Package evaluation of CausalityTools on Julia 1.13.0-DEV.717 (51214a7524*) started at 2025-06-08T21:58:00.692 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.16s ################################################################################ # Installation # Installing CausalityTools... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [5520caf5] + CausalityTools v3.0.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [13072b0f] + AxisAlgorithms v1.1.0 [49dc2e85] + Calculus v0.5.2 [5520caf5] + CausalityTools v3.0.0 [d360d2e6] + ChainRulesCore v1.25.1 [35d6a980] + ColorSchemes v3.29.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [38540f10] + CommonSolve v0.2.4 [34da2185] + Compat v4.16.0 ⌃ [ab4b797d] + ComplexityMeasures v3.6.6 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.5.8 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 ⌅ [717857b8] + DSP v0.7.10 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 ⌃ [5732040d] + DelayEmbeddings v2.7.4 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [7a1cc6ca] + FFTW v1.9.0 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 [86223c79] + Graphs v1.13.0 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.5 [d25df0c9] + Inflate v0.1.5 ⌅ [a98d9a8b] + Interpolations v0.15.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [fc60dff9] + LombScargle v1.0.3 [1914dd2f] + MacroTools v0.5.16 [299715c1] + MarchingCubes v0.1.11 [eff96d63] + Measurements v2.12.0 [e1d29d7a] + Missings v1.2.0 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.21 [645ca80c] + Neighborhood v0.2.4 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [f27b6e38] + Polynomials v4.0.19 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 ⌃ [639c3291] + RecurrenceAnalysis v2.0.8 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [f2b01f46] + Roots v2.2.7 [6c6a2e73] + Scratch v1.2.1 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 ⌅ [40b095a5] + StateSpaceSets v1.5.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [62fd8b95] + TensorCore v0.1.1 ⌃ [c804724b] + TimeseriesSurrogates v2.7.1 [b8865327] + UnicodePlots v3.7.2 [29a6e085] + Wavelets v0.10.1 [efce3f68] + WoodburyMatrices v1.0.0 [f5851436] + FFTW_jll v3.3.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [856f044c] + MKL_jll v2025.0.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 4.95s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 635.77s ################################################################################ # Testing # Testing CausalityTools Status `/tmp/jl_HvqKS7/Project.toml` [8e462317] CausalInference v0.19.1 [5520caf5] CausalityTools v3.0.0 [861a8166] Combinatorics v1.0.3 ⌃ [5732040d] DelayEmbeddings v2.7.4 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 ⌃ [6e36e845] DynamicalSystemsBase v3.10.0 [86223c79] Graphs v1.13.0 [09f84164] HypothesisTests v0.11.5 [645ca80c] Neighborhood v0.2.4 [860ef19b] StableRNGs v1.0.3 ⌅ [40b095a5] StateSpaceSets v1.5.0 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.5 ⌃ [c804724b] TimeseriesSurrogates v2.7.1 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_HvqKS7/Manifest.toml` [47edcb42] ADTypes v1.14.0 [14f7f29c] AMD v0.5.3 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.19.0 [13072b0f] AxisAlgorithms v1.1.0 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [50ba71b6] BitBasis v0.9.10 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [49dc2e85] Calculus v0.5.2 [8e462317] CausalInference v0.19.1 [5520caf5] CausalityTools v3.0.0 [d360d2e6] ChainRulesCore v1.25.1 ⌅ [60701a23] CliqueTrees v0.4.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [35d6a980] ColorSchemes v3.29.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 ⌃ [ab4b797d] ComplexityMeasures v3.6.6 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.5.8 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 ⌅ [717857b8] DSP v0.7.10 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 ⌃ [5732040d] DelayEmbeddings v2.7.4 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.175.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌃ [6e36e845] DynamicalSystemsBase v3.10.0 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.11 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7a1cc6ca] FFTW v1.9.0 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.1.2 [5789e2e9] FileIO v1.17.0 [1a297f60] FillArrays v1.13.