Package evaluation of ClimaUtilities on Julia 1.13.0-DEV.692 (1ea959a8b1*) started at 2025-06-05T12:20:52.864 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.11s ################################################################################ # Installation # Installing ClimaUtilities... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [b3f4f4ca] + ClimaUtilities v0.1.24 Updating `~/.julia/environments/v1.13/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [3a4d1b5c] + ClimaComms v0.6.7 [b3f4f4ca] + ClimaUtilities v0.1.24 [e6f89c97] + LoggingExtras v1.1.0 [ae029012] + Requires v1.3.1 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Installation completed after 3.2s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 988.18s ################################################################################ # Testing # Testing ClimaUtilities Status `/tmp/jl_YZkaAi/Project.toml` [4c88cf16] Aqua v0.8.13 ⌅ [179af706] CFTime v0.1.4 [3a4d1b5c] ClimaComms v0.6.7 [d414da3d] ClimaCore v0.14.34 [d934ef94] ClimaCoreTempestRemap v0.3.18 [595c0a79] ClimaTimeSteppers v0.8.5 [b3f4f4ca] ClimaUtilities v0.1.24 [e30172f5] Documenter v1.11.4 ⌃ [a98d9a8b] Interpolations v0.15.1 [98e50ef6] JuliaFormatter v2.1.2 [85f8d34a] NCDatasets v0.14.8 [1bc83da4] SafeTestsets v0.1.0 [0bca4576] SciMLBase v2.96.0 [56f22d72] Artifacts v1.11.0 [ade2ca70] Dates v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [44cfe95a] Pkg v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_YZkaAi/Manifest.toml` [47edcb42] ADTypes v1.14.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [4c88cf16] Aqua v0.8.13 [4fba245c] ArrayInterface v7.19.0 [4c555306] ArrayLayouts v1.11.1 [a9b6321e] Atomix v1.1.1 [13072b0f] AxisAlgorithms v1.1.0 [aae01518] BandedMatrices v1.9.4 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.6.3 ⌅ [179af706] CFTime v0.1.4 [2a0fbf3d] CPUSummary v0.2.6 [d360d2e6] ChainRulesCore v1.25.1 [3a4d1b5c] ClimaComms v0.6.7 [d414da3d] ClimaCore v0.14.34 [d934ef94] ClimaCoreTempestRemap v0.3.18 [595c0a79] ClimaTimeSteppers v0.8.5 [b3f4f4ca] ClimaUtilities v0.1.24 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [1fbeeb36] CommonDataModel v0.3.8 [a80b9123] CommonMark v0.9.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.5.8 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [7445602f] CubedSphere v0.3.2 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [2b5f629d] DiffEqBase v6.175.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [3c3547ce] DiskArrays v0.4.13 [ffbed154] DocStringExtensions v0.9.4 [e30172f5] Documenter v1.11.4 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.11 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.1.2 [1a297f60] FillArrays v1.13.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.0.1 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [d54b0c1a] GaussQuadrature v0.5.8 [88fa7841] GilbertCurves v0.1.0 [d7ba0133] Git v1.4.0 [c27321d9] Glob v1.3.1 [f67ccb44] HDF5 v0.17.2 [b5f81e59] IOCapture v0.2.5 [615f187c] IfElse v0.1.1 ⌃ [a98d9a8b] Interpolations v0.15.1 [8197267c] IntervalSets v0.7.11 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [98e50ef6] JuliaFormatter v2.1.2 ⌅ [70703baa] JuliaSyntax v0.4.10 [63c18a36] KernelAbstractions v0.9.34 [ba0b0d4f] Krylov v0.10.1 ⌅ [0b1a1467] KrylovKit v0.8.3 [8ac3fa9e] LRUCache v1.6.2 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [0e77f7df] LazilyInitializedFields v1.3.0 [9dccce8e] LazyBroadcast v1.0.0 [5c8ed15e] LinearOperators v2.10.