32b05_1 Linking cairo-1.18.4-h3394656_0 Linking krb5-1.21.3-h659f571_0 Linking python-3.12.11-h9e4cc4f_0_cpython Linking harfbuzz-11.2.1-h3beb420_0 Linking cyrus-sasl-2.1.27-h54b06d7_7 Linking libcups-2.3.3-h4637d8d_4 Linking openldap-2.6.10-he970967_0 Linking libpq-17.5-h27ae623_0 Linking qt6-main-6.9.1-h0384650_0 Linking wheel-0.45.1-pyhd8ed1ab_1 Linking setuptools-80.9.0-pyhff2d567_0 Linking pip-25.1.1-pyh8b19718_0 Linking six-1.17.0-pyhd8ed1ab_0 Linking munkres-1.1.4-pyh9f0ad1d_0 Linking pyparsing-3.2.3-pyhd8ed1ab_1 Linking packaging-25.0-pyh29332c3_1 Linking cycler-0.12.1-pyhd8ed1ab_1 Linking python-dateutil-2.9.0.post0-pyhff2d567_1 Linking unicodedata2-16.0.0-py312h66e93f0_0 Linking pyside6-6.9.1-py312hdb827e4_0 Linking tornado-6.5.1-py312h66e93f0_0 Linking pillow-11.2.1-py312h80c1187_0 Linking numpy-2.3.0-py312h6cf2f7f_0 Linking kiwisolver-1.4.8-py312h84d6215_0 Linking fonttools-4.58.2-py312h178313f_0 Linking contourpy-1.3.2-py312h68727a3_0 Linking matplotlib-base-3.10.3-py312hd3ec401_0 Linking matplotlib-3.10.3-py312h7900ff3_0 Transaction finished To activate this environment, use: micromamba activate /tmp/jl_5KUyw4/.CondaPkg/env Or to execute a single command in this environment, use: micromamba run -p /tmp/jl_5KUyw4/.CondaPkg/env mycommand [ Info: missing rmg and rmgmolecule installing rmgmolecule... [ Info: python version was not in 3.7-3.9 changing python version CondaPkg Found dependencies: /tmp/jl_5KUyw4/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/L4cjh/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonPlot/oS8x4/CondaPkg.toml CondaPkg Resolving changes ~ matplotlib + pydot ~ python + rdkit + rmgmolecule CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/7973f2c7725e2d0eef7a95159454c4145f0945a2/bin/micromamba │ -r /home/pkgeval/.julia/scratchspaces/0b3b1443-0f03-428d-bdfb-f27f9c1191ea/root │ install │ -y │ -p /tmp/jl_5KUyw4/.CondaPkg/env │ --override-channels │ matplotlib[version='>=1',channel='conda-forge'] │ openssl[version='>=3, <3.6'] │ pydot[version='>=2.0',channel='conda-forge'] │ python[version='3.9, >=3.8,<4',channel='conda-forge',build='*cpython*'] │ rdkit[version='*',channel='conda-forge'] │ rmgmolecule[version='>=0.3.0',channel='mjohnson541'] └ -c conda-forge conda-forge/linux-64 Using cache conda-forge/noarch Using cache error libmamba Could not solve for environment specs The following packages are incompatible ├─ openssl >=3,<3.6 is requested and can be installed; └─ python 3.9,>=3.8,<4 *cpython* is not installable because it requires └─ openssl >=1.1.1h,<1.1.2a , which conflicts with any installable versions previously reported. critical libmamba Could not solve for environment specs ERROR: LoadError: failed process: Process(`/home/pkgeval/.julia/artifacts/7973f2c7725e2d0eef7a95159454c4145f0945a2/bin/micromamba -r /home/pkgeval/.julia/scratchspaces/0b3b1443-0f03-428d-bdfb-f27f9c1191ea/root install -y -p /tmp/jl_5KUyw4/.CondaPkg/env --override-channels "matplotlib[version='>=1',channel='conda-forge']" "openssl[version='>=3, <3.6']" "pydot[version='>=2.0',channel='conda-forge']" "python[version='3.9, >=3.8,<4',channel='conda-forge',build='*cpython*']" "rdkit[version='*',channel='conda-forge']" "rmgmolecule[version='>=0.3.0',channel='mjohnson541']" -c conda-forge`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run(::Cmd) @ Base ./process.jl:514 [4] _run(io::IO, cmd::Cmd, args::Any; flags::Any) @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:715 [5] _resolve_conda_install(io::Any, conda_env::Any, specs::Any, channels::Any; create::Any) @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:594 [6] _resolve_conda_install(io::Any, conda_env::Any, specs::Any, channels::Any) @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:564 [7] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool) @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:910 [8] resolve() @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:718 [9] top-level scope @ ~/.julia/packages/ReactionMechanismSimulator/EureN/src/ReactionMechanismSimulator.jl:21 [10] include(mod::Module, _path::String) @ Base ./Base.jl:309 [11] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [12] top-level scope @ stdin:5 [13] eval(m::Module, e::Any) @ Core ./boot.jl:489 [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [15] include_string @ ./loading.jl:2856 [inlined] [16] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [17] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/ReactionMechanismSimulator/EureN/src/ReactionMechanismSimulator.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 1383.57s ################################################################################ # Testing # Testing ReactionMechanismSimulator Status `/tmp/jl_gV5rEL/Project.toml` [336ed68f] CSV v0.10.15 [49dc2e85] Calculus v0.5.2 ⌅ [5ae59095] Colors v0.12.11 [992eb4ea] CondaPkg v0.2.29 [a93c6f00] DataFrames v1.7.0 ⌅ [442a2c76] FastGaussQuadrature v0.5.1 ⌅ [f6369f11] ForwardDiff v0.10.38 ⌅ [916415d5] Images v0.24.1 [40713840] IncompleteLU v0.2.1 [c8e1da08] IterTools v1.10.0 ⌅ [2fda8390] LsqFit v0.12.1 [0b3b1443] MicroMamba v0.1.14 ⌅ [961ee093] ModelingToolkit v8.46.1 ⌃ [1dea7af3] OrdinaryDiffEq v6.58.2 [d96e819e] Parameters v0.12.3 ⌃ [d236fae5] PreallocationTools v0.4.24 [6099a3de] PythonCall v0.9.25 [274fc56d] PythonPlot v1.0.6 ⌃ [dca85d43] QuartzImageIO v0.7.3 [c2d78dd2] ReactionMechanismSimulator v1.0.1 ⌅ [731186ca] RecursiveArrayTools v2.38.10 [37e2e3b7] ReverseDiff v1.16.1 ⌅ [0bca4576] SciMLBase v1.98.1 ⌃ [1ed8b502] SciMLSensitivity v7.38.0 ⌃ [102930c3] SmoothingSplines v0.3.1 ⌅ [276daf66] SpecialFunctions v1.8.8 [90137ffa] StaticArrays v1.9.13 [10745b16] Statistics v1.11.1 ⌃ [c3572dad] Sundials v4.20.1 ⌅ [0c5d862f] Symbolics v4.14.0 [9f7883ad] Tracker v0.2.38 [1986cc42] Unitful v1.22.1 [ddb6d928] YAML v0.4.14 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_gV5rEL/Manifest.toml` ⌅ [47edcb42] ADTypes v0.1.6 ⌅ [c3fe647b] AbstractAlgebra v0.27.10 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 ⌅ [79e6a3ab] Adapt v3.7.2 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 ⌃ [4fba245c] ArrayInterface v7.7.1 [30b0a656] ArrayInterfaceCore v0.1.29 ⌅ [a9b6321e] Atomix v0.1.0 ⌅ [15f4f7f2] AutoHashEquals v0.2.0 ⌃ [13072b0f] AxisAlgorithms v1.0.1 [39de3d68] AxisArrays v0.4.7 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 ⌅ [e2ed5e7c] Bijections v0.1.10 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 ⌅ [fa961155] CEnum v0.4.2 [2a0fbf3d] CPUSummary v0.2.6 [00ebfdb7] CSTParser v3.4.3 [336ed68f] CSV v0.10.15 [49dc2e85] Calculus v0.5.2 [7057c7e9] 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/L4cjh/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonPlot/oS8x4/CondaPkg.toml CondaPkg Resolving changes + matplotlib + openssl + python CondaPkg Creating environment │ /home/pkgeval/.julia/artifacts/7973f2c7725e2d0eef7a95159454c4145f0945a2/bin/micromamba │ -r /home/pkgeval/.julia/scratchspaces/0b3b1443-0f03-428d-bdfb-f27f9c1191ea/root │ create │ -y │ -p /tmp/jl_gV5rEL/.CondaPkg/env │ --override-channels │ matplotlib[version='>=1'] │ openssl[version='>=3, <3.6'] │ python[version='>=3.8,<4',channel='conda-forge',build='*cpython*'] └ -c conda-forge conda-forge/linux-64 Using cache conda-forge/noarch Using cache Transaction Prefix: /tmp/jl_gV5rEL/.CondaPkg/env Updating specs: - matplotlib[version='>=1'] - openssl[version='>=3, <3.6'] - conda-forge::python[version='>=3.8,<4',build=*cpython*] Package Version Build Channel Size 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+ lerc 4.0.0 h0aef613_1 conda-forge Cached + libstdcxx-ng 15.1.0 h4852527_2 conda-forge Cached + zstd 1.5.7 hb8e6e7a_2 conda-forge Cached + double-conversion 3.3.1 h5888daf_0 conda-forge Cached + libpciaccess 0.18 hd590300_0 conda-forge Cached + keyutils 1.6.1 h166bdaf_0 conda-forge Cached + libxcrypt 4.4.36 hd590300_1 conda-forge Cached + bzip2 1.0.8 h4bc722e_7 conda-forge Cached + libuuid 2.38.1 h0b41bf4_0 conda-forge Cached + libnsl 2.0.1 hd590300_0 conda-forge Cached + wayland 1.23.1 h3e06ad9_1 conda-forge Cached + libopenblas 0.3.29 pthreads_h94d23a6_0 conda-forge Cached + brotli-bin 1.1.0 hb9d3cd8_3 conda-forge Cached + xorg-libx11 1.8.12 h4f16b4b_0 conda-forge Cached + xcb-util-wm 0.4.2 hb711507_0 conda-forge Cached + xcb-util-renderutil 0.3.10 hb711507_0 conda-forge Cached + xcb-util-keysyms 0.4.1 hb711507_0 conda-forge Cached + xcb-util 0.4.1 hb711507_2 conda-forge Cached + libfreetype6 2.13.3 h48d6fc4_1 conda-forge Cached + graphite2 1.3.13 h59595ed_1003 conda-forge Cached + icu 75.1 he02047a_0 conda-forge Cached + qhull 2020.2 h434a139_5 conda-forge Cached + libtiff 4.7.0 hf01ce69_5 conda-forge Cached + libdrm 2.4.124 hb9d3cd8_0 conda-forge Cached + pcre2 10.45 hc749103_0 conda-forge Cached + xorg-libsm 1.2.6 he73a12e_0 conda-forge Cached + libblas 3.9.0 31_h59b9bed_openblas conda-forge Cached + brotli 1.1.0 hb9d3cd8_3 conda-forge Cached + libglx 1.7.0 ha4b6fd6_2 conda-forge Cached + xorg-libxrender 0.9.12 hb9d3cd8_0 conda-forge Cached + xkeyboard-config 2.45 hb9d3cd8_0 conda-forge Cached + xorg-libxfixes 6.0.1 hb9d3cd8_0 conda-forge Cached + xorg-libxext 1.3.6 