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 ⌅ [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [86223c79] 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NearestNeighbors v0.4.21 [645ca80c] Neighborhood v0.2.4 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [bbf590c4] OrdinaryDiffEqCore v1.26.0 [b1df2697] OrdinaryDiffEqTsit5 v1.1.0 [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [f27b6e38] Polynomials v4.0.19 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 ⌃ [639c3291] RecurrenceAnalysis v2.0.8 [731186ca] RecursiveArrayTools v3.33.0 [189a3867] Reexport v1.2.2 [42d2dcc6] Referenceables v0.1.3 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [f2b01f46] Roots v2.2.7 [7e49a35a] RuntimeGeneratedFunctions v0.5.15 [94e857df] SIMDTypes v0.1.0 [0bca4576] SciMLBase v2.97.0 [c0aeaf25] SciMLOperators v1.3.1 [53ae85a6] SciMLStructures v1.7.0 [6c6a2e73] Scratch v1.2.1 [efcf1570] Setfield v1.1.2 [699a6c99] SimpleTraits v0.9.4 [ce78b400] SimpleUnPack v1.1.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [171d559e] SplittablesBase v0.1.15 [860ef19b] StableRNGs v1.0.3 ⌅ [40b095a5] StateSpaceSets v1.5.0 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [7792a7ef] StrideArraysCore v0.5.7 [892a3eda] StringManipulation v0.4.1 [2efcf032] SymbolicIndexingInterface v0.3.40 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3eeacb1d] TabularDisplay v1.3.0 [62fd8b95] TensorCore v0.1.1 [8290d209] ThreadingUtilities v0.5.4 [ac1d9e8a] ThreadsX v0.1.12 ⌃ [c804724b] TimeseriesSurrogates v2.7.1 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.84 [7d267fc5] TreeWidthSolver v0.3.5 [781d530d] TruncatedStacktraces v1.4.0 [3a884ed6] UnPack v1.0.2 [b8865327] UnicodePlots v3.7.2 [29a6e085] Wavelets v0.10.1 [efce3f68] WoodburyMatrices v1.0.0 [f5851436] FFTW_jll v3.3.11+0 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [d00139f3] METIS_jll v5.1.3+0 [856f044c] MKL_jll v2025.0.1+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 28901.1 ms ✓ PrettyTables 9633.7 ms ✓ ForwardDiff 4465.1 ms ✓ SymbolicIndexingInterface 4318.4 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 3707.2 ms ✓ FastPower → FastPowerForwardDiffExt 1878.3 ms ✓ Roots → RootsForwardDiffExt 6001.0 ms ✓ RecursiveArrayTools 4092.7 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 4014.5 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 4311.8 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 25585.2 ms ✓ SciMLBase 9928.9 ms ✓ DiffEqBase 9330.5 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 6252.1 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 12632.1 ms ✓ OrdinaryDiffEqCore 6381.7 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 17862.5 ms ✓ OrdinaryDiffEqTsit5 Info Given DynamicalSystemsBase was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in foreach(Any, Any) at abstractarray.jl 13584.8 ms ✓ DynamicalSystemsBase 18 dependencies successfully precompiled in 175 seconds. 126 already precompiled. 8 dependencies had output during precompilation: ┌ OrdinaryDiffEqCore │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in foreach(Any, Any) at abstractarray.jl └ ┌ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in foreach(Any, Any) at abstractarray.jl └ ┌ OrdinaryDiffEqTsit5 │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in foreach(Any, Any) at abstractarray.jl └ ┌ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in foreach(Any, Any) at abstractarray.jl └ ┌ DiffEqBase → DiffEqBaseForwardDiffExt │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in foreach(Any, Any) at abstractarray.jl └ ┌ DiffEqBase │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in foreach(Any, Any) at abstractarray.jl └ ┌ DiffEqBase → DiffEqBaseSparseArraysExt │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in foreach(Any, Any) at abstractarray.jl └ ┌ DynamicalSystemsBase │ [Output was shown above] └ WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in foreach(Any, Any) at abstractarray.jl Precompiling packages... 