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [d0879d2d] MarkdownAST v0.1.2 [2e0e35c7] Moshi v0.3.5 [46d2c3a1] MuladdMacro v0.2.4 [c3c07f87] MultiBroadcastFusion v0.3.3 [85f8d34a] NCDatasets v0.14.8 [5da4648a] NVTX v1.0.0 [77ba4419] NaNMath v1.1.3 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [65ce6f38] PackageExtensionCompat v1.0.2 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [eebad327] PkgVersion v0.3.3 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.33.0 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [7181ea78] RootSolvers v0.4.4 [7e49a35a] RuntimeGeneratedFunctions v0.5.15 [94e857df] SIMDTypes v0.1.0 [1bc83da4] SafeTestsets v0.1.0 [0bca4576] SciMLBase v2.96.0 [c0aeaf25] SciMLOperators v1.3.1 [53ae85a6] SciMLStructures v1.7.0 [efcf1570] Setfield v1.1.2 [276daf66] SpecialFunctions v2.5.1 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [7792a7ef] StrideArraysCore v0.5.7 [892a3eda] StringManipulation v0.4.1 [2efcf032] SymbolicIndexingInterface v0.3.40 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 ⌅ [6aa5eb33] TaylorSeries v0.19.1 [8290d209] ThreadingUtilities v0.5.4 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [781d530d] TruncatedStacktraces v1.4.0 [3a884ed6] UnPack v1.0.2 [0fe1646c] UnrolledUtilities v0.1.9 [013be700] UnsafeAtomics v0.3.0 ⌅ [409d34a3] VectorInterface v0.4.9 [efce3f68] WoodburyMatrices v1.0.0 [0b7ba130] Blosc_jll v1.21.7+0 [6e34b625] Bzip2_jll v1.0.9+0 [2e619515] Expat_jll v2.6.5+0 [f8c6e375] Git_jll v2.49.0+0 ⌅ [0234f1f7] HDF5_jll v1.14.3+3 [e33a78d0] Hwloc_jll v2.12.1+0 [9c1d0b0a] JuliaNVTXCallbacks_jll v0.2.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 [7cb0a576] MPICH_jll v4.3.0+1 [f1f71cc9] MPItrampoline_jll v5.5.3+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [e98f9f5b] NVTX_jll v3.1.1+0 ⌅ [7243133f] NetCDF_jll v400.902.211+1 [656ef2d0] OpenBLAS32_jll v0.3.29+0 ⌅ [fe0851c0] OpenMPI_jll v4.1.8+1 [9bd350c2] OpenSSH_jll v10.0.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [8573a8c5] TempestRemap_jll v2.2.0+0 ⌅ [02c8fc9c] XML2_jll v2.13.6+1 [ffd25f8a] XZ_jll v5.8.1+0 [477f73a3] libaec_jll v1.1.3+0 [337d8026] libzip_jll v1.11.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.0+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter ~/.julia/packages/Documenter/iRt2s/src/utilities/utilities.jl:665 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Quality Assurance tests | 11 11 1m27.4s Test Summary: | Pass Total Time Utils tests | 50 50 2.3s ┌ Warning: Removing /home/pkgeval/.julia/packages/ClimaUtilities/OHLAs/test/jl_5IgtOX/dormouse └ @ ClimaUtilities.OutputPathGenerator ~/.julia/packages/ClimaUtilities/OHLAs/src/OutputPathGenerator.jl:157 ┌ Warning: `style` as first argument was moved to a keyword argument │ caller = (::Main.var"##OutputPathGenerator tests#287".var"#26#27")(base_output_dir::String) at output_path_generator.jl:221 └ @ Core ~/.julia/packages/ClimaUtilities/OHLAs/test/output_path_generator.jl:221 ┌ Warning: `style` as first argument was moved to a keyword argument │ caller = (::Main.var"##OutputPathGenerator tests#287".var"#28#29")(base_output_dir::String) at output_path_generator.jl:236 └ @ Core ~/.julia/packages/ClimaUtilities/OHLAs/test/output_path_generator.jl:236 Test Summary: | Pass Total Time OutputPathGenerator tests | 26 26 5.5s Precompiling packages... 5039.2 ms ✓ SciMLOperators 1433.0 ms ✓ NVTX_jll 1403.6 ms ✓ JuliaNVTXCallbacks_jll 6155.8 ms ✓ RecursiveArrayTools 2857.1 ms ✓ KernelAbstractions → EnzymeExt 1175.7 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1695.0 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 2652.0 ms ✓ NVTX 3473.9 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 3644.8 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 32667.3 ms ✓ SciMLBase 16141.7 ms ✓ DiffEqBase 5376.0 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt Info Given ClimaTimeSteppers was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl WARNING: Detected access to binding `ClimaTimeSteppers.__nvtx_domain__` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. 93239.8 ms ✓ ClimaTimeSteppers 14 dependencies successfully precompiled in 178 seconds. 130 already precompiled. 