hb9d3cd8_0 conda-forge Cached + xcb-util-image 0.4.0 hb711507_2 conda-forge Cached + libfreetype 2.13.3 ha770c72_1 conda-forge Cached + libxml2 2.13.8 h4bc477f_0 conda-forge Cached + openjpeg 2.5.3 h5fbd93e_0 conda-forge Cached + lcms2 2.17 h717163a_0 conda-forge Cached + libglib 2.84.2 h3618099_0 conda-forge Cached + libcblas 3.9.0 31_he106b2a_openblas conda-forge Cached + liblapack 3.9.0 31_h7ac8fdf_openblas conda-forge Cached + libgl 1.7.0 ha4b6fd6_2 conda-forge Cached + xorg-libxcomposite 0.4.6 hb9d3cd8_2 conda-forge Cached + xorg-libxcursor 1.2.3 hb9d3cd8_0 conda-forge Cached + xorg-libxi 1.8.2 hb9d3cd8_0 conda-forge Cached + xorg-libxxf86vm 1.1.6 hb9d3cd8_0 conda-forge Cached + xorg-libxrandr 1.5.4 hb9d3cd8_0 conda-forge Cached + xorg-libxdamage 1.1.6 hb9d3cd8_0 conda-forge Cached + xcb-util-cursor 0.1.5 hb9d3cd8_0 conda-forge Cached + freetype 2.13.3 ha770c72_1 conda-forge Cached + libxkbcommon 1.10.0 h65c71a3_0 conda-forge Cached + libllvm20 20.1.6 he9d0ab4_0 conda-forge Cached + libxslt 1.1.39 h76b75d6_0 conda-forge Cached + dbus 1.16.2 h3c4dab8_0 conda-forge Cached + xorg-libxtst 1.2.5 hb9d3cd8_3 conda-forge Cached + fontconfig 2.15.0 h7e30c49_1 conda-forge Cached + libclang-cpp20.1 20.1.6 default_h1df26ce_0 conda-forge Cached + libclang13 20.1.6 default_he06ed0a_0 conda-forge Cached + tzdata 2025b h78e105d_0 conda-forge Cached + ca-certificates 2025.4.26 hbd8a1cb_0 conda-forge Cached + python_abi 3.12 7_cp312 conda-forge Cached + font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge Cached + font-ttf-inconsolata 3.000 h77eed37_0 conda-forge Cached + font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge Cached + font-ttf-ubuntu 0.83 h77eed37_3 conda-forge Cached + fonts-conda-forge 1 0 conda-forge Cached + fonts-conda-ecosystem 1 0 conda-forge Cached + openssl 3.5.0 h7b32b05_1 conda-forge Cached + cairo 1.18.4 h3394656_0 conda-forge Cached + krb5 1.21.3 h659f571_0 conda-forge Cached + python 3.12.11 h9e4cc4f_0_cpython conda-forge Cached + harfbuzz 11.2.1 h3beb420_0 conda-forge Cached + cyrus-sasl 2.1.27 h54b06d7_7 conda-forge Cached + libcups 2.3.3 h4637d8d_4 conda-forge Cached + openldap 2.6.10 he970967_0 conda-forge Cached + libpq 17.5 h27ae623_0 conda-forge Cached + qt6-main 6.9.1 h0384650_0 conda-forge Cached + wheel 0.45.1 pyhd8ed1ab_1 conda-forge Cached + setuptools 80.9.0 pyhff2d567_0 conda-forge Cached + pip 25.1.1 pyh8b19718_0 conda-forge Cached + six 1.17.0 pyhd8ed1ab_0 conda-forge Cached + munkres 1.1.4 pyh9f0ad1d_0 conda-forge Cached + pyparsing 3.2.3 pyhd8ed1ab_1 conda-forge Cached + packaging 25.0 pyh29332c3_1 conda-forge Cached + cycler 0.12.1 pyhd8ed1ab_1 conda-forge Cached + python-dateutil 2.9.0.post0 pyhff2d567_1 conda-forge Cached + unicodedata2 16.0.0 py312h66e93f0_0 conda-forge Cached + pyside6 6.9.1 py312hdb827e4_0 conda-forge Cached + tornado 6.5.1 py312h66e93f0_0 conda-forge Cached + pillow 11.2.1 py312h80c1187_0 conda-forge Cached + numpy 2.3.0 py312h6cf2f7f_0 conda-forge Cached + kiwisolver 1.4.8 py312h84d6215_0 conda-forge Cached + fonttools 