Package evaluation of Packmol on Julia 1.13.0-DEV.717 (51214a7524*) started at 2025-06-08T20:44:51.562 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.02s ################################################################################ # Installation # Installing Packmol... Resolving package versions... Installed Gettext_jll ─────────────── v0.21.0+0 Installed Libuuid_jll ─────────────── v2.41.0+0 Installed HarfBuzz_jll ────────────── v8.5.1+0 Installed JpegTurbo_jll ───────────── v3.1.1+0 Installed MacroTools ──────────────── v0.5.16 Installed Packmol ─────────────────── v0.1.12 Installed FilePathsBase ───────────── v0.9.24 Installed Dbus_jll ────────────────── v1.16.2+0 Installed Bzip2_jll ───────────────── v1.0.9+0 Installed Libmount_jll ────────────── v2.41.0+0 Installed Libtiff_jll ─────────────── v4.7.1+0 Installed ConstructionBase ────────── v1.5.8 Installed CellListMap ─────────────── v0.9.10 Installed ChunkSplitters ──────────── v3.1.2 Installed Cairo_jll ───────────────── v1.18.5+0 Installed Xorg_libXinerama_jll ────── v1.1.6+0 Installed Xorg_libXau_jll ─────────── v1.0.13+0 Installed OrderedCollections ──────── v1.8.1 Installed Xorg_libX11_jll ─────────── v1.8.12+0 Installed Compat ──────────────────── v4.16.0 Installed Xorg_libXdamage_jll ─────── v1.1.6+0 Installed Graphite2_jll ───────────── v1.3.15+0 Installed Wayland_protocols_jll ───── v1.36.0+0 Installed Packmol_jll ─────────────── v21.0.2+0 Installed Xorg_libXi_jll ──────────── v1.8.3+0 Installed Xorg_libXfixes_jll ──────── v6.0.1+0 Installed Statistics ──────────────── v1.11.1 Installed PrecompileTools ─────────── v1.3.2 Installed Xorg_libXtst_jll ────────── v1.2.5+0 Installed Wayland_jll ─────────────── v1.23.1+0 Installed ProgressMeter ───────────── v1.10.4 Installed NativeFileDialog ────────── v0.2.1 Installed Xorg_libXcomposite_jll ──── v0.4.6+0 Installed Libffi_jll ──────────────── v3.4.7+0 Installed ATK_jll ─────────────────── v2.38.1+0 Installed StaticArraysCore ────────── v1.4.3 Installed StaticArrays ────────────── v1.9.13 Installed at_spi2_atk_jll ─────────── v2.38.0+0 Installed Pixman_jll ──────────────── v0.44.2+0 Installed SPGBox ──────────────────── v0.7.2 Installed Fontconfig_jll ──────────── v2.16.0+0 Installed Expat_jll ───────────────── v2.6.5+0 Installed Libglvnd_jll ────────────── v1.7.1+1 Installed Xorg_libxkbfile_jll ─────── v1.1.3+0 Installed libpng_jll ──────────────── v1.6.48+0 Installed xkbcommon_jll ───────────── v1.8.1+0 Installed Xorg_libXcursor_jll ─────── v1.2.4+0 Installed Libepoxy_jll ────────────── v1.5.10+0 Installed Xorg_libXrender_jll ─────── v0.9.12+0 Installed Glib_jll ────────────────── v2.84.0+0 Installed FriBidi_jll ─────────────── v1.0.17+0 Installed Xorg_xkbcomp_jll ────────── v1.4.7+0 Installed Xorg_libxcb_jll ─────────── v1.17.1+0 Installed Parameters ──────────────── v0.12.3 Installed LZO_jll ─────────────────── v2.10.3+0 Installed Xorg_xkeyboard_config_jll ─ v2.44.0+0 Installed XML2_jll ────────────────── v2.13.6+1 Installed Xorg_libXdmcp_jll ───────── v1.1.6+0 Installed NativeFileDialog_jll ────── v1.1.6+3 Installed Setfield ────────────────── v1.1.2 Installed iso_codes_jll ───────────── v4.17.0+0 Installed LERC_jll ────────────────── v4.0.1+0 Installed TestItems ───────────────── v1.0.0 Installed Libiconv_jll ────────────── v1.18.0+0 Installed FreeType2_jll ───────────── v2.13.4+0 Installed GTK3_jll ────────────────── v3.24.31+0 Installed JLLWrappers ─────────────── v1.7.0 Installed Preferences ─────────────── v1.4.3 Installed gdk_pixbuf_jll ──────────── v2.42.13+0 Installed LLVMOpenMP_jll ──────────── v18.1.8+0 Installed XZ_jll ──────────────────── v5.8.1+0 Installed Xorg_libXext_jll ────────── v1.3.7+0 Installed Pango_jll ───────────────── v1.56.3+0 Installed Xorg_libXrandr_jll ──────── v1.5.5+0 Installed EpollShim_jll ───────────── v0.0.20230411+1 Installed UnPack ──────────────────── v1.0.2 Installed Xorg_xtrans_jll ─────────── v1.6.0+0 Installed DocStringExtensions ─────── v0.9.5 Installed at_spi2_core_jll ────────── v2.56.2+0 Installing 56 artifacts Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact FriBidi 78.9 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact xkbcommon 653.4 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact at_spi2_atk 94.8 KiB Installed artifact Cairo 2.2 MiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact JpegTurbo 1.6 MiB Installed artifact NativeFileDialog 18.3 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Pixman 372.2 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Libffi 