4 dependencies had output during precompilation: ┌ ClimaTimeSteppers │ [Output was shown above] └ ┌ DiffEqBase │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl └ ┌ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl └ ┌ DiffEqBase → DiffEqBaseSparseArraysExt │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl └ WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl Test Summary: | Pass Total Time TimeManager tests | 132 132 3m42.2s Test Summary: | Pass Total Time DataStructures tests | 90 90 3.2s Precompiling packages... 4111.9 ms ✓ CommonDataModel 5050.8 ms ✓ OpenMPI_jll 5654.7 ms ✓ HDF5_jll 5660.5 ms ✓ NetCDF_jll 10326.8 ms ✓ NCDatasets 5 dependencies successfully precompiled in 31 seconds. 55 already precompiled. Precompiling packages... 1289.4 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1 dependency successfully precompiled in 1 seconds. 18 already precompiled. Precompiling packages... 5929.2 ms ✓ ClimaUtilities → ClimaUtilitiesNCDatasetsExt 1 dependency successfully precompiled in 6 seconds. 66 already precompiled. Test Summary: | Pass Total Time FileReaders tests | 22 22 1m44.1s Precompiling packages... 1911.7 ms ✓ Accessors → IntervalSetsExt 1110.0 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 1411.1 ms ✓ UnrolledUtilities → UnrolledUtilitiesStaticArraysExt 3188.4 ms ✓ TaylorSeries → TaylorSeriesSAExt 2562.5 ms ✓ ArrayInterface → ArrayInterfaceBandedMatricesExt 2909.7 ms ✓ BlockArrays → BlockArraysBandedMatricesExt 1825.0 ms ✓ GaussQuadrature 3714.9 ms ✓ TaylorSeries → TaylorSeriesRATExt 16181.3 ms ✓ ForwardDiff 14851.7 ms ✓ HDF5 4217.2 ms ✓ RootSolvers 4249.4 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 3648.3 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt Info Given ClimaCore was explicitly requested, output will be shown live  WARNING: Detected access to binding `MatrixFields.__nvtx_domain__` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. 36769.8 ms ✓ ClimaCore 14 dependencies successfully precompiled in 99 seconds. 130 already precompiled. 1 dependency had output during precompilation: ┌ ClimaCore │ [Output was shown above] └ Precompiling packages... 7086.5 ms ✓ FastPower → FastPowerForwardDiffExt 1 dependency successfully precompiled in 7 seconds. 20 already precompiled. Precompiling packages... Info Given DiffEqBaseForwardDiffExt was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl 8355.8 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 1 dependency successfully precompiled in 9 seconds. 109 already precompiled. 1 dependency had output during precompilation: ┌ DiffEqBase → DiffEqBaseForwardDiffExt │ [Output was shown above] └ Precompiling packages... 18565.3 ms ✓ ClimaUtilities → ClimaUtilitiesClimaCoreExt 1 dependency successfully precompiled in 19 seconds. 145 already precompiled. Precompiling packages... 16418.9 ms ✓ ClimaCore → KrylovExt 1 dependency successfully precompiled in 17 seconds. 145 already precompiled. Precompiling packages... 18881.9 ms ✓ ClimaUtilities → ClimaUtilitiesClimaCoreNCDatasetsExt 1 dependency successfully precompiled in 20 seconds. 164 already precompiled. Precompiling packages... 5507.3 ms ✓ TempestRemap_jll 19867.8 ms ✓ ClimaCoreTempestRemap 2 dependencies successfully precompiled in 26 seconds. 162 already precompiled. Precompiling packages... 19759.7 ms ✓ ClimaUtilities → ClimaUtilitiesClimaCoreTempestRemapExt 1 dependency successfully precompiled in 20 seconds. 167 already precompiled. Precompiling packages... 4626.2 ms ✓ Interpolations 1 dependency successfully precompiled in 5 seconds. 29 already precompiled. Precompiling packages... 4504.2 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 1 dependency successfully precompiled in 5 seconds. 66 already precompiled. Precompiling packages... Info Given DiffEqBaseChainRulesCoreExt was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl 5328.3 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 1 dependency successfully precompiled in 6 seconds. 99 already precompiled. 1 dependency had output during precompilation: ┌ DiffEqBase → DiffEqBaseChainRulesCoreExt │ [Output was shown above] └ Precompiling packages... 