Package evaluation of Molly on Julia 1.13.0-DEV.717 (51214a7524*) started at 2025-06-08T22:18:25.217 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.22s ################################################################################ # Installation # Installing Molly... Resolving package versions... Installed Rmath_jll ─────────────── v0.5.1+0 Installed LLVMExtra_jll ─────────── v0.0.36+0 Installed MacroTools ────────────── v0.5.16 Installed FillArrays ────────────── v1.13.0 Installed DataStructures ────────── v0.18.22 Installed Adapt ─────────────────── v4.3.0 Installed ConstructionBase ──────── v1.5.8 Installed HypergeometricFunctions ─ v0.3.28 Installed AtomsBase ─────────────── v0.5.1 Installed BioStructures ─────────── v4.5.0 Installed AliasTables ───────────── v1.1.3 Installed ArnoldiMethod ─────────── v0.4.0 Installed ChunkSplitters ────────── v3.1.2 Installed StatsBase ─────────────── v0.34.5 Installed NearestNeighbors ──────── v0.4.21 Installed CellListMap ───────────── v0.9.10 Installed CodecZlib ─────────────── v0.7.8 Installed OrderedCollections ────── v1.8.1 Installed HashArrayMappedTries ──── v0.2.0 Installed PeriodicTable ─────────── v1.2.1 Installed Compat ────────────────── v4.16.0 Installed Combinatorics ─────────── v1.0.3 Installed TranscodingStreams ────── v0.11.3 Installed RecipesBase ───────────── v1.3.4 Installed DataAPI ───────────────── v1.16.0 Installed StatsAPI ──────────────── v1.7.1 Installed Statistics ────────────── v1.11.1 Installed Atomix ────────────────── v1.1.1 Installed PrecompileTools ───────── v1.3.2 Installed GPUArrays ─────────────── v11.2.2 Installed CEnum ─────────────────── v0.5.0 Installed ProgressMeter ─────────── v1.10.4 Installed StaticArraysCore ──────── v1.4.3 Installed IrrationalConstants ───── v0.2.4 Installed StaticArrays ──────────── v1.9.13 Installed Distances ─────────────── v0.10.12 Installed BioSymbols ────────────── v5.2.0 Installed GPUArraysCore ─────────── v0.2.0 Installed QuadGK ────────────────── v2.11.2 Installed Requires ──────────────── v1.3.1 Installed SimpleTraits ──────────── v0.9.4 Installed UnitfulAtomic ─────────── v1.0.0 Installed OpenSpecFun_jll ───────── v0.5.6+0 Installed LogExpFunctions ───────── v0.3.29 Installed UnsafeAtomicsLLVM ─────── v0.2.2 Installed LLVM ──────────────────── v9.4.0 Installed Chemfiles ─────────────── v0.10.42 Installed Distributions ─────────── v0.25.120 Installed Rmath ─────────────────── v0.8.0 Installed ScopedValues ──────────── v1.3.0 Installed KernelAbstractions ────── v0.9.34 Installed UnsafeAtomics ─────────── v0.2.1 Installed StatsFuns ─────────────── v1.5.0 Installed Unitful ───────────────── v1.22.1 Installed PtrArrays ─────────────── v1.3.0 Installed Parameters ────────────── v0.12.3 Installed AtomsCalculators ──────── v0.2.3 Installed XML2_jll ──────────────── v2.13.6+1 Installed SpecialFunctions ──────── v2.5.1 Installed Setfield ──────────────── v1.1.2 Installed Reexport ──────────────── v1.2.2 Installed Missings ──────────────── v1.2.0 Installed Preferences ───────────── v1.4.3 Installed BioGenerics ───────────── v0.1.5 Installed TestItems ─────────────── v1.0.0 Installed JLLWrappers ───────────── v1.7.0 Installed Libiconv_jll ──────────── v1.18.0+0 Installed PDMats ────────────────── v0.11.35 Installed SortingAlgorithms ─────── v1.2.1 Installed Format ────────────────── v1.3.7 Installed EzXML ─────────────────── v1.2.1 Installed UnPack ────────────────── v1.0.2 Installed SimpleCrystals ────────── v0.4.0 Installed DocStringExtensions ───── v0.9.5 Installed Graphs ────────────────── v1.13.0 Installed Chemfiles_jll ─────────── v0.10.4+0 Installed Inflate ───────────────── v0.1.5 Installed Molly ─────────────────── v0.22.1 Installing 6 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 121.9 KiB Installed artifact Libiconv 1.9 MiB Installed artifact Chemfiles 1.6 MiB Installed artifact XML2 2.5 MiB Installed artifact LLVMExtra 3.2 MiB Updating `~/.julia/environments/v1.13/Project.toml` [aa0f7f06] + Molly v0.22.1 Updating `~/.julia/environments/v1.13/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [a9b6321e] + Atomix v1.1.1 [a963bdd2] + AtomsBase v0.5.1 [a3e0e189] + AtomsCalculators v0.2.3 [47718e42] + BioGenerics v0.1.5 [de9282ab] + BioStructures v4.5.0 [3c28c6f8] + BioSymbols v5.2.0 [fa961155] + CEnum v0.5.0 [69e1c6dd] + CellListMap v0.9.10 [46823bd8] + Chemfiles v0.10.42 [ae650224] + ChunkSplitters v3.1.2 [944b1d66] + CodecZlib v0.7.8 [861a8166] + Combinatorics v1.0.3 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [8f5d6c58] + EzXML v1.2.1 [1a297f60] + FillArrays v1.13.0 [1fa38f19] + Format v1.3.7 [0c68f7d7] + GPUArrays v11.2.2 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.13.