3463.2 ms ✓ RecursiveArrayTools → RecursiveArrayToolsMeasurementsExt 1 dependency successfully precompiled in 4 seconds. 49 already precompiled. Precompiling packages... 2245.4 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 1 dependency successfully precompiled in 2 seconds. 23 already precompiled. Precompiling packages... 6028.8 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 1 dependency successfully precompiled in 8 seconds. 66 already precompiled. Precompiling packages... 1374.5 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1 dependency successfully precompiled in 1 seconds. 18 already precompiled. Precompiling packages... Info Given DiffEqBaseMeasurementsExt was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in foreach(Any, Any) at abstractarray.jl 5823.2 ms ✓ DiffEqBase → DiffEqBaseMeasurementsExt 1 dependency successfully precompiled in 7 seconds. 100 already precompiled. 1 dependency had output during precompilation: ┌ DiffEqBase → DiffEqBaseMeasurementsExt │ [Output was shown above] └ Precompiling packages... Info Given DiffEqBaseDistributionsExt was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in foreach(Any, Any) at abstractarray.jl 8797.5 ms ✓ DiffEqBase → DiffEqBaseDistributionsExt 1 dependency successfully precompiled in 12 seconds. 129 already precompiled. 1 dependency had output during precompilation: ┌ DiffEqBase → DiffEqBaseDistributionsExt │ [Output was shown above] └ Precompiling packages... Info Given DiffEqBaseChainRulesCoreExt was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in foreach(Any, Any) at abstractarray.jl 6198.6 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 1 dependency successfully precompiled in 7 seconds. 99 already precompiled. 1 dependency had output during precompilation: ┌ DiffEqBase → DiffEqBaseChainRulesCoreExt │ [Output was shown above] └ ┌ Warning: Convenience function `jdd` is deprecated. Use `association(JointDistanceDistribution(; kwargs...), x, y)` instead. └ @ CausalityTools ~/.julia/packages/CausalityTools/uitzk/src/deprecations/v3/joint_distance_distribution.jl:13 ┌ Warning: jdd(::OneSampleTTest, x, y; kwargs...) is deprecated. Instead, do `measure = JointDistanceDistribution(); independence(JointDistanceDistributionTest(measure), x, y)`. └ @ CausalityTools ~/.julia/packages/CausalityTools/uitzk/src/deprecations/v3/joint_distance_distribution.jl:29 ┌ Warning: Passing `m` as an argument to `OrdinalPattern...(m = ...)` is deprecated. Pass it as a type parameter instead: `OrdinalPattern...{m}`. └ @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/qgP6s/src/deprecations.jl:97 ┌ Warning: Passing `m` as an argument to `OrdinalPattern...(m = ...)` is deprecated. Pass it as a type parameter instead: `OrdinalPattern...{m}`. └ @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/qgP6s/src/deprecations.jl:97 ┌ Warning: Passing `m` as an argument to `OrdinalPattern...(m = ...)` is deprecated. Pass it as a type parameter instead: `OrdinalPattern...{m}`. └ @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/qgP6s/src/deprecations.jl:97 ┌ Warning: Assignment to `c` in soft scope is ambiguous because a global variable by the same name exists: `c` will be treated as a new local. Disambiguate by using `local c` to suppress this warning or `global c` to assign to the existing global variable. └ @ ~/.julia/packages/CausalityTools/uitzk/test/methods/information/core/counts.jl:16 ┌ Warning: Passing `m` as an argument to `OrdinalPattern...(m = ...)` is deprecated. Pass it as a type parameter instead: `OrdinalPattern...{m}`. └ @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/qgP6s/src/deprecations.jl:97 ┌ Warning: Passing `m` as an argument to `OrdinalPattern...(m = ...)` is deprecated. Pass it as a type parameter instead: `OrdinalPattern...