4.58.2 py312h178313f_0 conda-forge Cached + contourpy 1.3.2 py312h68727a3_0 conda-forge Cached + matplotlib-base 3.10.3 py312hd3ec401_0 conda-forge Cached + matplotlib 3.10.3 py312h7900ff3_0 conda-forge Cached Summary: Install: 133 packages Total download: 0 B ─────────────────────────────────────────────────────────────────────────────────────────── Transaction starting Linking ld_impl_linux-64-2.43-h712a8e2_4 Linking _libgcc_mutex-0.1-conda_forge Linking libgomp-15.1.0-h767d61c_2 Linking libglvnd-1.7.0-ha4b6fd6_2 Linking _openmp_mutex-4.5-2_gnu Linking libopengl-1.7.0-ha4b6fd6_2 Linking libegl-1.7.0-ha4b6fd6_2 Linking libgcc-15.1.0-h767d61c_2 Linking libgfortran5-15.1.0-hcea5267_2 Linking libntlm-1.8-hb9d3cd8_0 Linking libbrotlicommon-1.1.0-hb9d3cd8_3 Linking libdeflate-1.24-h86f0d12_0 Linking xorg-libxdmcp-1.1.5-hb9d3cd8_0 Linking pthread-stubs-0.4-hb9d3cd8_1002 Linking libiconv-1.18-h4ce23a2_1 Linking xorg-libxau-1.0.12-hb9d3cd8_0 Linking xorg-libice-1.1.2-hb9d3cd8_0 Linking alsa-lib-1.2.14-hb9d3cd8_0 Linking libwebp-base-1.5.0-h851e524_0 Linking libjpeg-turbo-3.1.0-hb9d3cd8_0 Linking ncurses-6.5-h2d0b736_3 Linking libzlib-1.3.1-hb9d3cd8_2 Linking liblzma-5.8.1-hb9d3cd8_2 Linking libstdcxx-15.1.0-h8f9b012_2 Linking libgcc-ng-15.1.0-h69a702a_2 Linking libffi-3.4.6-h2dba641_1 Linking libexpat-2.7.0-h5888daf_0 Linking libgfortran-15.1.0-h69a702a_2 Linking libbrotlienc-1.1.0-hb9d3cd8_3 Linking libbrotlidec-1.1.0-hb9d3cd8_3 Linking libxcb-1.17.0-h8a09558_0 Linking libedit-3.1.20250104-pl5321h7949ede_0 Linking readline-8.2-h8c095d6_2 Linking tk-8.6.13-noxft_hd72426e_102 Linking libsqlite-3.50.1-hee588c1_0 Linking libpng-1.6.47-h943b412_0 Linking pixman-0.46.0-h29eaf8c_0 Linking lerc-4.0.0-h0aef613_1 Linking libstdcxx-ng-15.1.0-h4852527_2 Linking zstd-1.5.7-hb8e6e7a_2 Linking double-conversion-3.3.1-h5888daf_0 Linking libpciaccess-0.18-hd590300_0 Linking keyutils-1.6.1-h166bdaf_0 Linking libxcrypt-4.4.36-hd590300_1 Linking bzip2-1.0.8-h4bc722e_7 Linking libuuid-2.38.1-h0b41bf4_0 Linking libnsl-2.0.1-hd590300_0 Linking wayland-1.23.1-h3e06ad9_1 Linking libopenblas-0.3.29-pthreads_h94d23a6_0 Linking brotli-bin-1.1.0-hb9d3cd8_3 Linking xorg-libx11-1.8.12-h4f16b4b_0 Linking xcb-util-wm-0.4.2-hb711507_0 Linking xcb-util-renderutil-0.3.10-hb711507_0 Linking xcb-util-keysyms-0.4.1-hb711507_0 Linking xcb-util-0.4.1-hb711507_2 Linking libfreetype6-2.13.3-h48d6fc4_1 Linking graphite2-1.3.13-h59595ed_1003 Linking icu-75.1-he02047a_0 Linking qhull-2020.2-h434a139_5 Linking libtiff-4.7.0-hf01ce69_5 Linking libdrm-2.4.124-hb9d3cd8_0 Linking pcre2-10.45-hc749103_0 Linking xorg-libsm-1.2.6-he73a12e_0 Linking libblas-3.9.0-31_h59b9bed_openblas Linking brotli-1.1.0-hb9d3cd8_3 Linking libglx-1.7.0-ha4b6fd6_2 Linking xorg-libxrender-0.9.12-hb9d3cd8_0 Linking xkeyboard-config-2.45-hb9d3cd8_0 Linking xorg-libxfixes-6.0.1-hb9d3cd8_0 Linking xorg-libxext-1.3.6-hb9d3cd8_0 Linking xcb-util-image-0.4.0-hb711507_2 Linking libfreetype-2.13.3-ha770c72_1 Linking libxml2-2.13.8-h4bc477f_0 Linking openjpeg-2.5.3-h5fbd93e_0 