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [63c18a36] + KernelAbstractions v0.9.34 [929cbde3] + LLVM v9.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [aa0f7f06] + Molly v0.22.1 [b8a86587] + NearestNeighbors v0.4.21 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [7b2266bf] + PeriodicTable v1.2.1 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [7e506255] + ScopedValues v1.3.0 [efcf1570] + Setfield v1.1.2 [64031d72] + SimpleCrystals v0.4.0 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [1c621080] + TestItems v1.0.0 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.22.1 [a7773ee8] + UnitfulAtomic v1.0.0 ⌅ [013be700] + UnsafeAtomics v0.2.1 [d80eeb9a] + UnsafeAtomicsLLVM v0.2.2 [78a364fa] + Chemfiles_jll v0.10.4+0 [dad2f222] + LLVMExtra_jll v0.0.36+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.6+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 12.0s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4897.0 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 25 already precompiled. ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.11/activate_set.jl:75 ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ Unsatisfiable requirements detected for package LLD_jll [d55e3150]: │ LLD_jll [d55e3150] log: │ ├─possible versions are: 20.1.2 or uninstalled │ └─found to have no compatible versions left with AMDGPU [21141c5a] │ └─AMDGPU [21141c5a] log: │ ├─possible versions are: 0.1.0 - 1.3.3 or uninstalled │ └─restricted to versions 1 by project [e5c65eba], leaving only versions: 1.0.0 - 1.3.3 │ └─project [e5c65eba] log: │ ├─possible versions are: 0.0.0 or uninstalled │ └─project [e5c65eba] is fixed to version 0.0.0 │ Stacktrace: │ [1] propagate_constraints!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; log_events::Bool, err_msg_preamble::String) │ @ Pkg.Resolve /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Resolve/graphtype.jl:1121 │ [2] propagate_constraints! (repeats 2 times) │ @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Resolve/graphtype.jl:1056 [inlined] │ [3] simplify_graph!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; validate_versions::Bool) │ @ Pkg.Resolve /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Resolve/graphtype.jl:1622 │ [4] simplify_graph! (repeats 2 times) │ @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Resolve/graphtype.jl:1621 [inlined] │ [5] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{PackageSpec}, julia_version::VersionNumber, installed_only::Bool) │ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:527 │ [6] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, level::UpgradeLevel; skip_writing_project::Bool, preserve::Nothing) │ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:1894 │ [7] up │ @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:1873 [inlined] │ [8] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; level::UpgradeLevel, mode::PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, kwargs::@Kwargs{io::Base.DevNull}) │ @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:404 │ [9] up │ @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:378 [inlined] │ [10] up │ @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:169 [inlined] │ [11] #resolve#167 │ @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:410 [inlined] │ [12] resolve │ @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:409 [inlined] │ [13] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.11/activate_set.jl:80 │ [14] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.11/activate_set.jl:9 │ [15] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [16] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [17] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:324 │ [18] _start() │ @ Base ./client.jl:557 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 2841.5 ms ✓ UnsafeAtomics 843.8 ms ✓ HashArrayMappedTries 3979.5 ms ✓ MacroTools 1174.3 ms ✓ TranscodingStreams 750.1 ms ✓ PtrArrays 1265.6 ms ✓ OrderedCollections 969.4 ms ✓ Inflate 716.8 ms ✓ TestItems 1020.9 ms ✓ ConstructionBase 847.3 ms ✓ ChunkSplitters 805.3 ms ✓ CEnum 1041.4 ms ✓ Statistics 922.1 ms ✓ StaticArraysCore 711.6 ms ✓ Reexport 1070.1 ms ✓ DocStringExtensions 1895.6 ms ✓ FillArrays 802.1 ms ✓ DataAPI 2059.0 ms ✓ IrrationalConstants 759.0 ms ✓ UnPack 1150.9 ms ✓ SuiteSparse 2287.1 ms ✓ Format 793.6 ms ✓ StatsAPI 2018.7 ms ✓ Combinatorics 1073.4 ms ✓ Requires 1724.1 ms ✓ ProgressMeter 33180.3 ms ✓ Unitful 1154.2 ms ✓ Preferences 1093.2 ms ✓ Compat 921.2 ms ✓ Atomix 818.4 ms ✓ ScopedValues 3519.7 ms ✓ SimpleTraits 941.4 ms ✓ CodecZlib 909.2 ms ✓ BioGenerics 967.9 ms ✓ AliasTables 778.8 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1242.3 ms ✓ Statistics → SparseArraysExt 1346.2 ms ✓ FillArrays → FillArraysSparseArraysExt 872.2 ms ✓ FillArrays → FillArraysStatisticsExt 905.0 ms ✓ Missings 1287.2 ms ✓ LogExpFunctions 900.1 ms ✓ Parameters 1654.6 ms ✓ PDMats 1365.8 ms ✓ Distances 870.9 ms ✓ Adapt 2144.1 ms ✓ Unitful → ConstructionBaseUnitfulExt 8168.5 ms ✓ UnitfulAtomic 5881.9 ms ✓ PeriodicTable 1141.5 ms ✓ JLLWrappers 935.8 ms ✓ PrecompileTools 814.4 ms ✓ Compat → CompatLinearAlgebraExt 3021.2 ms ✓ Setfield 1363.9 ms ✓ FillArrays → FillArraysPDMatsExt 1241.7 ms ✓ Distances → DistancesSparseArraysExt 1069.0 ms ✓ GPUArraysCore 1187.2 ms ✓ Adapt → AdaptSparseArraysExt 1291.6 ms ✓ Chemfiles_jll 1343.8 ms ✓ OpenSpecFun_jll 1350.9 ms ✓ Rmath_jll 5064.2 ms ✓ LLVMExtra_jll 1318.4 ms ✓ Libiconv_jll 2465.8 ms ✓ BioSymbols 12865.0 ms ✓ StaticArrays 2678.2 ms ✓ RecipesBase 4218.2 ms ✓ DataStructures 4982.0 ms ✓ SpecialFunctions 1534.5 ms ✓ Rmath 20140.3 ms ✓ LLVM 1339.9 ms ✓ XML2_jll 3776.1 ms ✓ ArnoldiMethod 1561.4 ms ✓ StaticArrays → StaticArraysStatisticsExt 1469.8 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1460.0 ms ✓ Adapt → AdaptStaticArraysExt 5799.7 ms ✓ AtomsBase 12910.9 ms ✓ BioStructures 3154.4 ms ✓ QuadGK 1949.9 ms ✓ SortingAlgorithms 2165.7 ms ✓ HypergeometricFunctions 8937.3 ms ✓ UnsafeAtomicsLLVM 1878.5 ms ✓ EzXML 3781.5 ms ✓ NearestNeighbors 9443.5 ms ✓ Graphs ✗ CellListMap 7996.4 ms ✓ KernelAbstractions 6267.0 ms ✓ Chemfiles 6299.2 ms ✓ AtomsCalculators 4782.9 ms ✓ SimpleCrystals 5123.7 ms ✓ StatsBase 2823.3 ms ✓ StatsFuns 3175.8 ms ✓ KernelAbstractions → SparseArraysExt 2347.6 ms ✓ KernelAbstractions → LinearAlgebraExt 10171.2 ms ✓ Distributions 15572.0 ms ✓ GPUArrays 3897.4 ms ✓ Distributions → DistributionsTestExt ✗ Molly 92 dependencies successfully precompiled in 344 seconds. 36 already precompiled. ERROR: LoadError: The following 1 direct dependency failed to precompile: Molly Failed to precompile Molly [aa0f7f06-fcc0-5ec4-a7f3-a573f33f9c4c] to "/home/pkgeval/.julia/compiled/v1.13/Molly/jl_miilqO" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `Cell` not defined in `CellListMap` Suggestion: define the const at top-level before running function that uses it (stricter Julia v1.12+ rule). Note: the binding state changed since the error occurred (was: 11, now: 0). Stacktrace: [1] #s27#1 @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:30 [inlined] [2] var"#s27#1"(T::Any, ::Any, ::Any) @ ConstructionBase ./none:0 [3] (::Core.GeneratedFunctionStub)(::UInt64, ::Method, ::Any, ::Vararg{Any}) @ Base ./expr.jl:1703 [4] macro expansion @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:195 [inlined] [5] setfields_object(obj::CellListMap.Cell{3, Float64}, patch::@NamedTuple{n_particles::Int64}) @ ConstructionBase ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:195 [6] setproperties_object @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:208 [inlined] [7] setproperties @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:136 [inlined] [8] set @ ~/.julia/packages/Setfield/ZezIj/src/lens.jl:122 [inlined] [9] modify @ ~/.julia/packages/Setfield/ZezIj/src/lens.jl:106 [inlined] [10] macro expansion @ ~/.julia/packages/Setfield/ZezIj/src/sugar.jl:205 [inlined] [11] add_particle_to_celllist!