3212.6 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1 dependency successfully precompiled in 3 seconds. 11 already precompiled. Precompiling packages... 4176.9 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 1 dependency successfully precompiled in 4 seconds. 17 already precompiled. Precompiling packages... 19346.8 ms ✓ ClimaUtilities → ClimaUtilitiesClimaCoreInterpolationsExt 1 dependency successfully precompiled in 20 seconds. 162 already precompiled. [ Info: Saving TempestRegrid files to /tmp/jl_UGH1PA [ Info: Saving TempestRegrid files to /tmp/jl_ATQOB1 ┌ Warning: Converting lai_lv data in /tmp/jl_ATQOB1/datafile.g from Float32 to Float64 └ @ ClimaUtilitiesClimaCoreTempestRemapExt.TempestRegridderExt ~/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:453 Test Summary: | Pass Total Time Regridders tests | 25 25 9m38.5s [ Info: Saving TempestRegrid files to /tmp/jl_88ODRi [ Info: Saving TempestRegrid files to /tmp/jl_1yg5Gi [ Info: Saving TempestRegrid files to /tmp/jl_NLlieJ ┌ Warning: Converting sp data in /tmp/jl_NLlieJ/datafile.g from Float32 to Float64 └ @ ClimaUtilitiesClimaCoreTempestRemapExt.TempestRegridderExt ~/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:453 [ Info: Saving TempestRegrid files to /tmp/jl_kMPbF5 ┌ Warning: Converting sp data in /tmp/jl_kMPbF5/datafile.g from Float32 to Float64 └ @ ClimaUtilitiesClimaCoreTempestRemapExt.TempestRegridderExt ~/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:453 [ Info: Saving TempestRegrid files to /tmp/jl_1ZBVU0 [ Info: Saving TempestRegrid files to /tmp/jl_hw2wEu ┌ Warning: Converting sp data in /tmp/jl_hw2wEu/datafile.g from Float32 to Float64 └ @ ClimaUtilitiesClimaCoreTempestRemapExt.TempestRegridderExt ~/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:453 Test Summary: | Pass Total Time DataHandling tests | 251 251 4m31.3s Test Summary: | Pass Total Time SpaceVaryingInputs tests | 7 7 5.9s Test Summary: | Pass Total Time TimeVaryingInputs tests | 86 86 11.2s ┌ Warning: `t_start` was removed will be ignored │ caller = top-level scope at time_varying_inputs23.jl:26 └ @ Core ~/.julia/packages/ClimaUtilities/OHLAs/test/time_varying_inputs23.jl:26 [ Info: Saving TempestRegrid files to /tmp/jl_3CI6Uv [ Info: Saving TempestRegrid files to /tmp/jl_jXahrH [ Info: Saving TempestRegrid files to /tmp/jl_nyTNXW [ Info: Saving TempestRegrid files to /tmp/jl_xLzBIQ [ Info: Saving TempestRegrid files to /tmp/jl_0bjDHQ [ Info: Saving TempestRegrid files to /tmp/jl_jAqfmn [ Info: Saving TempestRegrid files to /tmp/jl_B7Rtzn [ Info: Saving TempestRegrid files to /tmp/jl_8bZ8TF [ Info: Saving TempestRegrid files to /tmp/jl_ujpPjg [ Info: Saving TempestRegrid files to /tmp/jl_xf4ipz ┌ Warning: Converting u10n data in /tmp/jl_xf4ipz/datafile.g from Float32 to Float64 └ @ ClimaUtilitiesClimaCoreTempestRemapExt.TempestRegridderExt ~/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:453 [ Info: Saving TempestRegrid files to /tmp/jl_clocAf ┌ Warning: Converting u10n data in /tmp/jl_clocAf/datafile.g from Float32 to Float64 └ @ ClimaUtilitiesClimaCoreTempestRemapExt.TempestRegridderExt ~/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:453 [ Info: Saving TempestRegrid files to /tmp/jl_fNU4zI ┌ Warning: Converting u10n data in /tmp/jl_fNU4zI/datafile.g from Float32 to Float64 └ @ ClimaUtilitiesClimaCoreTempestRemapExt.TempestRegridderExt ~/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:453 [ Info: Saving TempestRegrid files to /tmp/jl_ATBtkS ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 737 running 1 of 2 signal (10): User defined signal 1 unknown function (ip: 0x742d9771ff14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:523 wait at ./task.jl:1213 wait_forever at ./task.jl:1150 jfptr_wait_forever_61402.