44.2 KiB Installed artifact Libiconv 1.9 MiB Installed artifact Wayland_protocols 129.5 KiB Installed artifact LERC 272.9 KiB Installed artifact Libepoxy 1.2 MiB Installed artifact at_spi2_core 1.3 MiB Installed artifact gdk_pixbuf 943.6 KiB Installed artifact Fontconfig 522.5 KiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact Gettext 4.5 MiB Installed artifact LZO 208.9 KiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact Libtiff 3.2 MiB Installed artifact Dbus 489.8 KiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact Xorg_libXdamage 50.0 KiB Installed artifact XML2 2.5 MiB Installed artifact Packmol 126.8 KiB Installed artifact Xorg_libXfixes 195.9 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact Expat 271.4 KiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact Pango 1.1 MiB Installed artifact Glib 7.7 MiB Installed artifact ATK 469.5 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact Wayland 434.3 KiB Installed artifact libpng 328.3 KiB Installed artifact Graphite2 120.2 KiB Installed artifact Xorg_libXcomposite 54.5 KiB Installed artifact Libmount 6.4 MiB Installed artifact iso_codes 7.0 MiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Xorg_libXtst 136.9 KiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact FreeType2 1.5 MiB Installed artifact XZ 1.5 MiB Installed artifact Libuuid 3.5 MiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact GTK3 21.9 MiB Updating `~/.julia/environments/v1.13/Project.toml` [6cdf86f9] + Packmol v0.1.12 Updating `~/.julia/environments/v1.13/Manifest.toml` [69e1c6dd] + CellListMap v0.9.10 [ae650224] + ChunkSplitters v3.1.2 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [ffbed154] + DocStringExtensions v0.9.5 [48062228] + FilePathsBase v0.9.24 [692b3bcd] + JLLWrappers v1.7.0 [1914dd2f] + MacroTools v0.5.16 [e1fe445b] + NativeFileDialog v0.2.1 [bac558e1] + OrderedCollections v1.8.1 [6cdf86f9] + Packmol v0.1.12 [d96e819e] + Parameters v0.12.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [bf97046b] + SPGBox v0.7.2 [efcf1570] + Setfield v1.1.2 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [1c621080] + TestItems v1.0.0 [3a884ed6] + UnPack v1.0.2 [7b86fcea] + ATK_jll v2.38.1+0 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [ee1fde0b] + Dbus_jll v1.16.2+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.6.5+0 [a3f928ae] + Fontconfig_jll v2.16.0+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [77ec8976] + GTK3_jll v3.24.31+0 [78b55507] + Gettext_jll v0.21.0+0 [7746bdde] + Glib_jll v2.84.0+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [aacddb02] + JpegTurbo_jll v3.1.1+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [42c93a91] + Libepoxy_jll v1.5.10+0 [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.0+0 [89763e89] + Libtiff_jll v4.7.1+0 [38a345b3] + Libuuid_jll v2.41.0+0 [94d9ae2c] + NativeFileDialog_jll v1.1.6+3 [eb89d173] + Packmol_jll v21.0.2+0 [36c8627f] + Pango_jll v1.56.3+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [a2964d1f] + Wayland_jll v1.23.1+0 [2381bf8a] + Wayland_protocols_jll v1.36.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.6+1 [ffd25f8a] + XZ_jll v5.8.1+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [3c9796d7] + Xorg_libXcomposite_jll v0.4.6+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [0aeada51] + Xorg_libXdamage_jll v1.1.6+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.1+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.6+0 [ec84b674] + Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [b6f176f1] + Xorg_libXtst_jll v1.2.5+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [cc61e674] + Xorg_libxkbfile_jll v1.1.3+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [de012916] + at_spi2_atk_jll v2.38.0+0 [0fc3237b] + at_spi2_core_jll v2.56.2+0 [da03df04] + gdk_pixbuf_jll v2.42.13+0 [bf975903] + iso_codes_jll v4.17.0+0 [b53b4c65] + libpng_jll v1.6.48+0 [d8fb68d0] + xkbcommon_jll v1.8.