(ip::Int64, x::StaticArraysCore.SVector{3, Float64}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}, cl::CellListMap.CellList{3, Float64}; real_particle::Bool) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:1019 [12] add_particle_to_celllist! @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:976 [inlined] [13] add_particles!(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}, ishift::Int64, cl::CellListMap.CellList{3, Float64}) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:830 [14] UpdateCellList!(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}, cl::CellListMap.CellList{3, Float64}, aux::CellListMap.AuxThreaded{3, Float64}; parallel::Bool, validate_coordinates::typeof(CellListMap._validate_coordinates)) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:752 [15] UpdateCellList! @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:729 [inlined] [16] #UpdateCellList!#58 @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:635 [inlined] [17] UpdateCellList! @ ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:626 [inlined] [18] CellListMap.CellList(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}; parallel::Bool, nbatches::Tuple{Int64, Int64}, validate_coordinates::typeof(CellListMap._validate_coordinates)) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:466 [19] CellListMap.CellList(x::Vector{StaticArraysCore.SVector{3, Float64}}, box::CellListMap.Box{CellListMap.OrthorhombicCell, 3, Float64, Float64, 9, Float64}) @ CellListMap ~/.julia/packages/CellListMap/NHSF1/src/CellLists.jl:457 [20] macro expansion @ ~/.julia/packages/CellListMap/NHSF1/src/precompile.jl:16 [inlined] [21] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [22] macro expansion @ ~/.julia/packages/CellListMap/NHSF1/src/precompile.jl:15 [inlined] [23] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [24] top-level scope @ ~/.julia/packages/CellListMap/NHSF1/src/precompile.jl:3 [25] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [26] top-level scope @ ~/.julia/packages/CellListMap/NHSF1/src/CellListMap.jl:166 [27] include(mod::Module, _path::String) @ Base ./Base.jl:309 [28] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [29] top-level scope @ stdin:5 [30] eval(m::Module, e::Any) @ Core ./boot.jl:489 [31] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [32] include_string @ ./loading.jl:2856 [inlined] [33] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [34] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/CellListMap/NHSF1/src/precompile.jl:2 in expression starting at /home/pkgeval/.julia/packages/CellListMap/NHSF1/src/CellListMap.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile CellListMap [69e1c6dd-3888-40e6-b3c8-31ac5f578864] to "/home/pkgeval/.julia/compiled/v1.13/CellListMap/jl_hGZXmc" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#232 @ ./reflection.jl:1282 [inlined] [8] invokelatest_gr @ ./reflection.jl:1274 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [10] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [13] macro expansion @ ./loading.jl:2394 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [16] require @ ./loading.jl:2335 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/Molly/86RTP/src/Molly.jl:11 [21] include(mod::Module, _path::String) @ Base ./Base.jl:309 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [26] include_string @ ./loading.jl:2856 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [28] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/Molly/86RTP/src/Molly.