Package evaluation of ExtendableFEM on Julia 1.13.0-DEV.717 (51214a7524*) started at 2025-06-09T02:21:46.762 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.78s ################################################################################ # Installation # Installing ExtendableFEM... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [a722555e] + ExtendableFEM v1.2.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.19.0 [4c555306] + ArrayLayouts v1.11.1 [13072b0f] + AxisAlgorithms v1.1.0 ⌅ [e2ed5e7c] + Bijections v0.1.10 [d360d2e6] + ChainRulesCore v1.25.1 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.29.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.5.8 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [5b8099bc] + DomainSets v0.7.15 [7c1d4256] + DynamicPolynomials v0.6.2 [fdbdab4c] + ElasticArrays v1.2.12 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [a722555e] + ExtendableFEM v1.2.0 [12fb9182] + ExtendableFEMBase v1.1.0 [cfc395e8] + ExtendableGrids v1.13.1 [95c220a8] + ExtendableSparse v1.7.1 [411431e0] + Extents v0.1.6 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.0.1 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.4.1 [5c1252a2] + GeometryBasics v0.5.9 [86223c79] + Graphs v1.13.0 [5eed8a63] + GridVisualize v1.12.0 [5573ae12] + GridVisualizeTools v3.0.2 [34004b35] + HypergeometricFunctions v0.3.28 [ac1192a8] + HypertextLiteral v0.9.5 [88f59080] + ILUZero v0.2.0 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.2 ⌅ [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [ae98c720] + Jieko v0.2.1 [ba0b0d4f] + Krylov v0.10.1 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.8 [5078a376] + LazyArrays v2.6.1 [9c8b4983] + LightXML v0.9.1 [7ed4a6bd] + LinearSolve v3.17.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [299715c1] + MarchingCubes v0.1.11 [c03570c3] + Memoize v0.4.4 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.5 [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.4 [77ba4419] + NaNMath v1.1.3 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [65ce6f38] + PackageExtensionCompat v1.0.2 [f27b6e38] + Polynomials v4.0.19 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.33.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [0bca4576] + SciMLBase v2.97.0 ⌅ [c0aeaf25] + SciMLOperators v0.4.0 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [47a9eef4] + SparseDiffTools v2.26.0 [e56a9233] + Sparspak v0.3.11 [276daf66] + SpecialFunctions v2.5.1 [a25cea48] + SpecialPolynomials v0.5.0 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [892a3eda] + StringManipulation v0.4.1 [2efcf032] + SymbolicIndexingInterface v0.3.40 [19f23fe9] + SymbolicLimits v0.2.2 [d1185830] + SymbolicUtils v3.29.0 [0c5d862f] + Symbolics v6.40.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [ed4db957] + TaskLocalValues v0.1.2 [62fd8b95] + TensorCore v0.1.1 [8ea1fca8] + TermInterface v2.0.0 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [410a4b4d] + Tricks v0.1.10 [3a884ed6] + UnPack v1.0.2 [b8865327] + UnicodePlots v3.7.2 [a7c27f48] + Unityper v0.1.6 [4004b06d] + VTKBase v1.0.1 [19fa3120] + VertexSafeGraphs v0.2.0 [897b6980] + WeakValueDicts v0.1.0 [efce3f68] + WoodburyMatrices v1.0.0 [64499a7a] + WriteVTK v1.21.2 [5ae413db] + EarCut_jll v2.2.4+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.0.