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.0+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 19.08s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4736.9 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 25 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 2 direct dependencies failed to precompile: Packmol Failed to precompile Packmol [6cdf86f9-9676-4cea-a42d-19f9a563443f] to "/home/pkgeval/.julia/compiled/v1.13/Packmol/jl_CoIlGU" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `Cell` not defined in `CellListMap` Suggestion: define the const at top-level before running function that uses it (stricter Julia v1.12+ rule). Note: the binding state changed since the error occurred (was: 11, now: 0). Stacktrace: [1] #s27#1 @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:30 [inlined] [2] var"#s27#1"(T::Any, ::Any, ::Any) @ ConstructionBase ./none:0 [3] (::Core.GeneratedFunctionStub)(::UInt64, ::Method, ::Any, ::Vararg{Any}) @ Base ./expr.jl:1703 [4] macro expansion @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:195 [inlined] [5] setfields_object(obj::CellListMap.Cell{3, Float64}, patch::@NamedTuple{n_particles::Int64}) @ ConstructionBase ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:195 [6] setproperties_object @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:208 [inlined] [7] setproperties @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:136 [inlined] [8] set @ ~/.julia/packages/Setfield/ZezIj/src/lens.jl:122 [inlined] [9] modify @ ~/.julia/packages/Setfield/ZezIj/src/lens.jl:106 [inlined] [10] macro expansion @ ~/.julia/packages/Setfield/ZezIj/src/sugar.jl:205 [inlined] [11] add_particle_to_celllist!(ip::Int64, x::StaticArraysCore.SVector{3, Float64}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}, cl::CellListMap.CellList{3, Float64}; real_particle::Bool) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:1019 [12] add_particle_to_celllist! @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:976 [inlined] [13] add_particles!(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}, ishift::Int64, cl::CellListMap.CellList{3, Float64}) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:830 [14] UpdateCellList!(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}, cl::CellListMap.CellList{3, Float64}, aux::CellListMap.AuxThreaded{3, Float64}; parallel::Bool, validate_coordinates::typeof(CellListMap._validate_coordinates)) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:752 [15] UpdateCellList! @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:729 [inlined] [16] #UpdateCellList!#58 @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:635 [inlined] [17] UpdateCellList! @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:626 [inlined] [18] CellListMap.CellList(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}; parallel::Bool, nbatches::Tuple{Int64, Int64}, validate_coordinates::typeof(CellListMap._validate_coordinates)) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:466 [19] CellListMap.CellList(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:457 [20] macro expansion @ ~/.julia/packages/CellListMap/NHSF1/src/precompile.jl:16 [inlined] [21] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [22] macro expansion @ ~/.julia/packages/CellListMap/NHSF1/src/precompile.jl:15 [inlined] [23] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [24] top-level scope @ ~/.julia/packages/CellListMap/NHSF1/src/precompile.jl:3 [25] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [26] top-level scope @ ~/.julia/packages/CellListMap/NHSF1/src/CellListMap.jl:166 [27] include(mod::Module, _path::String) @ Base ./Base.jl:309 [28] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [29] top-level scope @ stdin:5 [30] eval(m::Module, e::Any) @ Core ./boot.jl:489 [31] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [32] include_string @ ./loading.jl:2856 [inlined] [33] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [34] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/CellListMap/NHSF1/src/precompile.jl:2 in expression starting at /home/pkgeval/.julia/packages/CellListMap/NHSF1/src/CellListMap.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile CellListMap [69e1c6dd-3888-40e6-b3c8-31ac5f578864] to "/home/pkgeval/.julia/compiled/v1.13/CellListMap/jl_4irzZE" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#232 @ ./reflection.jl:1282 [inlined] [8] invokelatest_gr @ ./reflection.jl:1274 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [10] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [13] macro expansion @ ./loading.jl:2394 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [16] require @ ./loading.jl:2335 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) @ Base ./module.jl:111 [19] top-level scope @ ~/.julia/packages/Packmol/b5E9B/src/Packmol.jl:6 [20] include(mod::Module, _path::String) @ Base ./Base.jl:309 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [22] top-level scope @ stdin:5 [23] eval(m::Module, e::Any) @ Core ./boot.jl:489 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [25] include_string @ ./loading.jl:2856 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [27] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Packmol/b5E9B/src/Packmol.jl:1 in expression starting at stdin:5 CellListMap Failed to precompile CellListMap [69e1c6dd-3888-40e6-b3c8-31ac5f578864] to "/home/pkgeval/.julia/compiled/v1.13/CellListMap/jl_DMeqXg" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `Cell` not defined in `CellListMap` Suggestion: define the const at top-level before running function that uses it (stricter Julia v1.12+ rule). Note: the binding state changed since the error occurred (was: 11, now: 0). Stacktrace: [1] #s27#1 @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:30 [inlined] [2] var"#s27#1"(T::Any, ::Any, ::Any) @ ConstructionBase ./none:0 [3] (::Core.GeneratedFunctionStub)(::UInt64, ::Method, ::Any, ::Vararg{Any}) @ Base ./expr.jl:1703 [4] macro expansion @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:195 [inlined] [5] setfields_object(obj::CellListMap.Cell{3, Float64}, patch::@NamedTuple{n_particles::Int64}) @ ConstructionBase ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:195 [6] setproperties_object @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:208 [inlined] [7] setproperties @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:136 [inlined] [8] set @ ~/.julia/packages/Setfield/ZezIj/src/lens.jl:122 [inlined] [9] modify @ ~/.julia/packages/Setfield/ZezIj/src/lens.jl:106 [inlined] [10] macro expansion @ ~/.julia/packages/Setfield/ZezIj/src/sugar.jl:205 [inlined] [11] add_particle_to_celllist!(ip::Int64, x::StaticArraysCore.SVector{3, Float64}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}, cl::CellListMap.CellList{3, Float64}; real_particle::Bool) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:1019 [12] add_particle_to_celllist! @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:976 [inlined] [13] add_particles!(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}, ishift::Int64, cl::CellListMap.CellList{3, Float64}) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:830 [14] UpdateCellList!(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}, cl::CellListMap.CellList{3, Float64}, aux::CellListMap.AuxThreaded{3, Float64}; parallel::Bool, validate_coordinates::typeof(CellListMap._validate_coordinates)) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:752 [15] UpdateCellList! @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:729 [inlined] [16] #UpdateCellList!#58 @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:635 [inlined] [17] UpdateCellList! @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:626 [inlined] [18] CellListMap.CellList(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}; parallel::Bool, nbatches::Tuple{Int64, Int64}, validate_coordinates::typeof(CellListMap._validate_coordinates)) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:466 [19] CellListMap.CellList(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:457 [20] macro expansion @ ~/.julia/packages/CellListMap/NHSF1/src/precompile.jl:16 [inlined] [21] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [22] macro expansion @ ~/.julia/packages/CellListMap/NHSF1/src/precompile.jl:15 [inlined] [23] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [24] top-level scope @ ~/.julia/packages/CellListMap/NHSF1/src/precompile.jl:3 [25] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [26] top-level scope @ ~/.julia/packages/CellListMap/NHSF1/src/CellListMap.jl:166 [27] include(mod::Module, _path::String) @ Base ./Base.jl:309 [28] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [29] top-level scope @ stdin:5 [30] eval(m::Module, e::Any) @ Core ./boot.jl:489 [31] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [32] include_string @ ./loading.jl:2856 [inlined] [33] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [34] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/CellListMap/NHSF1/src/precompile.jl:2 in expression starting at /home/pkgeval/.julia/packages/CellListMap/NHSF1/src/CellListMap.jl:1 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 265.98s ################################################################################ # Testing # Testing Packmol Status `/tmp/jl_gxOoWz/Project.toml` [4c88cf16] Aqua v0.8.13 [69e1c6dd] CellListMap v0.9.10 [26cc04aa] FiniteDifferences v0.12.32 ⌅ [f6369f11] ForwardDiff v0.10.38 [e1fe445b] NativeFileDialog v0.2.1 [6cdf86f9] Packmol v0.1.12 [d96e819e] Parameters v0.12.3 [bf97046b] SPGBox v0.7.2 [90137ffa] StaticArrays v1.9.13 [10745b16] Statistics v1.11.1 [f8b46487] TestItemRunner v1.1.0 [1c621080] TestItems v1.0.0 [eb89d173] Packmol_jll v21.0.2+0 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_gxOoWz/Manifest.toml` [4c88cf16] Aqua v0.8.13 [69e1c6dd] CellListMap v0.9.10 [d360d2e6] ChainRulesCore v1.25.1 [ae650224] ChunkSplitters v3.1.2 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [187b0558] ConstructionBase v1.5.8 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.5 [48062228] FilePathsBase v0.9.24 [26cc04aa] FiniteDifferences v0.12.32 ⌅ [f6369f11] ForwardDiff v0.10.38 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [77ba4419] NaNMath v1.1.3 [e1fe445b] NativeFileDialog v0.2.1 [bac558e1] OrderedCollections v1.8.1 [6cdf86f9] Packmol v0.1.12 [d96e819e] Parameters v0.12.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [92933f4c] ProgressMeter v1.10.4 [708f8203] Richardson v1.4.2 [bf97046b] SPGBox v0.7.2 [efcf1570] Setfield v1.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [f8b46487] TestItemRunner v1.1.0 [1c621080] TestItems v1.0.0 [3a884ed6] UnPack v1.0.2 [7b86fcea] ATK_jll v2.38.1+0 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.5+0 [ee1fde0b] Dbus_jll v1.16.2+0 [2702e6a9] EpollShim_jll v0.0.20230411+1 [2e619515] Expat_jll v2.6.5+0 [a3f928ae] Fontconfig_jll v2.16.0+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [77ec8976] GTK3_jll v3.24.31+0 [78b55507] Gettext_jll v0.21.0+0 [7746bdde] Glib_jll v2.84.0+0 [3b182d85] Graphite2_jll v1.3.15+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [aacddb02] JpegTurbo_jll v3.1.1+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 [42c93a91] Libepoxy_jll v1.5.10+0 [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.0+0 [89763e89] Libtiff_jll v4.7.1+0 [38a345b3] Libuuid_jll v2.41.0+0 [94d9ae2c] NativeFileDialog_jll v1.1.6+3 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [eb89d173] Packmol_jll v21.0.2+0 [36c8627f] Pango_jll v1.56.3+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [a2964d1f] Wayland_jll v1.23.1+0 [2381bf8a] Wayland_protocols_jll v1.36.0+0 ⌅ [02c8fc9c] XML2_jll v2.13.6+1 [ffd25f8a] XZ_jll v5.8.1+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [3c9796d7] Xorg_libXcomposite_jll v0.4.6+0 [935fb764] Xorg_libXcursor_jll v1.2.4+0 [0aeada51] Xorg_libXdamage_jll v1.1.6+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [d091e8ba] Xorg_libXfixes_jll v6.0.1+0 [a51aa0fd] Xorg_libXi_jll v1.8.3+0 [d1454406] Xorg_libXinerama_jll v1.1.6+0 [ec84b674] Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [b6f176f1] Xorg_libXtst_jll v1.2.5+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [cc61e674] Xorg_libxkbfile_jll v1.1.3+0 [35661453] Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [de012916] at_spi2_atk_jll v2.38.0+0 [0fc3237b] at_spi2_core_jll v2.56.2+0 [da03df04] gdk_pixbuf_jll v2.42.13+0 [bf975903] iso_codes_jll v4.17.0+0 [b53b4c65] libpng_jll v1.6.48+0 [d8fb68d0] xkbcommon_jll v1.8.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.0+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... ✗ CellListMap Info Given Packmol was explicitly requested, output will be shown live  ERROR: LoadError: UndefVarError: `Cell` not defined in `CellListMap` Suggestion: define the const at top-level before running function that uses it (stricter Julia v1.12+ rule). Note: the binding state changed since the error occurred (was: 11, now: 0). Stacktrace:  [1] #s27#1  @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:30 [inlined]  [2] var"#s27#1"(T::Any, ::Any, ::Any)  @ ConstructionBase ./none:0  [3] (::Core.GeneratedFunctionStub)(::UInt64, ::Method, ::Any, ::Vararg{Any})  @ Base ./expr.jl:1703  [4] macro expansion  @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:195 [inlined]  [5] setfields_object(obj::CellListMap.Cell{3, Float64}, patch::@NamedTuple{n_particles::Int64})  @ ConstructionBase ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:195  [6] setproperties_object  @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:208 [inlined]  [7] setproperties  @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:136 [inlined]  [8] set  @ ~/.julia/packages/Setfield/ZezIj/src/lens.jl:122 [inlined]  [9] modify  @ ~/.julia/packages/Setfield/ZezIj/src/lens.jl:106 [inlined]  [10] macro expansion  @ ~/.julia/packages/Setfield/ZezIj/src/sugar.jl:205 [inlined]  [11] add_particle_to_celllist!(ip::Int64, x::StaticArraysCore.SVector{3, Float64}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}, cl::CellListMap.CellList{3, Float64}; real_particle::Bool)  @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:1019  [12] add_particle_to_celllist!  @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:976 [inlined]  [13] add_particles!(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}, ishift::Int64, cl::CellListMap.CellList{3, Float64})  @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:830  [14] UpdateCellList!(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}, cl::CellListMap.CellList{3, Float64}, aux::CellListMap.AuxThreaded{3, Float64}; parallel::Bool, validate_coordinates::typeof(CellListMap._validate_coordinates))  @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:752  [15] UpdateCellList!  @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:729 [inlined]  [16] #UpdateCellList!#58  @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:635 [inlined]  [17] UpdateCellList!  @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:626 [inlined]  [18] CellListMap.CellList(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}; parallel::Bool, nbatches::Tuple{Int64, Int64}, validate_coordinates::typeof(CellListMap._validate_coordinates))  @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:466  [19] CellListMap.CellList(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64})  @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:457  [20] macro expansion  @ ~/.julia/packages/CellListMap/NHSF1/src/precompile.jl:16 [inlined]  [21] macro expansion  @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]  [22] macro expansion  @ ~/.julia/packages/CellListMap/NHSF1/src/precompile.jl:15 [inlined]  [23] macro expansion  @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined]  [24] top-level scope  @ ~/.julia/packages/CellListMap/NHSF1/src/precompile.jl:3  [25] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [26] top-level scope  @ ~/.julia/packages/CellListMap/NHSF1/src/CellListMap.jl:166  [27] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [28] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:3000  [29] top-level scope  @ stdin:5  [30] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [31] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2846  [32] include_string  @ ./loading.jl:2856 [inlined]  [33] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:322  [34] _start()  @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/CellListMap/NHSF1/src/precompile.jl:2 in expression starting at /home/pkgeval/.julia/packages/CellListMap/NHSF1/src/CellListMap.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile CellListMap [69e1c6dd-3888-40e6-b3c8-31ac5f578864] to "/home/pkgeval/.julia/compiled/v1.13/CellListMap/jl_9PHum4" (ProcessExited(1)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3287  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2652  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115  [7] #invokelatest_gr#232  @ ./reflection.jl:1282 [inlined]  [8] invokelatest_gr  @ ./reflection.jl:1274 [inlined]  [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3858  [10] maybe_cachefile_lock  @ ./loading.jl:3855 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2638  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2466  [13] macro expansion  @ ./loading.jl:2394 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2359  [16] require  @ ./loading.jl:2335 [inlined]  [17] eval_import_path  @ ./module.jl:36 [inlined]  [18] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)  @ Base ./module.jl:111  [19] top-level scope  @ ~/.julia/packages/Packmol/b5E9B/src/Packmol.jl:6  [20] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3000  [22] top-level scope  @ stdin:5  [23] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2846  [25] include_string  @ ./loading.jl:2856 [inlined]  [26] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:322  [27] _start()  @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Packmol/b5E9B/src/Packmol.jl:1 in expression starting at stdin:5 ✗ Packmol 0 dependencies successfully precompiled in 40 seconds. 