{m}`. └ @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/qgP6s/src/deprecations.jl:97 Information: Error During Test at /home/pkgeval/.julia/packages/CausalityTools/uitzk/test/methods/information/conditional_mutual_informations/cmi_shannon.jl:32 Test threw exception Expression: association(est, x, y, z) ≥ 0 MethodError: no method matching Probabilities(::Array{Int64, 3}, ::Tuple{Vector{String}, Vector{String}, Vector{Int64}}, ::Tuple{Symbol, Symbol, Symbol}) The type `Probabilities` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: Probabilities(::AbstractArray{T, N}, !Matched::NTuple{N, V} where V, ::NTuple{N, S}; normed) where {T, N, S} @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/qgP6s/src/core/probabilities.jl:59 Probabilities(::AbstractArray{T, N}, ::Tuple; normed) where {T, N} @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/qgP6s/src/core/probabilities.jl:92 Probabilities(!Matched::AbstractVector, !Matched::AbstractVector, ::Any; normed) @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/qgP6s/src/core/probabilities.jl:114 ... Stacktrace: [1] Probabilities(x::Counts{Int64, 3, Symbol}) @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/qgP6s/src/core/probabilities.jl:107 [2] probabilities @ ~/.julia/packages/CausalityTools/uitzk/src/methods/information/counts_and_probs/probabilities.jl:59 [inlined] [3] association(est::JointProbabilities{CMIShannon{Int64}, UniqueElements, RelativeAmount}, x::Vector{String}, y::Vector{String}, z::Vector{Int64}) @ CausalityTools ~/.julia/packages/CausalityTools/uitzk/src/methods/information/definitions/conditional_mutual_informations/CMIShannon.jl:67 [4] top-level scope @ ~/.julia/packages/CausalityTools/uitzk/test/methods/information/conditional_mutual_informations/cmi_shannon.jl:518 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:727 [inlined] Information: Error During Test at /home/pkgeval/.julia/packages/CausalityTools/uitzk/test/runtests.jl:4 Got exception outside of a @test LoadError: MethodError: no method matching Probabilities(::Array{Int64, 3}, ::Tuple{Vector{String}, Vector{String}, Vector{Int64}}, ::Tuple{Symbol, Symbol, Symbol}) The type `Probabilities` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: Probabilities(::AbstractArray{T, N}, !Matched::NTuple{N, V} where V, ::NTuple{N, S}; normed) where {T, N, S} @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/qgP6s/src/core/probabilities.jl:59 Probabilities(::AbstractArray{T, N}, ::Tuple; normed) where {T, N} @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/qgP6s/src/core/probabilities.jl:92 Probabilities(!Matched::AbstractVector, !Matched::AbstractVector, ::Any; normed) @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/qgP6s/src/core/probabilities.jl:114 ... Stacktrace: [1] Probabilities(x::Counts{Int64, 3, Symbol}) @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/qgP6s/src/core/probabilities.jl:107 [2] probabilities(est::RelativeAmount, c::Counts{Int64, 3, Symbol}) @ CausalityTools ~/.julia/packages/CausalityTools/uitzk/src/methods/information/counts_and_probs/probabilities.jl:62 [3] probabilities(::Vector{String}, ::Vector{String}, ::Vector{Int64}) @ CausalityTools ~/.julia/packages/CausalityTools/uitzk/src/methods/information/counts_and_probs/probabilities.jl:73 [4] top-level scope @ ~/.julia/packages/CausalityTools/uitzk/test/methods/information/conditional_mutual_informations/cmi_tsallis_papetrou.jl:19 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [6] top-level scope @ ~/.julia/packages/CausalityTools/uitzk/test/methods/information/conditional_mutual_informations/conditional_mutual_informations.jl:2 [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [8] top-level scope @ ~/.julia/packages/CausalityTools/uitzk/test/methods/information/information.jl:7 [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [10] IncludeInto @ ./Base.jl:311 [inlined] [11] macro expansion @ ~/.julia/packages/CausalityTools/uitzk/test/runtests.jl:4 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [13] testfile(file::String, testname::String) @ Main ~/.julia/packages/CausalityTools/uitzk/test/runtests.jl:4 [14] top-level scope @ ~/.julia/packages/CausalityTools/uitzk/test/methods/methods.jl:4 [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [16] IncludeInto @ ./Base.jl:311 [inlined] [17] macro expansion @ ~/.julia/packages/CausalityTools/uitzk/test/runtests.jl:4 [inlined] [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [19] testfile(file::String, testname::String) @ Main ~/.julia/packages/CausalityTools/uitzk/test/runtests.jl:4 [20] top-level scope @ ~/.julia/packages/CausalityTools/uitzk/test/runtests.jl:7 [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [22] macro expansion @ ~/.julia/packages/CausalityTools/uitzk/test/runtests.jl:9 [inlined] [23] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [24] top-level scope @ none:6 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:290 [27] _start() @ Base ./client.jl:557 in expression starting at /home/pkgeval/.julia/packages/CausalityTools/uitzk/test/methods/information/conditional_mutual_informations/cmi_tsallis_papetrou.jl:19 in expression starting at /home/pkgeval/.julia/packages/CausalityTools/uitzk/test/methods/information/conditional_mutual_informations/conditional_mutual_informations.jl:2 in expression starting at /home/pkgeval/.julia/packages/CausalityTools/uitzk/test/methods/information/information.jl:7 ┌ Warning: `PMI` is deprecated, use `PartialMutualInformation` instead. │ caller = top-level scope at part_mutual_information.jl:13 └ @ Core ~/.julia/packages/CausalityTools/uitzk/test/independence/LocalPermutationTest/part_mutual_information.jl:13 ┌ Warning: `PMI` is deprecated, use `PartialMutualInformation` instead. │ caller = top-level scope at part_mutual_information.jl:14 └ @ Core ~/.julia/packages/CausalityTools/uitzk/test/independence/LocalPermutationTest/part_mutual_information.jl:14 ┌ Warning: `PMI` is deprecated, use `PartialMutualInformation` instead. │ caller = top-level scope at part_mutual_information.jl:15 └ @ Core ~/.julia/packages/CausalityTools/uitzk/test/independence/LocalPermutationTest/part_mutual_information.jl:15 GC error (probable corruption) Allocations: 226550062 (Pool: 226548007; Big: 2055); GC: 134 !!! ERROR in jl_ -- ABORTING !!! thread 0 ptr queue: ~~~~~~~~~~ ptr queue top ~~~~~~~~~~ !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== !!! ERROR in jl_ -- ABORTING !!! ========== ========== Base.Dict{String, Int64}(slots=Memory{UInt8}(16, 0x779892fa6c00)[0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0xd5, 0xc1, 0x00, 0x00, 0x00, 0x95, 0x00, 0x00], keys=Memory{String}(16, 0x7798b3a4ae60)[ #, #, #, #, #, #, #, #, "city", "under a rock", #, #, #, "countryside", #, #], vals=Memory{Int64}(16, 0x7798b3a4af00)[1, 21, 131497389495280, 131497389495312, 22, 22, 131497389495344, 131497389495376, 1, 3, 131497389495408, 131497389495440, 24, 2, 131497389495472, 131497389495504], ndel=0, count=3, age=0x0000000000000004, idxfloor=1, maxprobe=1) ========== Base.Dict{Int64, String}(slots=Memory{UInt8}(16, 0x779892fa6c30)[0xfc, 0xae, 0x00, 0xdf, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00], keys=Memory{Int64}(16, 0x7798b3a4afa0)[3, 2, 1, 1, 2, 2, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0], vals=Memory{String}(16, 0x7798b3a4b040)[ "under a rock", "countryside", #, "city", #, #, #, #, #, #, #, #, #, #, #, #], ndel=0, count=3, age=0x0000000000000004, idxfloor=1, maxprobe=0) ========== ~~~~~~~~~~ ptr queue bottom ~~~~~~~~~~ [243] signal 6 (-6): Aborted in expression starting at /home/pkgeval/.julia/packages/CausalityTools/uitzk/test/independence/SurrogateAssociationTest/ConditionalMutualInformation.jl:92 unknown function (ip: 0x7798cae47ebc) at /lib/x86_64-linux-gnu/libc.so.6 gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) gc_dump_queue_and_abort at /source/src/gc-stock.c:1669 gc_mark_outrefs at /source/src/gc-stock.c:2370 [inlined] gc_mark_loop_serial_ at /source/src/gc-stock.c:2524 gc_mark_loop_serial at /source/src/gc-stock.c:2547 gc_mark_loop at /source/src/gc-stock.c:2735 [inlined] _jl_gc_collect at /source/src/gc-stock.c:3080 ijl_gc_collect at /source/src/gc-stock.c:3489 maybe_collect at /source/src/gc-stock.c:349 [inlined] jl_gc_small_alloc_inner at /source/src/gc-stock.c:725 jl_gc_small_alloc_noinline at /source/src/gc-stock.c:783 [inlined] jl_gc_alloc_ at /source/src/gc-stock.c:797 jl_alloc_genericmemory_unchecked at /source/src/genericmemory.c:41 GenericMemory at ./boot.jl:588 [inlined] Array at ./boot.jl:647 [inlined] Array at ./boot.jl:660 [inlined] similar at ./abstractarray.jl:872 [inlined] similar at ./abstractarray.jl:871 [inlined] similar at ./broadcast.jl:228 [inlined] similar at ./broadcast.jl:227 [inlined] copy at ./broadcast.jl:921 [inlined] materialize