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.6+1 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.13s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: OrdinaryDiffEqSDIRK Failed to precompile OrdinaryDiffEqSDIRK [2d112036-d095-4a1e-ab9a-08536f3ecdbf] to "/home/pkgeval/.julia/compiled/v1.13/OrdinaryDiffEqSDIRK/jl_2wO9ew" (ProcessExited(1)). ERROR: LoadError: TaskFailedException nested task error: UndefVarError: `SimpleNewtonRaphson` not defined in `SimpleNonlinearSolve` Suggestion: define the const at top-level before running function that uses it (stricter Julia v1.12+ rule). Note: the binding state changed since the error occurred (was: 11, now: 0). Stacktrace: [1] #s27#1 @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:30 [inlined] [2] var"#s27#1"(T::Any, ::Any, ::Any) @ ConstructionBase ./none:0 [3] (::Core.GeneratedFunctionStub)(::UInt64, ::Method, ::Any, ::Vararg{Any}) @ Base ./expr.jl:1703 [4] macro expansion @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:195 [inlined] [5] setfields_object(obj::SimpleNonlinearSolve.SimpleNewtonRaphson{ADTypes.AutoForwardDiff{1, Nothing}}, patch::@NamedTuple{autodiff::ADTypes.AutoForwardDiff{1, Nothing}}) @ ConstructionBase ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:195 [6] setproperties_object @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:208 [inlined] [7] setproperties @ ~/.julia/packages/ConstructionBase/lUKuV/src/ConstructionBase.jl:136 [inlined] [8] set @ ~/.julia/packages/Setfield/ZezIj/src/lens.jl:122 [inlined] [9] macro expansion @ ~/.julia/packages/Setfield/ZezIj/src/sugar.jl:198 [inlined] [10] configure_autodiff @ ~/.julia/packages/SimpleNonlinearSolve/COlU9/src/raphson.jl:30 [inlined] [11] solve(::SciMLBase.ImmutableNonlinearProblem{Float64, false, Float64, SciMLBase.NonlinearFunction{false, SciMLBase.FullSpecialize, SimpleNonlinearSolve.var"#48#49", LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing}, @Kwargs{}, SciMLBase.StandardNonlinearProblem}, ::SimpleNonlinearSolve.SimpleNewtonRaphson{ADTypes.AutoForwardDiff{1, Nothing}}; sensealg::Nothing, u0::Nothing, p::Nothing, kwargs::@Kwargs{abstol::Float64, verbose::Bool}) @ SimpleNonlinearSolve ~/.julia/packages/SimpleNonlinearSolve/COlU9/src/SimpleNonlinearSolve.jl:97 [12] solve @ ~/.julia/packages/SimpleNonlinearSolve/COlU9/src/SimpleNonlinearSolve.jl:92 [inlined] [13] #solve#38 @ ~/.julia/packages/SimpleNonlinearSolve/COlU9/src/SimpleNonlinearSolve.jl:64 [inlined] [14] solve @ ~/.julia/packages/SimpleNonlinearSolve/COlU9/src/SimpleNonlinearSolve.jl:59 [inlined] [15] (::SimpleNonlinearSolve.var"#54#55"{SimpleNonlinearSolve.SimpleNewtonRaphson{ADTypes.AutoForwardDiff{1, Nothing}}, SciMLBase.NonlinearProblem{Float64, false, Float64, SciMLBase.NonlinearFunction{false, SciMLBase.FullSpecialize, SimpleNonlinearSolve.var"#48#49", LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED_NO_TIME), Nothing, Nothing, Nothing, Nothing}, @Kwargs{}, SciMLBase.StandardNonlinearProblem}})() @ SimpleNonlinearSolve ~/.julia/packages/SimpleNonlinearSolve/COlU9/src/SimpleNonlinearSolve.jl:156 ...and 2 more exceptions. Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:601 [2] macro expansion @ ./task.jl:634 [inlined] [3] macro expansion @ ~/.julia/packages/SimpleNonlinearSolve/COlU9/src/SimpleNonlinearSolve.jl:155 [inlined] [4] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [5] macro expansion @ ~/.julia/packages/SimpleNonlinearSolve/COlU9/src/SimpleNonlinearSolve.jl:154 [inlined] [6] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [7] top-level scope @ ~/.julia/packages/SimpleNonlinearSolve/COlU9/src/SimpleNonlinearSolve.jl:118 [8] include(mod::Module, _path::String) @ Base ./Base.jl:309 [9] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [10] top-level scope @ stdin:5 [11] eval(m::Module, e::Any) @ Core ./boot.jl:489 [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [13] include_string @ ./loading.jl:2856 [inlined] [14] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [15] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/SimpleNonlinearSolve/COlU9/src/SimpleNonlinearSolve.