111 already precompiled. ERROR: LoadError: The following 2 direct dependencies failed to precompile: Packmol Failed to precompile Packmol [6cdf86f9-9676-4cea-a42d-19f9a563443f] to "/home/pkgeval/.julia/compiled/v1.13/Packmol/jl_uloFUf" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `Cell` not defined in `CellListMap` Suggestion: define the const at top-level before running function that uses it (stricter Julia v1.12+ rule). Note: the binding state changed since the error occurred (was: 11, now: 0). Stacktrace: [1] #s27#1 @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:30 [inlined] [2] var"#s27#1"(T::Any, ::Any, ::Any) @ ConstructionBase ./none:0 [3] (::Core.GeneratedFunctionStub)(::UInt64, ::Method, ::Any, ::Vararg{Any}) @ Base ./expr.jl:1703 [4] macro expansion @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:195 [inlined] [5] setfields_object(obj::CellListMap.Cell{3, Float64}, patch::@NamedTuple{n_particles::Int64}) @ ConstructionBase ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:195 [6] setproperties_object @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:208 [inlined] [7] setproperties @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:136 [inlined] [8] set @ ~/.julia/packages/Setfield/ZezIj/src/lens.jl:122 [inlined] [9] modify @ ~/.julia/packages/Setfield/ZezIj/src/lens.jl:106 [inlined] [10] macro expansion @ ~/.julia/packages/Setfield/ZezIj/src/sugar.jl:205 [inlined] [11] add_particle_to_celllist!(ip::Int64, x::StaticArraysCore.SVector{3, Float64}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}, cl::CellListMap.CellList{3, Float64}; real_particle::Bool) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:1019 [12] add_particle_to_celllist! @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:976 [inlined] [13] add_particles!(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}, ishift::Int64, cl::CellListMap.CellList{3, Float64}) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:830 [14] UpdateCellList!(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}, cl::CellListMap.CellList{3, Float64}, aux::CellListMap.AuxThreaded{3, Float64}; parallel::Bool, validate_coordinates::typeof(CellListMap._validate_coordinates)) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:752 [15] UpdateCellList! @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:729 [inlined] [16] #UpdateCellList!#58 @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:635 [inlined] [17] UpdateCellList! @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:626 [inlined] [18] CellListMap.CellList(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}; parallel::Bool, nbatches::Tuple{Int64, Int64}, validate_coordinates::typeof(CellListMap._validate_coordinates)) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:466 [19] CellListMap.CellList(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:457 [20] macro expansion @ ~/.julia/packages/CellListMap/NHSF1/src/precompile.jl:16 [inlined] [21] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [22] macro expansion @ ~/.julia/packages/CellListMap/NHSF1/src/precompile.jl:15 [inlined] [23] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [24] top-level scope @ ~/.julia/packages/CellListMap/NHSF1/src/precompile.jl:3 [25] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [26] top-level scope @ ~/.julia/packages/CellListMap/NHSF1/src/CellListMap.jl:166 [27] include(mod::Module, _path::String) @ Base ./Base.jl:309 [28] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [29] top-level scope @ stdin:5 [30] eval(m::Module, e::Any) @ Core ./boot.jl:489 [31] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [32] include_string @ ./loading.jl:2856 [inlined] [33] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [34] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/CellListMap/NHSF1/src/precompile.jl:2 in expression starting at /home/pkgeval/.julia/packages/CellListMap/NHSF1/src/CellListMap.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile CellListMap [69e1c6dd-3888-40e6-b3c8-31ac5f578864] to "/home/pkgeval/.julia/compiled/v1.13/CellListMap/jl_9PHum4" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#232 @ ./reflection.jl:1282 [inlined] [8] invokelatest_gr @ ./reflection.jl:1274 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [10] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [13] macro expansion @ ./loading.jl:2394 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [16] require @ ./loading.jl:2335 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) @ Base ./module.jl:111 [19] top-level scope @ ~/.julia/packages/Packmol/b5E9B/src/Packmol.jl:6 [20] include(mod::Module, _path::String) @ Base ./Base.jl:309 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [22] top-level scope @ stdin:5 [23] eval(m::Module, e::Any) @ Core ./boot.jl:489 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [25] include_string @ ./loading.jl:2856 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [27] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Packmol/b5E9B/src/Packmol.jl:1 