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 367.79s ################################################################################ # Testing # Testing Molly Test Could not use exact versions of packages in manifest. Re-resolving dependencies Testing failed after 6.68s ERROR: LoadError: Unsatisfiable requirements detected for package LLD_jll [d55e3150]: LLD_jll [d55e3150] log: ├─possible versions are: 20.1.2 or uninstalled └─found to have no compatible versions left with AMDGPU [21141c5a] └─AMDGPU [21141c5a] log: ├─possible versions are: 0.1.0 - 1.3.3 or uninstalled └─restricted to versions 1 by project [1d802de1], leaving only versions: 1.0.0 - 1.3.3 └─project [1d802de1] log: ├─possible versions are: 0.0.0 or uninstalled └─project [1d802de1] is fixed to version 0.0.0 Stacktrace: [1] propagate_constraints!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; log_events::Bool, err_msg_preamble::String) @ Pkg.Resolve /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Resolve/graphtype.jl:1121 [2] propagate_constraints! (repeats 2 times) @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Resolve/graphtype.jl:1056 [inlined] [3] simplify_graph!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; validate_versions::Bool) @ Pkg.Resolve /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Resolve/graphtype.jl:1622 [4] simplify_graph! (repeats 2 times) @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Resolve/graphtype.jl:1621 [inlined] [5] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{PackageSpec}, julia_version::VersionNumber, installed_only::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:527 [6] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, level::UpgradeLevel; skip_writing_project::Bool, preserve::Nothing) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:1894 [7] up @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:1873 [inlined] [8] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; level::UpgradeLevel, mode::PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:404 [9] up @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:378 [inlined] [10] #up#49 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:169 [inlined] [11] (::Pkg.Operations.var"#197#198"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#212#213"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2190 [12] with_temp_env(fn::Pkg.Operations.var"#197#198"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#212#213"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec}, temp_env::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2058 [13] (::Pkg.Operations.var"#193#194"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#212#213"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, String})(tmp::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2167 [14] mktempdir(fn::Pkg.Operations.var"#193#194"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#212#213"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, String}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:899 [15] mktempdir(fn::Function, parent::String) @ Base.Filesystem ./file.jl:895 [16] #sandbox#189 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2114 [inlined] [17] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2364 [18] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2276 [inlined] [19] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:498 [20] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [21] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [22] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [23] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [24] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [25] include(mod::Module, _path::String) @ Base ./Base.jl:309 [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:324 [27] _start() @ Base ./client.jl:557 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 caused by: Unsatisfiable requirements detected for package LLD_jll [d55e3150]: LLD_jll [d55e3150] log: ├─possible versions are: 20.1.2 or uninstalled └─found to have no compatible versions left with AMDGPU [21141c5a] └─AMDGPU [21141c5a] log: ├─possible versions are: 0.1.0 - 1.3.3 or uninstalled ├─restricted to versions 1 by project [1d802de1], leaving only versions: 1.0.0 - 1.3.3 │ └─project [1d802de1] log: │ ├─possible versions are: 0.0.0 or uninstalled │ └─project [1d802de1] is fixed to version 0.0.0 ├─restricted by compatibility