at ./broadcast.jl:896 [inlined] codify at /home/pkgeval/.julia/packages/ComplexityMeasures/qgP6s/src/outcome_spaces/unique_elements.jl:40 #counts##10 at ./none (unknown line) unknown function (ip: 0x7798a4134d62) at (unknown file) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 iterate at ./generator.jl:48 [inlined] counts at /home/pkgeval/.julia/packages/CausalityTools/uitzk/src/methods/information/counts_and_probs/counts.jl:204 probabilities at /home/pkgeval/.julia/packages/CausalityTools/uitzk/src/methods/information/counts_and_probs/probabilities.jl:126 association at /home/pkgeval/.julia/packages/CausalityTools/uitzk/src/methods/information/definitions/conditional_mutual_informations/CMIShannon.jl:67 #independence##2 at /home/pkgeval/.julia/packages/CausalityTools/uitzk/src/independence_tests/surrogate/SurrogateAssociationTest.jl:133 [inlined] independence at /home/pkgeval/.julia/packages/CausalityTools/uitzk/src/independence_tests/surrogate/SurrogateAssociationTest.jl:143 unknown function (ip: 0x7798963acfb7) at (unknown file) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2340 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 _include at ./loading.jl:2906 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_52508.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2340 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 _include at ./loading.jl:2906 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_52508.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2340 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 _include at ./loading.jl:2906 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 [inlined] macro expansion at /home/pkgeval/.julia/packages/CausalityTools/uitzk/test/runtests.jl:4 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] testfile at /home/pkgeval/.julia/packages/CausalityTools/uitzk/test/runtests.jl:4 testfile at /home/pkgeval/.julia/packages/CausalityTools/uitzk/test/runtests.jl:4 unknown function (ip: 0x77989893a532) at (unknown file) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2340 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 _include at ./loading.jl:2906 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_52508.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2340 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 exec_options at ./client.jl:290 _start at ./client.jl:557 jfptr__start_50265.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2340 [inlined] true_main at /source/src/jlapi.c:964 jl_repl_entrypoint at /source/src/jlapi.c:1132 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7798cade4249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 226550062 (Pool: 226548007; Big: 2055); GC: 134 Testing failed after 667.46s ERROR: LoadError: Package CausalityTools errored during testing (received signal: 6) Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2421 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2276 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:498 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:309 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:324 [12] _start() @ Base ./client.jl:557 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval crashed after 1354.72s: GC corruption was detected ################################################################################ # Bug reporting # The package crashed during testing (reason=gc_corruption), but PkgEval was unable to reproduce the crash under rr (status=fail, reason=test_errors). For debugging, here is the tail end of the rr log: > ˧ Querying new variables conditioned on already selected variables... > x₁(0) ⫫ x₂(-1) | {x₁(-1)} > > Inferring parents for x2(0) > ˧ Querying pairwise associations... > x₂(0) !⫫ x₁(-1) | ∅ > ˧ Querying new variables conditioned on already selected variables... > x₂(0) ⫫ x₂(-1) | {x₁(-1)} > x₁(0) ← {x₁(-1)}x₂(0) ← {x₁(-1)}Precompiling packages... > 8356.3 ms ✓ Transducers → TransducersAdaptExt > 7328.3 ms ✓ Transducers → TransducersReferenceablesExt > 5468.3 ms ✓ BitBasis > 5442.7 ms ✓ BangBang → BangBangStaticArraysExt > 22548.7 ms ✓ Metis → MetisGraphs > 53353.7 ms ✓ JLD2 > 9484.8 ms ✓ ThreadsX > 22438.3 ms ✓ TreeWidthSolver > 35659.0 ms ✓ MetaGraphs > 24123.0 ms ✓ CliqueTrees > 207609.1 ms ✓ CausalInference > 11 dependencies successfully precompiled in 480 seconds. 