in expression starting at stdin:5 CellListMap Failed to precompile CellListMap [69e1c6dd-3888-40e6-b3c8-31ac5f578864] to "/home/pkgeval/.julia/compiled/v1.13/CellListMap/jl_ydUecu" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `Cell` not defined in `CellListMap` Suggestion: define the const at top-level before running function that uses it (stricter Julia v1.12+ rule). Note: the binding state changed since the error occurred (was: 11, now: 0). Stacktrace: [1] #s27#1 @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:30 [inlined] [2] var"#s27#1"(T::Any, ::Any, ::Any) @ ConstructionBase ./none:0 [3] (::Core.GeneratedFunctionStub)(::UInt64, ::Method, ::Any, ::Vararg{Any}) @ Base ./expr.jl:1703 [4] macro expansion @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:195 [inlined] [5] setfields_object(obj::CellListMap.Cell{3, Float64}, patch::@NamedTuple{n_particles::Int64}) @ ConstructionBase ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:195 [6] setproperties_object @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:208 [inlined] [7] setproperties @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:136 [inlined] [8] set @ ~/.julia/packages/Setfield/ZezIj/src/lens.jl:122 [inlined] [9] modify @ ~/.julia/packages/Setfield/ZezIj/src/lens.jl:106 [inlined] [10] macro expansion @ ~/.julia/packages/Setfield/ZezIj/src/sugar.jl:205 [inlined] [11] add_particle_to_celllist!(ip::Int64, x::StaticArraysCore.SVector{3, Float64}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}, cl::CellListMap.CellList{3, Float64}; real_particle::Bool) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:1019 [12] add_particle_to_celllist! @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:976 [inlined] [13] add_particles!(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}, ishift::Int64, cl::CellListMap.CellList{3, Float64}) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:830 [14] UpdateCellList!(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}, cl::CellListMap.CellList{3, Float64}, aux::CellListMap.AuxThreaded{3, Float64}; parallel::Bool, validate_coordinates::typeof(CellListMap._validate_coordinates)) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:752 [15] UpdateCellList! @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:729 [inlined] [16] #UpdateCellList!#58 @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:635 [inlined] [17] UpdateCellList! @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:626 [inlined] [18] CellListMap.CellList(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}; parallel::Bool, nbatches::Tuple{Int64, Int64}, validate_coordinates::typeof(CellListMap._validate_coordinates)) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:466 [19] CellListMap.CellList(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:457 [20] macro expansion @ ~/.julia/packages/CellListMap/NHSF1/src/precompile.jl:16 [inlined] [21] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [22] macro expansion @ ~/.julia/packages/CellListMap/NHSF1/src/precompile.jl:15 [inlined] [23] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [24] top-level scope @ ~/.julia/packages/CellListMap/NHSF1/src/precompile.jl:3 [25] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [26] top-level scope @ ~/.julia/packages/CellListMap/NHSF1/src/CellListMap.jl:166 [27] include(mod::Module, _path::String) @ Base ./Base.jl:309 [28] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [29] top-level scope @ stdin:5 [30] eval(m::Module, e::Any) @ Core ./boot.jl:489 [31] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [32] include_string @ ./loading.jl:2856 [inlined] [33] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [34] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/CellListMap/NHSF1/src/precompile.jl:2 in expression starting at /home/pkgeval/.julia/packages/CellListMap/NHSF1/src/CellListMap.jl:1 in expression starting at stdin:5 in expression starting at /home/pkgeval/.julia/packages/Packmol/b5E9B/test/runtests.jl:2 Testing failed after 99.09s ERROR: LoadError: Package Packmol errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2421 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2276 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:498 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:309 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:324 [12] _start() @ Base ./client.jl:557 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 416.25s: package fails to precompile