requirements with UnsafeAtomics [013be700] to versions: 0.1.0 - 1.1.7 or uninstalled, leaving only versions: 1.0.0 - 1.1.7 │ └─UnsafeAtomics [013be700] log: │ ├─possible versions are: 0.1.0 - 0.3.0 or uninstalled │ └─restricted to versions 0.2.1 by an explicit requirement, leaving only versions: 0.2.1 └─restricted by compatibility requirements with GPUArrays [0c68f7d7] to versions: 1.1.0 - 1.3.3 or uninstalled, leaving only versions: 1.1.0 - 1.1.7 └─GPUArrays [0c68f7d7] log: ├─possible versions are: 0.3.0 - 11.2.2 or uninstalled ├─restricted to versions * by project [1d802de1], leaving only versions: 0.3.0 - 11.2.2 │ └─project [1d802de1] log: see above └─restricted to versions 11.2.2 by an explicit requirement, leaving only versions: 11.2.2 Stacktrace: [1] propagate_constraints!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; log_events::Bool, err_msg_preamble::String) @ Pkg.Resolve /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Resolve/graphtype.jl:1121 [2] propagate_constraints! (repeats 2 times) @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Resolve/graphtype.jl:1056 [inlined] [3] simplify_graph!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; validate_versions::Bool) @ Pkg.Resolve /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Resolve/graphtype.jl:1622 [4] simplify_graph! (repeats 2 times) @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Resolve/graphtype.jl:1621 [inlined] [5] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{PackageSpec}, julia_version::VersionNumber, installed_only::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:527 [6] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, level::UpgradeLevel; skip_writing_project::Bool, preserve::Nothing) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:1894 [7] up @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:1873 [inlined] [8] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; level::UpgradeLevel, mode::PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, kwargs::@Kwargs{io::Base.DevNull}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:404 [9] up @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:378 [inlined] [10] up @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:169 [inlined] [11] #resolve#167 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:410 [inlined] [12] resolve @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:409 [inlined] [13] (::Pkg.Operations.var"#197#198"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#212#213"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2183 [14] with_temp_env(fn::Pkg.Operations.var"#197#198"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#212#213"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec}, temp_env::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2058 [15] (::Pkg.Operations.var"#193#194"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#212#213"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, String})(tmp::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2167 [16] mktempdir(fn::Pkg.Operations.var"#193#194"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#212#213"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, String}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:899 [17] mktempdir(fn::Function, parent::String) @ Base.Filesystem ./file.jl:895 [18] #sandbox#189 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2114 [inlined] [19] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2364 [20] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2276 [inlined] [21] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:498 [22] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [23] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [24] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [25] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [26] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [27] include(mod::Module, _path::String) @ Base ./Base.jl:309 [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:324 [29] _start() @ Base ./client.jl:557 PkgEval failed after 414.57s: package fails to precompile