Linking lcms2-2.17-h717163a_0 Linking libglib-2.84.2-h3618099_0 Linking libcblas-3.9.0-31_he106b2a_openblas Linking liblapack-3.9.0-31_h7ac8fdf_openblas Linking libgl-1.7.0-ha4b6fd6_2 Linking xorg-libxcomposite-0.4.6-hb9d3cd8_2 Linking xorg-libxcursor-1.2.3-hb9d3cd8_0 Linking xorg-libxi-1.8.2-hb9d3cd8_0 Linking xorg-libxxf86vm-1.1.6-hb9d3cd8_0 Linking xorg-libxrandr-1.5.4-hb9d3cd8_0 Linking xorg-libxdamage-1.1.6-hb9d3cd8_0 Linking xcb-util-cursor-0.1.5-hb9d3cd8_0 Linking freetype-2.13.3-ha770c72_1 Linking libxkbcommon-1.10.0-h65c71a3_0 Linking libllvm20-20.1.6-he9d0ab4_0 Linking libxslt-1.1.39-h76b75d6_0 Linking dbus-1.16.2-h3c4dab8_0 Linking xorg-libxtst-1.2.5-hb9d3cd8_3 Linking fontconfig-2.15.0-h7e30c49_1 Linking libclang-cpp20.1-20.1.6-default_h1df26ce_0 Linking libclang13-20.1.6-default_he06ed0a_0 Linking tzdata-2025b-h78e105d_0 Linking ca-certificates-2025.4.26-hbd8a1cb_0 Linking python_abi-3.12-7_cp312 Linking font-ttf-dejavu-sans-mono-2.37-hab24e00_0 Linking font-ttf-inconsolata-3.000-h77eed37_0 Linking font-ttf-source-code-pro-2.038-h77eed37_0 Linking font-ttf-ubuntu-0.83-h77eed37_3 Linking fonts-conda-forge-1-0 Linking fonts-conda-ecosystem-1-0 Linking openssl-3.5.0-h7b32b05_1 Linking cairo-1.18.4-h3394656_0 Linking krb5-1.21.3-h659f571_0 Linking python-3.12.11-h9e4cc4f_0_cpython Linking harfbuzz-11.2.1-h3beb420_0 Linking cyrus-sasl-2.1.27-h54b06d7_7 Linking libcups-2.3.3-h4637d8d_4 Linking openldap-2.6.10-he970967_0 Linking libpq-17.5-h27ae623_0 Linking qt6-main-6.9.1-h0384650_0 Linking wheel-0.45.1-pyhd8ed1ab_1 Linking setuptools-80.9.0-pyhff2d567_0 Linking pip-25.1.1-pyh8b19718_0 Linking six-1.17.0-pyhd8ed1ab_0 Linking munkres-1.1.4-pyh9f0ad1d_0 Linking pyparsing-3.2.3-pyhd8ed1ab_1 Linking packaging-25.0-pyh29332c3_1 Linking cycler-0.12.1-pyhd8ed1ab_1 Linking python-dateutil-2.9.0.post0-pyhff2d567_1 Linking unicodedata2-16.0.0-py312h66e93f0_0 Linking pyside6-6.9.1-py312hdb827e4_0 Linking tornado-6.5.1-py312h66e93f0_0 Linking pillow-11.2.1-py312h80c1187_0 Linking numpy-2.3.0-py312h6cf2f7f_0 Linking kiwisolver-1.4.8-py312h84d6215_0 Linking fonttools-4.58.2-py312h178313f_0 Linking contourpy-1.3.2-py312h68727a3_0 Linking matplotlib-base-3.10.3-py312hd3ec401_0 Linking matplotlib-3.10.3-py312h7900ff3_0 Transaction finished To activate this environment, use: micromamba activate /tmp/jl_gV5rEL/.CondaPkg/env Or to execute a single command in this environment, use: micromamba run -p /tmp/jl_gV5rEL/.CondaPkg/env mycommand CondaPkg Found dependencies: /tmp/jl_gV5rEL/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/L4cjh/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonPlot/oS8x4/CondaPkg.toml CondaPkg Resolving changes ~ matplotlib + pydot ~ python + rdkit + rmgmolecule CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/7973f2c7725e2d0eef7a95159454c4145f0945a2/bin/micromamba │ -r /home/pkgeval/.julia/scratchspaces/0b3b1443-0f03-428d-bdfb-f27f9c1191ea/root │ install │ -y │ -p /tmp/jl_gV5rEL/.CondaPkg/env │ --override-channels │ matplotlib[version='>=1',channel='conda-forge'] │ openssl[version='>=3, <3.6'] │ pydot[version='>=2.0',channel='conda-forge'] │ python[version='3.9, >=3.8,<4',channel='conda-forge',build='*cpython*'] │ rdkit[version='*',channel='conda-forge'] │ rmgmolecule[version='>=0.3.0',channel='mjohnson541'] └ -c conda-forge conda-forge/linux-64 Using cache conda-forge/noarch Using cache mjohnson541/linux-64 Using cache mjohnson541/noarch Using cache error libmamba Could not solve for environment specs The following packages are incompatible ├─ openssl >=3,<3.6 is requested and can be installed; └─ python 3.9,>=3.8,<4 *cpython* is not installable because it requires └─ openssl >=1.1.1h,<1.1.2a , which conflicts with any installable versions previously reported. critical libmamba Could not solve for environment specs ERROR: LoadError: failed process: Process(`/home/pkgeval/.julia/artifacts/7973f2c7725e2d0eef7a95159454c4145f0945a2/bin/micromamba -r /home/pkgeval/.julia/scratchspaces/0b3b1443-0f03-428d-bdfb-f27f9c1191ea/root install -y -p /tmp/jl_gV5rEL/.CondaPkg/env --override-channels "matplotlib[version='>=1',channel='conda-forge']" "openssl[version='>=3, <3.6']" "pydot[version='>=2.0',channel='conda-forge']" "python[version='3.9, >=3.8,<4',channel='conda-forge',build='*cpython*']" "rdkit[version='*',channel='conda-forge']" "rmgmolecule[version='>=0.3.0',channel='mjohnson541']" -c conda-forge`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run(::Cmd) @ Base ./process.jl:514 [4] _run(io::IO, cmd::Cmd, args::Any; flags::Any) @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:715 [5] _resolve_conda_install(io::Any, conda_env::Any, specs::Any, channels::Any; create::Any) @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:594 [6] _resolve_conda_install(io::Any, conda_env::Any, specs::Any, channels::Any) @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:564 [7] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool) @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:910 [8] resolve() @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:718 [9] top-level scope @ ~/.julia/packages/ReactionMechanismSimulator/EureN/src/rmstest.jl:22 [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [11] top-level scope @ ~/.julia/packages/ReactionMechanismSimulator/EureN/test/runtests.jl:2 [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:290 [16] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/ReactionMechanismSimulator/EureN/src/rmstest.jl:8 in expression starting at /home/pkgeval/.julia/packages/ReactionMechanismSimulator/EureN/test/runtests.jl:2 Testing failed after 56.64s ERROR: LoadError: Package ReactionMechanismSimulator errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2421 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2276 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:498 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:309 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:324 [12] _start() @ Base ./client.jl:557 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1481.4s: package fails to precompile