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile SimpleNonlinearSolve [727e6d20-b764-4bd8-a329-72de5adea6c7] to "/home/pkgeval/.julia/compiled/v1.13/SimpleNonlinearSolve/jl_LMpm1M" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#232 @ ./reflection.jl:1282 [inlined] [8] invokelatest_gr @ ./reflection.jl:1274 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [10] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [13] macro expansion @ ./loading.jl:2394 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [16] require @ ./loading.jl:2335 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [20] top-level scope @ ~/.julia/packages/OrdinaryDiffEqNonlinearSolve/TfqrM/src/OrdinaryDiffEqNonlinearSolve.jl:13 [21] include(mod::Module, _path::String) @ Base ./Base.jl:309 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [26] include_string @ ./loading.jl:2856 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [28] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/OrdinaryDiffEqNonlinearSolve/TfqrM/src/OrdinaryDiffEqNonlinearSolve.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile OrdinaryDiffEqNonlinearSolve [127b3ac7-2247-4354-8eb6-78cf4e7c58e8] to "/home/pkgeval/.julia/compiled/v1.13/OrdinaryDiffEqNonlinearSolve/jl_l5AYgs" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] #invokelatest_gr#232 @ ./reflection.jl:1282 [inlined] [8] invokelatest_gr @ ./reflection.jl:1274 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [10] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [13] macro expansion @ ./loading.jl:2394 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [16] require @ ./loading.jl:2335 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [20] top-level scope @ ~/.julia/packages/OrdinaryDiffEqSDIRK/YAA9M/src/OrdinaryDiffEqSDIRK.jl:24 [21] include(mod::Module, _path::String) @ Base ./Base.jl:309 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [26] include_string @ ./loading.jl:2856 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [28] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/OrdinaryDiffEqSDIRK/YAA9M/src/OrdinaryDiffEqSDIRK.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 2477.25s ################################################################################ # Testing # Testing ExtendableFEM Status `/tmp/jl_zUnbhQ/Project.toml` [4c88cf16] Aqua v0.8.13 [38540f10] CommonSolve v0.2.4 [163ba53b] DiffResults v1.1.0 [ffbed154] DocStringExtensions v0.9.5 [3bbe58f8] ExampleJuggler v2.2.1 [7d51a73a] ExplicitImports v1.11.2 [a722555e] ExtendableFEM v1.2.0 [12fb9182] ExtendableFEMBase v1.1.0 [cfc395e8] ExtendableGrids v1.13.1 [95c220a8] ExtendableSparse v1.7.1 [f6369f11] ForwardDiff v1.0.1 [5eed8a63] GridVisualize v1.12.0 [40713840] IncompleteLU v0.2.1 [7ed4a6bd] LinearSolve v3.17.0 [2679e427] Metis v1.5.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.11.0 [2d112036] OrdinaryDiffEqSDIRK v1.3.0 [0bca4576] SciMLBase v2.97.0 [57bfcd06] SimplexGridFactory v2.4.0 [47a9eef4] SparseDiffTools v2.26.0 [90137ffa] StaticArrays v1.9.13 [0c5d862f] Symbolics v6.40.0 [c5d3f3f7] TetGen v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [f7e6ffb2] Triangulate v2.4.0 [b8865327] UnicodePlots v3.7.2 [37e2e46d] LinearAlgebra v1.12.0 [de0858da] Printf v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_zUnbhQ/Manifest.toml` [47edcb42] ADTypes v1.14.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.13 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.19.0 [4c555306] ArrayLayouts v1.11.1 [13072b0f] AxisAlgorithms v1.1.0 ⌅ [e2ed5e7c] Bijections v0.1.10 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.3.0 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [d360d2e6] ChainRulesCore v1.25.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.29.