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2339 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ijl_isa at /source/src/subtype.c:2480 jl_tuple1_isa at /source/src/subtype.c:2419 jl_typemap_entry_assoc_exact at /source/src/typemap.c:1152 jl_typemap_assoc_exact at /source/src/julia_internal.h:1813 [inlined] jl_typemap_level_assoc_exact at /source/src/typemap.c:1240 jl_typemap_assoc_exact at /source/src/julia_internal.h:1817 [inlined] jl_typemap_level_assoc_exact at /source/src/typemap.c:1196 jl_typemap_assoc_exact at /source/src/julia_internal.h:1817 [inlined] jl_lookup_generic_ at /source/src/gf.c:3744 [inlined] ijl_apply_generic at /source/src/gf.c:3807 #16 at /home/pkgeval/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:421 iterate at ./generator.jl:48 [inlined] collect_to! at ./array.jl:854 collect_to_with_first! at ./array.jl:832 unknown function (ip: 0x742d785ead24) at (unknown file) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 _collect at ./array.jl:826 collect_similar at ./array.jl:738 unknown function (ip: 0x742d785e9fa6) at (unknown file) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 map at ./abstractarray.jl:3366 unknown function (ip: 0x742d785e9e76) at (unknown file) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 #hdwrite_regridfile_rll_to_cgll#2 at /home/pkgeval/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:420 hdwrite_regridfile_rll_to_cgll at /home/pkgeval/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:345 [inlined] #TempestRegridder#1 at /home/pkgeval/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:83 TempestRegridder at /home/pkgeval/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:67 unknown function (ip: 0x742d781a1f88) at (unknown file) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2339 [inlined] jl_f__apply_iterate at /source/src/builtins.c:864 #DataHandler#1 at /home/pkgeval/.julia/packages/ClimaUtilities/OHLAs/ext/DataHandlingExt.jl:344 DataHandler at /home/pkgeval/.julia/packages/ClimaUtilities/OHLAs/ext/DataHandlingExt.jl:201 [inlined] #TimeVaryingInput#7 at /home/pkgeval/.julia/packages/ClimaUtilities/OHLAs/ext/TimeVaryingInputsExt.jl:181 TimeVaryingInput at /home/pkgeval/.julia/packages/ClimaUtilities/OHLAs/ext/TimeVaryingInputsExt.jl:153 unknown function (ip: 0x742d73d3441d) at (unknown file) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2339 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:776 jl_toplevel_eval_flex at /source/src/toplevel.c:716 ijl_toplevel_eval at /source/src/toplevel.c:788 ijl_toplevel_eval_in at /source/src/toplevel.c:833 eval at ./boot.jl:489 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 _include at ./loading.jl:2906 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_70396.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2339 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:776 jl_eval_module_expr at /source/src/toplevel.c:197 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:661 ijl_toplevel_eval at /source/src/toplevel.c:788 ijl_toplevel_eval_in at /source/src/toplevel.c:833 eval at ./boot.jl:489 jfptr_eval_18116.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2339 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:776 jl_toplevel_eval_flex at /source/src/toplevel.c:716 ijl_toplevel_eval at /source/src/toplevel.c:788 ijl_toplevel_eval_in at /source/src/toplevel.c:833 eval at ./boot.jl:489 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 _include at ./loading.jl:2906 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_70396.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2339 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:776 jl_toplevel_eval_flex at /source/src/toplevel.c:716 ijl_toplevel_eval at /source/src/toplevel.c:788 ijl_toplevel_eval_in at /source/src/toplevel.c:833 eval at ./boot.jl:489 exec_options at ./client.jl:290 _start at ./client.jl:557 jfptr__start_61484.