131 already precompiled. > Precompiling packages... > 19290.2 ms ✓ JLD2 → UnPackExt > 1 dependency successfully precompiled in 31 seconds. 35 already precompiled. > Precompiling packages... > 5979.6 ms ✓ LogarithmicNumbers → LogarithmicNumbersForwardDiffExt > 1 dependency successfully precompiled in 10 seconds. 20 already precompiled. > Skeleton (conditional, level 𝓁=1): Removing Edge 1 => 4 and Edge 4 => 1 (p = 0.18636079041680942) > Skeleton (conditional, level 𝓁=1): Removing Edge 1 => 5 and Edge 5 => 1 (p = 0.948753842549287) > Skeleton (conditional, level 𝓁=1): Removing Edge 2 => 3 and Edge 3 => 2 (p = 0.7237613298100423) > Skeleton (conditional, level 𝓁=1): Removing Edge 2 => 5 and Edge 5 => 2 (p = 0.7226954522836713) > Skeleton (conditional, level 𝓁=1): Removing Edge 3 => 2 and Edge 2 => 3 (p = 0.7237613298100449) > Skeleton (conditional, level 𝓁=1): Removing Edge 3 => 5 and Edge 5 => 3 (p = 0.06959590969265217) > Skeleton (conditional, level 𝓁=1): Removing Edge 4 => 1 and Edge 1 => 4 (p = 0.18636079041720977) > Skeleton (conditional, level 𝓁=1): Removing Edge 5 => 1 and Edge 1 => 5 (p = 0.948753842549287) > Skeleton (conditional, level 𝓁=1): Removing Edge 5 => 2 and Edge 2 => 5 (p = 0.7226954522836713) > Skeleton (conditional, level 𝓁=1): Removing Edge 5 => 3 and Edge 3 => 5 (p = 0.06959590969265328) > Orienting v-structures... > (Rule 0) Oriented 2 ↔ 4 ↔ 3 as 2 → 4 ← 3 > Applying rules sequentially ... (#1) > (Rule 1) Oriented 2 → 4 ↔ 5 as 2 → 4 → 5 > Applying rules sequentially ... (#2) > No edge was redirected in this iteration. Stopping. > Finished orientiation! > Test Summary: | Pass Error Total Time > CausalityTools.jl | 469 2 471 17m53.1s > Deprecations | 0 0.0s > Methods | 318 2 320 5m14.8s > Closeness | 42 42 32.1s > Ccm like | 56 56 15.3s > Correlation | 17 17 16.7s > Information | 166 2 168 1m58.8s > JointProbabilities with MIShannon | 4 4 1.6s > JointProbabilities with MIRenyiJizba | 4 4 0.1s > JointProbabilities with MIRenyiSarbu | 4 4 0.1s > JointProbabilities with MITsallisFuruichi | 4 4 0.1s > JointProbabilities with MITsallisMartin | 4 4 0.1s > EntropyDecomposition with MIShannon | 4 4 12.0s > EntropyDecomposition with MITsallisMartin | 4 4 0.4s > EntropyDecomposition with MITsallisFuruichi | 4 4 0.2s > EntropyDecomposition with MIRenyiSarbu | 8 8 0.2s > Recurrence | 31 31 2m11.5s > Deprecations | 6 6 0.1s > Independence | 122 122 1m44.5s > Causal graphs | 29 29 10m16.4s > RNG of the outermost testset: Xoshiro(0xd167cb3598452a31, 0x1440b06ef02df189, 0xd4ed0ba06794e930, 0x68686f8d403713bf, 0x11a62381303916f5) > ERROR: LoadError: Some tests did not pass: 469 passed, 0 failed, 2 errored, 0 broken. > in expression starting at /home/pkgeval/.julia/packages/CausalityTools/uitzk/test/runtests.jl:6 > > Testing failed after 1192.16s > > ERROR: LoadError: Package CausalityTools errored during testing > Stacktrace: > [1] pkgerror(msg::String) > @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 > [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) > @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2421 > [3] test > @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2276 [inlined] > [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) > @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:498 > [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) > @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 > [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) > @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 > [7] test > @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] > [8] #test#81 > @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] > [9] top-level scope > @ /PkgEval.jl/scripts/evaluate.jl:217 > [10] include(mod::Module, _path::String) > @ Base ./Base.jl:309 > [11] exec_options(opts::Base.JLOptions) > @ Base ./client.jl:324 > [12] _start() > @ Base ./client.jl:557 > in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 > > PkgEval failed after 1265.77s: package tests unexpectedly errored