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.5.8 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [2b5f629d] DiffEqBase v6.175.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.0 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [5b8099bc] DomainSets v0.7.15 [7c1d4256] DynamicPolynomials v0.6.2 [fdbdab4c] ElasticArrays v1.2.12 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.11 [3bbe58f8] ExampleJuggler v2.2.1 [7d51a73a] ExplicitImports v1.11.2 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [a722555e] ExtendableFEM v1.2.0 [12fb9182] ExtendableFEMBase v1.1.0 [cfc395e8] ExtendableGrids v1.13.1 [95c220a8] ExtendableSparse v1.7.1 [411431e0] Extents v0.1.6 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.1.2 [5789e2e9] FileIO v1.17.0 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.0.1 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.4.1 [5c1252a2] GeometryBasics v0.5.9 [86223c79] Graphs v1.13.0 [5eed8a63] GridVisualize v1.12.0 [5573ae12] GridVisualizeTools v3.0.2 [34004b35] HypergeometricFunctions v0.3.28 [ac1192a8] HypertextLiteral v0.9.5 [88f59080] ILUZero v0.2.0 [b5f81e59] IOCapture v0.2.5 [615f187c] IfElse v0.1.1 [40713840] IncompleteLU v0.2.1 [d25df0c9] Inflate v0.1.5 [18e54dd8] IntegerMathUtils v0.1.2 ⌅ [a98d9a8b] Interpolations v0.15.1 [8197267c] IntervalSets v0.7.11 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 ⌅ [70703baa] JuliaSyntax v0.4.10 [ba0b0d4f] Krylov v0.10.1 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.8 [10f19ff3] LayoutPointers v0.1.17 [5078a376] LazyArrays v2.6.1 [9c8b4983] LightXML v0.9.1 [87fe0de2] LineSearch v0.1.4 [7ed4a6bd] LinearSolve v3.17.0 [98b081ad] Literate v2.20.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [299715c1] MarchingCubes v0.1.11 [bb5d69b7] MaybeInplace v0.1.4 [c03570c3] Memoize v0.4.4 [7269a6da] MeshIO v0.5.3 [2679e427] Metis v1.5.0 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.5 [46d2c3a1] MuladdMacro v0.2.4 [102ac46a] MultivariatePolynomials v0.5.9 [d8a4904e] MutableArithmetics v1.6.4 [77ba4419] NaNMath v1.1.3 [8913a72c] NonlinearSolve v4.9.0 [be0214bd] NonlinearSolveBase v1.12.0 [5959db7a] NonlinearSolveFirstOrder v1.5.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.6.0 [26075421] NonlinearSolveSpectralMethods v1.2.0 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [bbf590c4] OrdinaryDiffEqCore v1.26.0 [4302a76b] OrdinaryDiffEqDifferentiation v1.10.0 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.10.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.11.0 [2d112036] OrdinaryDiffEqSDIRK v1.3.0 [90014a1f] PDMats v0.11.35 [65ce6f38] PackageExtensionCompat v1.0.2 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [f27b6e38] Polynomials v4.0.19 [d236fae5] PreallocationTools v0.4.27 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [27ebfcd6] Primes v0.5.7 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.33.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.15 [94e857df] SIMDTypes v0.1.0 [0bca4576] SciMLBase v2.97.0 [19f34311] SciMLJacobianOperators v0.1.6 ⌅ [c0aeaf25] SciMLOperators v0.4.0 [53ae85a6] SciMLStructures v1.7.0 [efcf1570] Setfield v1.1.2 [727e6d20] SimpleNonlinearSolve v2.5.0 [699a6c99] SimpleTraits v0.9.4 [ce78b400] SimpleUnPack v1.1.0 [57bfcd06] SimplexGridFactory v2.4.0 [a2af1166] SortingAlgorithms v1.2.1 [47a9eef4] SparseDiffTools v2.26.0 [0a514795] SparseMatrixColorings v0.4.20 [e56a9233] Sparspak v0.3.11 [276daf66] SpecialFunctions v2.5.1 [a25cea48] SpecialPolynomials v0.5.0 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [7792a7ef] StrideArraysCore v0.5.7 [892a3eda] StringManipulation v0.4.1 [2efcf032] SymbolicIndexingInterface v0.3.40 [19f23fe9] SymbolicLimits v0.2.2 [d1185830] SymbolicUtils v3.29.0 [0c5d862f] Symbolics v6.40.