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2339 [inlined] true_main at /source/src/jlapi.c:964 jl_repl_entrypoint at /source/src/jlapi.c:1132 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x742d976c1249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: Converting u10n data in /tmp/jl_ATBtkS/datafile.g from Float32 to Float64 └ @ ClimaUtilitiesClimaCoreTempestRemapExt.TempestRegridderExt ~/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:453 [ Info: Saving TempestRegrid files to /tmp/jl_ZsngIi ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x7948f326bf14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:523 wait at ./task.jl:1213 wait_forever at ./task.jl:1150 jfptr_wait_forever_61402.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2339 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1213 wait_forever at ./task.jl:1150 jfptr_wait_forever_61402.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2339 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x00007948dab0fee0 Total snapshots: 1. Utilization: 0% ╎1 @Base/task.jl:1150 wait_forever() ╎ 1 @Base/task.jl:1213 wait() Thread 2 (default) Task 0x00007948dcffc100 Total snapshots: 1. Utilization: 0% ╎1 @Base/task.jl:1150 wait_forever() ╎ 1 @Base/task.jl:1213 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 unknown function (ip: 0x7948f326bf14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:523 [737] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/ClimaUtilities/OHLAs/test/time_varying_inputs23.jl:25 wait at ./task.jl:1213 _ZNK12_GLOBAL__N_114ConstraintInfo13getConstraintEN4llvm7CmpInst9PredicateEPNS1_5ValueES5_RNS1_15SmallVectorImplIS5_EEb.constprop.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) wait_forever at ./task.jl:1150 jfptr_wait_forever_61402.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 _ZN12_GLOBAL__N_114ConstraintInfo11addFactImplEN4llvm7CmpInst9PredicateEPNS1_5ValueES5_jjRNS1_15SmallVectorImplINS_10StackEntryEEEb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) jl_apply at /source/src/julia.h:2339 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1213 _ZN12_GLOBAL__N_114ConstraintInfo7addFactEN4llvm7CmpInst9PredicateEPNS1_5ValueES5_jjRNS1_15SmallVectorImplINS_10StackEntryEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) wait_forever at ./task.jl:1150 _ZZL20eliminateConstraintsRN4llvm8FunctionERNS_13DominatorTreeERNS_8LoopInfoERNS_15ScalarEvolutionERNS_25OptimizationRemarkEmitterEENKUlNS_12CmpPredicateEPNS_5ValueESC_E0_clESA_SC_SC_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) jfptr_wait_forever_61402.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2339 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 23423096 (Pool: 23422506; Big: 590); GC: 27 _ZL20eliminateConstraintsRN4llvm8FunctionERNS_13DominatorTreeERNS_8LoopInfoERNS_15ScalarEvolutionERNS_25OptimizationRemarkEmitterE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm25ConstraintEliminationPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:791 operator() at /source/src/jitlayers.cpp:1475 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1436 [inlined] operator() at /source/src/jitlayers.cpp:1588 [inlined] addModule at /source/src/jitlayers.cpp:2045 jl_compile_codeinst_now at /source/src/jitlayers.cpp:649 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:840 jl_compile_method_internal at /source/src/gf.c:3131 _jl_invoke at /source/src/gf.c:3603 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2339 [inlined] jl_f_invokelatest at /source/src/builtins.c:877 profile_printing_listener at ./Base.jl:337 #start_profile_listener##0 at ./Base.jl:355 jfptr_YY.start_profile_listenerYY.YY.0_17277.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2339 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1213 wait_forever at ./task.jl:1150 jfptr_wait_forever_61402.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2339 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 603163691 (Pool: 603150983; Big: 12708); GC: 211 PkgEval terminated after 2724.45s: test duration exceeded the time limit