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [ed4db957] TaskLocalValues v0.1.2 [62fd8b95] TensorCore v0.1.1 [8ea1fca8] TermInterface v2.0.0 [c5d3f3f7] TetGen v2.0.0 [8290d209] ThreadingUtilities v0.5.4 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [f7e6ffb2] Triangulate v2.4.0 [410a4b4d] Tricks v0.1.10 [781d530d] TruncatedStacktraces v1.4.0 [3a884ed6] UnPack v1.0.2 [b8865327] UnicodePlots v3.7.2 [a7c27f48] Unityper v0.1.6 [4004b06d] VTKBase v1.0.1 [19fa3120] VertexSafeGraphs v0.2.0 [897b6980] WeakValueDicts v0.1.0 [efce3f68] WoodburyMatrices v1.0.0 [64499a7a] WriteVTK v1.21.2 [5ae413db] EarCut_jll v2.2.4+0 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [94ce4f54] Libiconv_jll v1.18.0+0 [d00139f3] METIS_jll v5.1.3+0 [856f044c] MKL_jll v2025.0.1+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [b47fdcd6] TetGen_jll v1.5.3+0 [5639c1d2] Triangle_jll v1.6.2+0 ⌅ [02c8fc9c] XML2_jll v2.13.6+1 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 5728.3 ms ✓ LazyArrays → LazyArraysStaticArraysExt 11352.5 ms ✓ RecursiveArrayTools 56516.2 ms ✓ SymbolicUtils 19466.8 ms ✓ SparseDiffTools 4096.3 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 4428.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 26839.0 ms ✓ SciMLBase ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 547 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1213 wait_forever at ./task.jl:1150 jfptr_wait_forever_42753.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1213 wait_forever at ./task.jl:1150 jfptr_wait_forever_42753.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007dadd68083d0 Total snapshots: 432. Utilization: 0% ╎432 @Base/task.jl:1150 wait_forever() 431╎ 432 @Base/task.jl:1213 wait() [547] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/ExtendableFEM/3fBdq/test/runtests.jl:4 _ZNK4llvm13AttributeList9hasFnAttrENS_9Attribute8AttrKindE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm22OptNoneInstrumentation9shouldRunENS_9StringRefENS_3AnyE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6detail18UniqueFunctionBaseIbJNS_9StringRefENS_3AnyEEE8CallImplIZNS_22OptNoneInstrumentation17registerCallbacksERNS_28PassInstrumentationCallbacksEEUlS2_S3_E_EEbPvS2_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:791 operator() at /source/src/jitlayers.cpp:1475 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1436 [inlined] operator() at /source/src/jitlayers.cpp:1588 [inlined] addModule at /source/src/jitlayers.cpp:2045 jl_compile_codeinst_now at /source/src/jitlayers.cpp:649 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:840 jl_compile_method_internal at /source/src/gf.c:3131 _jl_invoke at /source/src/gf.c:3603 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2340 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:896 #invokelatest_gr#232 at ./reflection.jl:0 [inlined] invokelatest_gr at ./reflection.jl:1274 [inlined] #handle_message_nothrow#2 at ./logging/logging.jl:428 handle_message_nothrow at ./logging/logging.jl:425 macro expansion at ./logging/logging.jl:355 [inlined] #warning_empty#40 at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 [inlined] warning_empty at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1360 [inlined] #print#5 at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:358 print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 [inlined] print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 [inlined] print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 _peek_report at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:94 unknown function (ip: 0x74dbae6eb57f) at (unknown file) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2340 [inlined] jl_f_invokelatest at /source/src/builtins.c:877 PkgEval terminated after 2732.36s: test duration exceeded the time limit